Non-Coding RNA Search

Ss1.1-Pig4-TMW8055H14.5

Sequence:


               
               TGCATGTGCACAATAAACTTGTGGATCCACTATACAGTATGAAAGAAGGAAATTGAAGGA
GACTGGATCAAAATTCTGCTTGAATGAACAGTATACTTTCATATTATAGATGAATTTTCA
GCTATGCAATATGATAAAAACTTGGGGAATTTTTGAATATTGTCATTTTTTTTGAAGTCT
AATATCTATATGTTAAACATTCCATATTTAGAATATCCATTTTATACTAGGGTTGAGAAG
TACCTGGCTCTCACAACTGATCAGCTGTTTGTTACAGAAGCCACATAAAACAGCACAGAA
ATGAAATGTCTGCCTGTTTACAAATTTCAAGTAATTTTAAAGGTGAAGATTCTCTACAAG
TACCATTCCTATGACTCAAATTGGCATTATTAGATTCAATTTTTTTAAATACAGAAGACA
CTCCAAGCCTTTCAGGTATCAAGCAACTGTCATTGCAAGGCTTCTGGAATGCTATCTTTA
TATTTTCTCTTCATCACACACAAGCTTTCTGCACGTGGTTGCCTTAGTCATCTTCCTGCA
GTAGCATCTGGACATCAAAAGTCCTGCTATAAATCGTTGATATAGAAAATATGAAGATAT
GGCTGTGCCTAACAATACAGTTTACACCCTTTTGAAAAGTATGTGTAAGTGCATGTTTTT
GTGCACCTTCTTCTATAGCACTTTTTTACAAATGTGCTCTTATTTTTATTTAATGATTTG
GGTTCATGCACCTCATATAAGTATTTTGGCAATTATGAGCTTTATACCTAGTAACACACT
TAAGGAAGATTTTTTGAAGTAAATTTTCTGATTATTGTTAAACTTCATAAATGATTAGCT
TTATTCCTTACATATAATGTTTAAAAGGATAATATGATGAAGTATAATATAAAAGGAATT
ACTGTAAACTAGATTGCCATAACAACTTGCATCATTAAATTGCAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCATGTGCACAATAAACTTGTGGATCCACTATACAGTATGAAAGAAGGAAATTGAAGGA
GACTGGATCAAAATTCTGCTTGAATGAACAGTATACTTTCATATTATAGATGAATTTTCA
GCTATGCAATATGATAAAAACTTGGGGAATTTTTGAATATTGTCATTTTTTTTGAAGTCT
AATATCTATATGTTAAACATTCCATATTTAGAATATCCATTTTATACTAGGGTTGAGAAG
TACCTGGCTCTCACAACTGATCAGCTGTTTGTTACAGAAGCCACATAAAACAGCACAGAA
ATGAAATGTCTGCCTGTTTACAAATTTCAAGTAATTTTAAAGGTGAAGATTCTCTACAAG
TACCATTCCTATGACTCAAATTGGCATTATTAGATTCAATTTTTTTAAATACAGAAGACA
CTCCAAGCCTTTCAGGTATCAAGCAACTGTCATTGCAAGGCTTCTGGAATGCTATCTTTA
TATTTTCTCTTCATCACACACAAGCTTTCTGCACGTGGTTGCCTTAGTCATCTTCCTGCA
GTAGCATCTGGACATCAAAAGTCCTGCTATAAATCGTTGATATAGAAAATATGAAGATAT
GGCTGTGCCTAACAATACAGTTTACACCCTTTTGAAAAGTATGTGTAAGTGCATGTTTTT
GTGCACCTTCTTCTATAGCACTTTTTTACAAATGTGCTCTTATTTTTATTTAATGATTTG
GGTTCATGCACCTCATATAAGTATTTTGGCAATTATGAGCTTTATACCTAGTAACACACT
TAAGGAAGATTTTTTGAAGTAAATTTTCTGATTATTGTTAAACTTCATAAATGATTAGCT
TTATTCCTTACATATAATGTTTAAAAGGATAATATGATGAAGTATAATATAAAAGGAATT
ACTGTAAACTAGATTGCCATAACAACTTGCATCATTAAATTGCAAATA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               700-948, gnl|bosTau2|chr2 (37832838-37832598)
               

               
               700-948, gnl|Hg17|chr4 (44545377-44545150)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               700-948, gnl|bosTau2|chr2 (37832838-37832598)
               

               
               700-948, gnl|Hg17|chr4 (44545377-44545150)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               tra (0.369276)
               

               
               ret (0.257467)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               ret (0.257467)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)

	700-948, gnl\|bosTau2\|chr2 (37832838-37832598)
	700-948, gnl\|Hg17\|chr4 (44545377-44545150)

	tra (0.369276)
	ret (0.257467)
	eje (0.197668)
	aor (0.195274)
	mga (0.160205)
	lun (0.150489)
	liv (0.146284)
	lyg (0.133103)
	ova (0.129132)