Non-Coding RNA Search

Ss1.1-Pig4-TMW8055H15.3

Sequence:


               
               ACTTCCGGTCCCGCCGCCCGGAGCCGGTGCTGCTGTGAGGGGCTGCGCTTCGCCGCCGCC
GGCCGGCCGGGCATGGTGTTGGGCGCCGGTCCCGCCTCGCCTGTCTCCGGGTGCCCAGGG
TAAAGGCAGCAGGAATGCTGACGCTGGCGAGCAAACTGAAGCGGGACGACGGTCTCAAGG
GGTCCCGGGCGTCCCCCGCAGCCTCCGACTCCACTCGGCGGGTTTCTGTGCGAGACAGGC
TGCTTGTTAAAGAGGTTGCGGAACTTGAAGCTAATTTGCCTTGTACGTGTAAAGTGCATT
TTCCTGATCCAAACAAGCTTCATTGCTTTCAGCTGACTGTAACCCCAGATGAGGGTTACT
ACCAGGGTGGAAAGTTTCAGTTTGAAACTGAAGTTCCCGATGCGTACAACATGGTGCCCC
CCAAAGTGAAATGCCTGACCAGGATCTGGCACCCCAACATCACAGAGACAGGTGAAATAT
GTCTCAGTCTGCTGCGAGAACATTCGATCGACGGCACCGGCTGGGCTCCCACGCGGACGC
TGAAGGATGTTGTTTGGGGATTAAACTCATTGTTCACTGATCTTCTGAATTTTGATGACC
CACTGAACATCGAGGCTGCAGAGCATCACTTGCGGGACAAGGAGGACTTCCGCAGCAAGG
TGGAGGACTACATCAAGCGCTTCGCCAGATGATAGGCGGGGCCCCCGGCGGGCGGGACAC
GTCGGAAGGGCGCCTCCCGCCCACGCGCACGGCGAGCCTCCTCCCCTCCGCGCTCCCCGC
CCTCCCCCCGGCTCGCCGAGGCCTGGACCACGTGTCCTGAGGCAGCACCTCTCCACGAGC
GCCCGTGGTAGATGGGAGCTCCCGTGCATACAGCAAGGAAACGTGTTTGGGGTTCTAAAG
AGGTGTCTGCTTACCTTACCATGTTTGCTTTTTTGAAACTGTACTGTATAGGCTGTGGAT
GAGATTCTCCAAGTTGTGATGAACTCAGAATTGAGGCTAGAGCTCGCTTCTCCCCCTGTC
CCCAAAGTCGTTCCCTGCACAGGTGACGCTCATGACGTGCTCAGCGTAACTCGCCGGCCG
GCGACCAGAAGCCCGCTACAAACTGTGATTGGATGCAGATTCTCCTGGCGCCTTCCACGC
GTGGGGGCCCCGCCTGGATGGCGGGAGGCTCCCCCGAAGGCATAGTCATTCACTGTAGAT
CTCTTACCCAAAGGCGTATTTTATTTAATGTAAGTATATTTTGGAACAGATTTGTAATTT
GTACAATTTAATGCTTTAATTATTTTTTTCTATTCTCATTTAGTTTGTATTTTCATTGTA
TAGAGCAGACAGAAAGATGTTGAGTCAAGCAACTATTGAAGAGAAATACAAAGAAACCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTCCGGTCCCGCCGCCCGGAGCCGGTGCTGCTGTGAGGGGCTGCGCTTCGCCGCCGCC
GGCCGGCCGGGCATGGTGTTGGGCGCCGGTCCCGCCTCGCCTGTCTCCGGGTGCCCAGGG
TAAAGGCAGCAGGAATGCTGACGCTGGCGAGCAAACTGAAGCGGGACGACGGTCTCAAGG
GGTCCCGGGCGTCCCCCGCAGCCTCCGACTCCACTCGGCGGGTTTCTGTGCGAGACAGGC
TGCTTGTTAAAGAGGTTGCGGAACTTGAAGCTAATTTGCCTTGTACGTGTAAAGTGCATT
TTCCTGATCCAAACAAGCTTCATTGCTTTCAGCTGACTGTAACCCCAGATGAGGGTTACT
ACCAGGGTGGAAAGTTTCAGTTTGAAACTGAAGTTCCCGATGCGTACAACATGGTGCCCC
CCAAAGTGAAATGCCTGACCAGGATCTGGCACCCCAACATCACAGAGACAGGTGAAATAT
GTCTCAGTCTGCTGCGAGAACATTCGATCGACGGCACCGGCTGGGCTCCCACGCGGACGC
TGAAGGATGTTGTTTGGGGATTAAACTCATTGTTCACTGATCTTCTGAATTTTGATGACC
CACTGAACATCGAGGCTGCAGAGCATCACTTGCGGGACAAGGAGGACTTCCGCAGCAAGG
TGGAGGACTACATCAAGCGCTTCGCCAGATGATAGGCGGGGCCCCCGGCGGGCGGGACAC
GTCGGAAGGGCGCCTCCCGCCCACGCGCACGGCGAGCCTCCTCCCCTCCGCGCTCCCCGC
CCTCCCCCCGGCTCGCCGAGGCCTGGACCACGTGTCCTGAGGCAGCACCTCTCCACGAGC
GCCCGTGGTAGATGGGAGCTCCCGTGCATACAGCAAGGAAACGTGTTTGGGGTTCTAAAG
AGGTGTCTGCTTACCTTACCATGTTTGCTTTTTTGAAACTGTACTGTATAGGCTGTGGAT
GAGATTCTCCAAGTTGTGATGAACTCAGAATTGAGGCTAGAGCTCGCTTCTCCCCCTGTC
CCCAAAGTCGTTCCCTGCACAGGTGACGCTCATGACGTGCTCAGCGTAACTCGCCGGCCG
GCGACCAGAAGCCCGCTACAAACTGTGATTGGATGCAGATTCTCCTGGCGCCTTCCACGC
GTGGGGGCCCCGCCTGGATGGCGGGAGGCTCCCCCGAAGGCATAGTCATTCACTGTAGAT
CTCTTACCCAAAGGCGTATTTTATTTAATGTAAGTATATTTTGGAACAGATTTGTAATTT
GTACAATTTAATGCTTTAATTATTTTTTTCTATTCTCATTTAGTTTGTATTTTCATTGTA
TAGAGCAGACAGAAAGATGTTGAGTCAAGCAACTATTGAAGAGAAATACAAAGAAACCAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q969M7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q969M7_HUMAN

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-119, gnl|bosTau2|chr3 (84396818-84396938)
               

               
               1-119, gnl|Hg17|chr2 (238657656-238657775)
               

               
               1-119, gnl|Mm7|chr1 (91157764-91157883)
               


               
               150-696, gnl|bosTau2|chr22 (37870609-37871159)
               

               
               150-696, gnl|Hg17|chr3 (37160527-37159987)
               

               
               150-696, gnl|Mm7|chr12 (33930112-33930658)
               


               
               1080-1357, gnl|bosTau2|chr22 (37871558-37871818)
               

               
               1080-1357, gnl|Hg17|chr3 (37159196-37158943)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-119, gnl|bosTau2|chr3 (84396818-84396938)
               

               
               1-119, gnl|Hg17|chr2 (238657656-238657775)
               

               
               1-119, gnl|Mm7|chr1 (91157764-91157883)
               


               
               150-696, gnl|bosTau2|chr22 (37870609-37871159)
               

               
               150-696, gnl|Hg17|chr3 (37160527-37159987)
               

               
               150-696, gnl|Mm7|chr12 (33930112-33930658)
               


               
               1080-1357, gnl|bosTau2|chr22 (37871558-37871818)
               

               
               1080-1357, gnl|Hg17|chr3 (37159196-37158943)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               cst (0.560146)
               

               
               cki (0.330469)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.560146)
               

               
               cki (0.330469)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	1-119, gnl\|bosTau2\|chr3 (84396818-84396938)
	1-119, gnl\|Hg17\|chr2 (238657656-238657775)
	1-119, gnl\|Mm7\|chr1 (91157764-91157883)

	150-696, gnl\|bosTau2\|chr22 (37870609-37871159)
	150-696, gnl\|Hg17\|chr3 (37160527-37159987)
	150-696, gnl\|Mm7\|chr12 (33930112-33930658)

	1080-1357, gnl\|bosTau2\|chr22 (37871558-37871818)
	1080-1357, gnl\|Hg17\|chr3 (37159196-37158943)

	cst (0.560146)
	cki (0.330469)
	ecc (0.23007)
	fli (0.202881)
	nlu (0.191681)
	nep (0.183925)
	mgm (0.180343)
	cje (0.165235)
	cag (0.151194)
	lnt (0.142308)
	che (0.136314)
	pla (0.133672)
	ute (0.132784)
	cov (0.132153)
	cly (0.120642)
	med (0.116252)
	cty (0.10408)
	nbm (0.0993246)