Non-Coding RNA Search

Ss1.1-Pig4-TMW8055H18.5

Sequence:


               
               GAAGATTCCATCCCTTGCACCCGCGACCTCAGTTGGAGGGATTCGTTCACCTATGGAGAG
TGGGAAAGAGAGAATCCCTCTGGGCCGCAGCCCCTCTCTCTCCTCAGCACTCTGGCAGCC
TCCACGGGGCCATAGCTGTCCCCGATCATAGGAAGTTCTATCTGAGCCTTGCACACTGGG
GAGAATCTACACAGCCCTCGCCAACGCCACTCTGCAGCATTCAGCTTTCTGAGGGACTCT
ATCTGGTGGAGAGGAGAAAGCCACAACTAAGGAAGAACTAGAATGATCTCCTGATGACAG
CACAGCCTCTCCTGAGAGAACCACTTGAGAGCATGACTCCTGGATGAGAAGCATTGTTCC
AGCACGTGACTTGGCGTCCTGTCTACTGCACCTCGCCTCCATTCCACCCCCAGAGTGGGC
ACGAGAAGACGTGCTTGCAGAAGGGCCGGGACCGAGAGACGGAGAGAAGGAGGAGAGAGA
AACAGGACCGGAGGAGAGGTGGAAGAGACCCAGACGGCGGCCCCAAAGTGGAAGGTGGAG
GGAGGAAATCAGAGAAGAGGGGAGAGGCAGGAAAGTGGTGACAGAAGGAAACATAAGAGA
AGACAAGCGAAGCACGCCGCTGAGAGATGCCTCGCCACACTTTTATTTCTCTAATTCAAA
CTTGAAAGTAAGGTCATATTCCAAAAAAGATAAGTGCTTTCTTCTCTGCTCAAACTATTC
TGGACAAGGATGAGGGGCCAGAAATGAATTCCAGCCAAAGGCCTCTCCTTAAATGTGCCT
TTTTTGCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGATTCCATCCCTTGCACCCGCGACCTCAGTTGGAGGGATTCGTTCACCTATGGAGAG
TGGGAAAGAGAGAATCCCTCTGGGCCGCAGCCCCTCTCTCTCCTCAGCACTCTGGCAGCC
TCCACGGGGCCATAGCTGTCCCCGATCATAGGAAGTTCTATCTGAGCCTTGCACACTGGG
GAGAATCTACACAGCCCTCGCCAACGCCACTCTGCAGCATTCAGCTTTCTGAGGGACTCT
ATCTGGTGGAGAGGAGAAAGCCACAACTAAGGAAGAACTAGAATGATCTCCTGATGACAG
CACAGCCTCTCCTGAGAGAACCACTTGAGAGCATGACTCCTGGATGAGAAGCATTGTTCC
AGCACGTGACTTGGCGTCCTGTCTACTGCACCTCGCCTCCATTCCACCCCCAGAGTGGGC
ACGAGAAGACGTGCTTGCAGAAGGGCCGGGACCGAGAGACGGAGAGAAGGAGGAGAGAGA
AACAGGACCGGAGGAGAGGTGGAAGAGACCCAGACGGCGGCCCCAAAGTGGAAGGTGGAG
GGAGGAAATCAGAGAAGAGGGGAGAGGCAGGAAAGTGGTGACAGAAGGAAACATAAGAGA
AGACAAGCGAAGCACGCCGCTGAGAGATGCCTCGCCACACTTTTATTTCTCTAATTCAAA
CTTGAAAGTAAGGTCATATTCCAAAAAAGATAAGTGCTTTCTTCTCTGCTCAAACTATTC
TGGACAAGGATGAGGGGCCAGAAATGAATTCCAGCCAAAGGCCTCTCCTTAAATGTGCCT
TTTTTGCCAAAA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-152, gnl|bosTau2|chr4 (50594807-50594656)
               

               
               1-152, gnl|canFam2|chr14 (10864718-10864233)
               

               
               1-152, gnl|dasNov1|scaffold_26052 (44163-43673)
               

               
               1-152, gnl|hg17|chr7 (127963743-127964196)
               

               
               1-152, gnl|Hg17|chr7 (127963924-127964075)
               

               
               1-152, gnl|mm7|chr6 (29265959-29266432)
               

               
               1-152, gnl|Mm7|chr6 (29266161-29266312)
               

               
               1-152, gnl|oryCun1|scaffold_174955 (87838-87457)
               

               
               1-152, gnl|panTro1|chr6 (130353721-130354173)
               

               
               1-152, gnl|rheMac2|chr3 (166053460-166053912)
               

               
               1-152, gnl|rn3|chr4 (56471480-56471946)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-152, gnl|bosTau2|chr4 (50594807-50594656)
               

               
               1-152, gnl|canFam2|chr14 (10864718-10864233)
               

               
               1-152, gnl|dasNov1|scaffold_26052 (44163-43673)
               

               
               1-152, gnl|hg17|chr7 (127963743-127964196)
               

               
               1-152, gnl|Hg17|chr7 (127963924-127964075)
               

               
               1-152, gnl|mm7|chr6 (29265959-29266432)
               

               
               1-152, gnl|Mm7|chr6 (29266161-29266312)
               

               
               1-152, gnl|oryCun1|scaffold_174955 (87838-87457)
               

               
               1-152, gnl|panTro1|chr6 (130353721-130354173)
               

               
               1-152, gnl|rheMac2|chr3 (166053460-166053912)
               

               
               1-152, gnl|rn3|chr4 (56471480-56471946)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               tes (0.415628)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)

	1-152, gnl\|bosTau2\|chr4 (50594807-50594656)
	1-152, gnl\|canFam2\|chr14 (10864718-10864233)
	1-152, gnl\|dasNov1\|scaffold_26052 (44163-43673)
	1-152, gnl\|hg17\|chr7 (127963743-127964196)
	1-152, gnl\|Hg17\|chr7 (127963924-127964075)
	1-152, gnl\|mm7\|chr6 (29265959-29266432)
	1-152, gnl\|Mm7\|chr6 (29266161-29266312)
	1-152, gnl\|oryCun1\|scaffold_174955 (87838-87457)
	1-152, gnl\|panTro1\|chr6 (130353721-130354173)
	1-152, gnl\|rheMac2\|chr3 (166053460-166053912)
	1-152, gnl\|rn3\|chr4 (56471480-56471946)