Non-Coding RNA Search

Ss1.1-Pig4-TMW8055H20.3

Sequence:


               
               ACCCTCATGTTCTTTAACACCAAATACTTCCTCTTGAAGACAGTGGACCAGCACATGAAG
CTGGCCTTCTCCAAGGTCTTACGACAGACAAAGAAGAACCCCTCTAATCCTAAGGATAAA
AGCACGAGTATTCGGTACCTGAAGGCACTTGGGATACACCAGACTGGCCAGAAAGTTACA
GATGACATGTATGCAGAACAAACGGAAAATCCAGAGAATCCCCTGAGATGTCCTATCAAG
CTCTACGATTTCTACCTCTTTAAATGCCCTCAGAGTGTGAAAGGCCGGAATGACACCTTT
TACCTGACGCCAGAGCCGGTGGTGGCTCCCAACAGCCCAATCTGGTACTCGGTCCAGCCT
ATCAGCAGAGAGCAGATGGGACAGATGCTGACTCGAATCCTGGTGATACGAGAAATTCAG
GAGGCCATAGCAGTGGCTAATGCAAGCACCATGCACTGAGATCCCTCAGCCGTGGTTCAA
GGGAGACGATCCAGGAAAAAACGGACAGACTTTCACACTAAAGAAGAGGCCTCCATTTTT
TTCTTTTCTTTTTTATTGGTGTAGTTATGAAGCCTTTCAGACTGCTTCTGTTTAAAATGT
AAAAGGAAACTTTGCCCCCGTGCATCTTCATAAACCTGCTGTGGCAGACTCCTCAGCCCA
TGGGGGCTCTGGGTTTCCTGAGAGCCAGATGTTCTAGAAAGTTGCTGGCTGACTTTTTTT
GTTTGGGGCCTGAGGAAAGGGCTTGGACTGTTAAGAGAAATGTGGCCCCTTATCCTTCCT
CCAGAAAGATGGAATTAATGATGGATGGACCCTACAGAGAGATCTCTCCAGCTGGCTTCC
ATTATGACTGGCAGACATTGCTGACCACAGGGGAGCGAGCCATGGCCTTTTCTTTCTTCA
TGCTCAGACATAAACCTAGCATCTTAATGGAAGGAAAATGAGGGGAACTTCAATTATGAT
TTATTAAAGACAATTTCTATTACACCCTTCTTTATGACAAATGACATTTTAGATGTTAAA
GTAAAAACTTTACCTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCTCATGTTCTTTAACACCAAATACTTCCTCTTGAAGACAGTGGACCAGCACATGAAG
CTGGCCTTCTCCAAGGTCTTACGACAGACAAAGAAGAACCCCTCTAATCCTAAGGATAAA
AGCACGAGTATTCGGTACCTGAAGGCACTTGGGATACACCAGACTGGCCAGAAAGTTACA
GATGACATGTATGCAGAACAAACGGAAAATCCAGAGAATCCCCTGAGATGTCCTATCAAG
CTCTACGATTTCTACCTCTTTAAATGCCCTCAGAGTGTGAAAGGCCGGAATGACACCTTT
TACCTGACGCCAGAGCCGGTGGTGGCTCCCAACAGCCCAATCTGGTACTCGGTCCAGCCT
ATCAGCAGAGAGCAGATGGGACAGATGCTGACTCGAATCCTGGTGATACGAGAAATTCAG
GAGGCCATAGCAGTGGCTAATGCAAGCACCATGCACTGAGATCCCTCAGCCGTGGTTCAA
GGGAGACGATCCAGGAAAAAACGGACAGACTTTCACACTAAAGAAGAGGCCTCCATTTTT
TTCTTTTCTTTTTTATTGGTGTAGTTATGAAGCCTTTCAGACTGCTTCTGTTTAAAATGT
AAAAGGAAACTTTGCCCCCGTGCATCTTCATAAACCTGCTGTGGCAGACTCCTCAGCCCA
TGGGGGCTCTGGGTTTCCTGAGAGCCAGATGTTCTAGAAAGTTGCTGGCTGACTTTTTTT
GTTTGGGGCCTGAGGAAAGGGCTTGGACTGTTAAGAGAAATGTGGCCCCTTATCCTTCCT
CCAGAAAGATGGAATTAATGATGGATGGACCCTACAGAGAGATCTCTCCAGCTGGCTTCC
ATTATGACTGGCAGACATTGCTGACCACAGGGGAGCGAGCCATGGCCTTTTCTTTCTTCA
TGCTCAGACATAAACCTAGCATCTTAATGGAAGGAAAATGAGGGGAACTTCAATTATGAT
TTATTAAAGACAATTTCTATTACACCCTTCTTTATGACAAATGACATTTTAGATGTTAAA
GTAAAAACTTTACCTTTTTTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57101240|ref|XP_533834.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57101240|ref|XP_533834.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               345-501, + strand, RNAz p=0.926313

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               345-501, + strand, RNAz p=0.926313

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK074313, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK074313, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               21-178, gnl|bosTau2|chr22 (40027194-40027037)
               

               
               21-178, gnl|Hg17|chr3 (49045213-49045056)
               

               
               21-178, gnl|Mm7|chr9 (108269073-108269230)
               


               
               266-1044, gnl|bosTau2|chr22 (40025209-40024427)
               

               
               266-1044, gnl|Hg17|chr3 (49043082-49042307)
               

               
               266-1044, gnl|Mm7|chr9 (108271914-108272673)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-178, gnl|bosTau2|chr22 (40027194-40027037)
               

               
               21-178, gnl|Hg17|chr3 (49045213-49045056)
               

               
               21-178, gnl|Mm7|chr9 (108269073-108269230)
               


               
               266-1044, gnl|bosTau2|chr22 (40025209-40024427)
               

               
               266-1044, gnl|Hg17|chr3 (49043082-49042307)
               

               
               266-1044, gnl|Mm7|chr9 (108271914-108272673)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fty (0.351679)
               

               
               ecc (0.345105)
               

               
               cov (0.264306)
               

               
               nms (0.213858)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               ecc (0.345105)
               

               
               cov (0.264306)
               

               
               nms (0.213858)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	21-178, gnl\|bosTau2\|chr22 (40027194-40027037)
	21-178, gnl\|Hg17\|chr3 (49045213-49045056)
	21-178, gnl\|Mm7\|chr9 (108269073-108269230)

	266-1044, gnl\|bosTau2\|chr22 (40025209-40024427)
	266-1044, gnl\|Hg17\|chr3 (49043082-49042307)
	266-1044, gnl\|Mm7\|chr9 (108271914-108272673)

	fty (0.351679)
	ecc (0.345105)
	cov (0.264306)
	nms (0.213858)
	cag (0.151194)
	pla (0.133672)
	eru (0.120048)
	clu (0.119646)
	med (0.116252)
	cty (0.10408)
	ldo (0.0970026)