Non-Coding RNA Search

Ss1.1-Pig4-TMW8055H23.5

Sequence:


               
               AGAGGCTTATCTGAAAAGGACTGGGAGGCCAAGCGAAGAAGGTGAGTTACGGGCGTCCTT
GTCTGGAGAGAGCTTGAGCTACTGCGTTTCGGCAGCCCGCGCAGGGCCTGGTTGGCGGAG
CGTCCAAGCAGGCTGGAGAGTTCAGTCATGTTCCCTCAAGCGGTGATGCGCGCCTTCCGC
AAAAACAAGACCCTACGTTACGGAGTCCCCATGTTGTTGCTGGTTGTTGGAGGTTCTTTT
GGTCTTCGTGAATTTTCACAAATCCGTTATGATGCTGTGAAGATTAAAATTGATCCTGAA
TTGGAAAAAAAACTGAAAATGAATAAAGTGTCATTGGAATCAGAGTACGAGAAAATAAAG
GACTCCACTTTTGATGACTGGAAGAATATTCGAGGACCCAGGCCTTGGGAAGATCCTGAC
CTCCTCCAAGGACGAAATCCAGAAATCCTTAAAACTAAGACAACTTGACTATACTGATTC
TTTTTTTTTTTTTTTAATAAAAATGGTATCAAATGGAATTACACTATGAACTTCTATCCA
TTGGAAAGAAAATTCCAGACCTGCAGAAGCCTGGATGTGACTACTTGATGACAAGTACTC
TTGATAAAAAATCAAATACGGGTTTTTATTTATTTTATTTCCCAACTCTTCCATTTGCAA
ATGAAAGCTACAATGTTGACCACATATATTTTCTACTGCTCAATAAAAATGTGAATGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGCTTATCTGAAAAGGACTGGGAGGCCAAGCGAAGAAGGTGAGTTACGGGCGTCCTT
GTCTGGAGAGAGCTTGAGCTACTGCGTTTCGGCAGCCCGCGCAGGGCCTGGTTGGCGGAG
CGTCCAAGCAGGCTGGAGAGTTCAGTCATGTTCCCTCAAGCGGTGATGCGCGCCTTCCGC
AAAAACAAGACCCTACGTTACGGAGTCCCCATGTTGTTGCTGGTTGTTGGAGGTTCTTTT
GGTCTTCGTGAATTTTCACAAATCCGTTATGATGCTGTGAAGATTAAAATTGATCCTGAA
TTGGAAAAAAAACTGAAAATGAATAAAGTGTCATTGGAATCAGAGTACGAGAAAATAAAG
GACTCCACTTTTGATGACTGGAAGAATATTCGAGGACCCAGGCCTTGGGAAGATCCTGAC
CTCCTCCAAGGACGAAATCCAGAAATCCTTAAAACTAAGACAACTTGACTATACTGATTC
TTTTTTTTTTTTTTTAATAAAAATGGTATCAAATGGAATTACACTATGAACTTCTATCCA
TTGGAAAGAAAATTCCAGACCTGCAGAAGCCTGGATGTGACTACTTGATGACAAGTACTC
TTGATAAAAAATCAAATACGGGTTTTTATTTATTTTATTTCCCAACTCTTCCATTTGCAA
ATGAAAGCTACAATGTTGACCACATATATTTTCTACTGCTCAATAAAAATGTGAATGCTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|7706011|ref|NP_057552.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|7706011|ref|NP_057552.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               350-465, - strand, RNAz p=0.614501

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               350-465, - strand, RNAz p=0.614501

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               17-219, gnl|bosTau2|chr10 (50596327-50596515)
               

               
               17-219, gnl|Hg17|chr14 (69896186-69895986)
               

               
               17-219, gnl|Mm7|chr12 (79447856-79447680)
               


               
               350-720, gnl|bosTau2|chr10 (50609985-50610360)
               

               
               350-720, gnl|Hg17|chr14 (69862921-69862547)
               

               
               350-720, gnl|Mm7|chr12 (79435139-79434765)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-219, gnl|bosTau2|chr10 (50596327-50596515)
               

               
               17-219, gnl|Hg17|chr14 (69896186-69895986)
               

               
               17-219, gnl|Mm7|chr12 (79447856-79447680)
               


               
               350-720, gnl|bosTau2|chr10 (50609985-50610360)
               

               
               350-720, gnl|Hg17|chr14 (69862921-69862547)
               

               
               350-720, gnl|Mm7|chr12 (79435139-79434765)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	17-219, gnl\|bosTau2\|chr10 (50596327-50596515)
	17-219, gnl\|Hg17\|chr14 (69896186-69895986)
	17-219, gnl\|Mm7\|chr12 (79447856-79447680)

	350-720, gnl\|bosTau2\|chr10 (50609985-50610360)
	350-720, gnl\|Hg17\|chr14 (69862921-69862547)
	350-720, gnl\|Mm7\|chr12 (79435139-79434765)

	fco (0.314416)
	liv (0.292569)
	sug (0.254582)
	bla (0.248694)
	cbe (0.239234)
	tes (0.207814)
	nlu (0.191681)
	sto (0.179824)
	sin (0.174948)
	rec (0.17307)
	duo (0.172801)
	cki (0.165235)
	che (0.136314)
	ssp (0.13552)
	thg (0.126791)
	med (0.116252)
	ecc (0.115035)
	spc (0.113366)
	nbm (0.0993246)
	ldo (0.0970026)