Ss1.1-Pig4-TMW8055H24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGGTGAAGCTGGCGGAGCAGGAGGATGGGCGAGCAGTCTGAATGCCAGAATGGATAAC CGTTTTGCCACAGCATTTGTAATCGCTTGTGTACTTAGCCTCATTTCAACCATCTACATG GCAGCCTCAATTGGCACAGACTTCTGGTATGAGTATCGAAGTCCAGTTCAAGAAAATTCC AGCGATTTGAACAAAAGCATCTGGAACGACTTTGCTAGTGATGAGGCAGATGAAAAGACT TATAATGATGCACTTTTTCGATACAATGGCACAGTGGGATTGTGGAGACGGTGTATCACT ATACCCCAAAACACATACTGGTATAACCCACCAGGTATAGAAAGGCCAGAGTCACATGAT ATGGTCACAAGATGCATGAGTTTCACGCTAACTGAGCAGTTCATGGAGAAATTTGTTGAT CCCGGAAACCACAATAGTGGAATTGATCTGCTTCGGACCTATCTTTGGCGTTGCCAGTTC CTTTTACCTTTTGTTAGTCTAGGTTTGATGTGCTTTGGAGCTTTGATTGGACTTTGTGCT TGTATTTGCCGGAGCTTATATCCCACCATTGCCACAGGCATTCTCCATCTTCTTGCAGGT CTGTGTACACTGGGCTCAGTGAGTTGTTACGTTGCTGGAATTGAACTACTCCACCAGAAA CTAGAGCTGCCTGAGAATGTGTCCGGTGAATTCGGATGGTCCTTCTGCCTGGCATGTGTC TCTGCTCCCTTACAGTTCATGGCTTCTGCTCTCTTCATCTGGGCTGCTCATACCAACCGG AAGGAGTACACCTTAATGAAGGCATATCGCGTGGCGTGAGTGGGAAGCTGCCCGCTCTAC AACTGCCATCTTTATGATTTTTGATATTAATATTTCCCTTATCTCCCCCAGTTGCTTTTA ATTTAACTTTTTTTGTGGATATACCATTTTATCCTGAAAACCCATTTTATTTATTCATAC AGATGGTTGTTTCTTAATACCACTAAAACTTACATGGAACCTGTGAGTGATTCCATCTTT CAGACAAACTAATCTAGGTTCAGAGTCCAGACAGAAAAAAATGGGTAGACTCTTGGCATA AATTTGTGAAAGAAAATTAGTAGTAGAGGAGGTTGACCAAAACAAGTTATGCTGATGTCT GTTAGACTTTTCAGTAAAGTTACTGTATTTGTTCAACTGGAAACACTAATTTCTTTGGGA AACTTCTTTTTCATAGTCAAAACTTATATTCACTTTGCCGTAGTAGGTAGCCAGTCAGCC AGAGGTATTAGTGCTATTTTAAGGACTTAGGCTATCTAAAATAGGGAAATTATCTAAAAT CTTTTCCCTAAATATTGGCATATAGGTTCATCTGAGGTGAAATATGGCAGTTGTTTATCT ACACTGTGTCTGTTTACAAGAAAGGAAGTGTTTACATGGAATTTTAACTTCGTAAACTGC AAGAATTCCAGTTCAGCCAGGCAAGAGGATTAACCTTATTTTACTTTTTTTTTTTTTTTA CACTCTCCTTAATATGTCAGTAGGATTTTCAATATCACCAAATCATTTTGGATTTTTGTT CCTTCCCTCCTCGCACACCAGGCTTATTAAAAGAGTGCTTTCTTTTTAACACTACGTTGG GGTCACAGTAAAATTCTCCAACTGCCATCTATTTATTTCACCTAAGTACCGTAAAGAAAG TTCCAACATAATGACCCTCTGGAGCTAGGAAAACTACCACAAGACTTAAAGCATTGGCTG GTCATTAACTTCCAGCTGTGGTCTTTATTTCTTGTGGTGAAATGAAGTGCCTTTCCTTGC CTAATCCCTCCCTGGTGTGTATCAACATGATTTAATGTCTTCTAATTCAGTCATTTTTTT ATAAACATGTCTATAAACATTGAAGTTTAAAAAATCTTATTTATTTATTCCATTACTGTA GTACTTGACAGATTTTGAAAAAAAATGTAACTTAGTAATTTCTTACAAAATTCTAAATCT GTCTTTTTTTAAAAAATAAAAAATGAGAAGAGACTCAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGGTGAAGCTGGCGGAGCAGGAGGATGGGCGAGCAGTCTGAATGCCAGAATGGATAAC CGTTTTGCCACAGCATTTGTAATCGCTTGTGTACTTAGCCTCATTTCAACCATCTACATG GCAGCCTCAATTGGCACAGACTTCTGGTATGAGTATCGAAGTCCAGTTCAAGAAAATTCC AGCGATTTGAACAAAAGCATCTGGAACGACTTTGCTAGTGATGAGGCAGATGAAAAGACT TATAATGATGCACTTTTTCGATACAATGGCACAGTGGGATTGTGGAGACGGTGTATCACT ATACCCCAAAACACATACTGGTATAACCCACCAGGTATAGAAAGGCCAGAGTCACATGAT ATGGTCACAAGATGCATGAGTTTCACGCTAACTGAGCAGTTCATGGAGAAATTTGTTGAT CCCGGAAACCACAATAGTGGAATTGATCTGCTTCGGACCTATCTTTGGCGTTGCCAGTTC CTTTTACCTTTTGTTAGTCTAGGTTTGATGTGCTTTGGAGCTTTGATTGGACTTTGTGCT TGTATTTGCCGGAGCTTATATCCCACCATTGCCACAGGCATTCTCCATCTTCTTGCAGGT CTGTGTACACTGGGCTCAGTGAGTTGTTACGTTGCTGGAATTGAACTACTCCACCAGAAA CTAGAGCTGCCTGAGAATGTGTCCGGTGAATTCGGATGGTCCTTCTGCCTGGCATGTGTC TCTGCTCCCTTACAGTTCATGGCTTCTGCTCTCTTCATCTGGGCTGCTCATACCAACCGG AAGGAGTACACCTTAATGAAGGCATATCGCGTGGCGTGAGTGGGAAGCTGCCCGCTCTAC AACTGCCATCTTTATGATTTTTGATATTAATATTTCCCTTATCTCCCCCAGTTGCTTTTA ATTTAACTTTTTTTGTGGATATACCATTTTATCCTGAAAACCCATTTTATTTATTCATAC AGATGGTTGTTTCTTAATACCACTAAAACTTACATGGAACCTGTGAGTGATTCCATCTTT CAGACAAACTAATCTAGGTTCAGAGTCCAGACAGAAAAAAATGGGTAGACTCTTGGCATA AATTTGTGAAAGAAAATTAGTAGTAGAGGAGGTTGACCAAAACAAGTTATGCTGATGTCT GTTAGACTTTTCAGTAAAGTTACTGTATTTGTTCAACTGGAAACACTAATTTCTTTGGGA AACTTCTTTTTCATAGTCAAAACTTATATTCACTTTGCCGTAGTAGGTAGCCAGTCAGCC AGAGGTATTAGTGCTATTTTAAGGACTTAGGCTATCTAAAATAGGGAAATTATCTAAAAT CTTTTCCCTAAATATTGGCATATAGGTTCATCTGAGGTGAAATATGGCAGTTGTTTATCT ACACTGTGTCTGTTTACAAGAAAGGAAGTGTTTACATGGAATTTTAACTTCGTAAACTGC AAGAATTCCAGTTCAGCCAGGCAAGAGGATTAACCTTATTTTACTTTTTTTTTTTTTTTA CACTCTCCTTAATATGTCAGTAGGATTTTCAATATCACCAAATCATTTTGGATTTTTGTT CCTTCCCTCCTCGCACACCAGGCTTATTAAAAGAGTGCTTTCTTTTTAACACTACGTTGG GGTCACAGTAAAATTCTCCAACTGCCATCTATTTATTTCACCTAAGTACCGTAAAGAAAG TTCCAACATAATGACCCTCTGGAGCTAGGAAAACTACCACAAGACTTAAAGCATTGGCTG GTCATTAACTTCCAGCTGTGGTCTTTATTTCTTGTGGTGAAATGAAGTGCCTTTCCTTGC CTAATCCCTCCCTGGTGTGTATCAACATGATTTAATGTCTTCTAATTCAGTCATTTTTTT ATAAACATGTCTATAAACATTGAAGTTTAAAAAATCTTATTTATTTATTCCATTACTGTA GTACTTGACAGATTTTGAAAAAAAATGTAACTTAGTAATTTCTTACAAAATTCTAAATCT GTCTTTTTTTAAAAAATAAAAAATGAGAAGAGACTCAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 33-231, + strand, RNAz p=0.656306 | |
| 1690-1802, - strand, RNAz p=0.572688 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 33-231, + strand, RNAz p=0.656306 | |
| 1690-1802, - strand, RNAz p=0.572688 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 33-334, gnl|bosTau2|chr1 (22364738-22364437) | |
| 33-334, gnl|Hg17|chr3 (99722977-99722676) | |
| 33-334, gnl|Mm7|chr16 (58665595-58665896) | |
| 347-460, gnl|bosTau2|chr1 (22362052-22361939) | |
| 347-460, gnl|canFam2|chr33 (8354569-8354697) | |
| 347-460, gnl|dasNov1|scaffold_100040 (1128-1248) | |
| 347-460, gnl|echTel1|scaffold_279291 (45149-45271) | |
| 347-460, gnl|fr1|chrUn (86474644-86474526) | |
| 347-460, gnl|galGal2|chr1 (77262655-77262769) | |
| 347-460, gnl|hg17|chr3 (99720401-99720523) | |
| 347-460, gnl|Hg17|chr3 (99720532-99720419) | |
| 347-460, gnl|loxAfr1|scaffold_56920 (7786-7908) | |
| 347-460, gnl|mm7|chr16 (58667590-58667468) | |
| 347-460, gnl|Mm7|chr16 (58667457-58667570) | |
| 347-460, gnl|monDom2|scaffold_25 (19268150-19268272) | |
| 347-460, gnl|oryCun1|scaffold_185535 (44200-44078) | |
| 347-460, gnl|panTro1|chr2 (100906738-100906860) | |
| 347-460, gnl|rheMac2|chr2 (18726470-18726592) | |
| 347-460, gnl|rn3|chr11 (42755089-42755206) | |
| 347-460, gnl|tetNig1|chrUn_random (73003184-73003293) | |
| 347-460, gnl|xenTro1|scaffold_4 (4519750-4519844) | |
| 587-2017, gnl|bosTau2|chr1 (22360313-22358904) | |
| 587-2017, gnl|Hg17|chr3 (99718426-99717013) | |
| 587-2017, gnl|Mm7|chr16 (58668984-58670388) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 33-334, gnl|bosTau2|chr1 (22364738-22364437) | |
| 33-334, gnl|Hg17|chr3 (99722977-99722676) | |
| 33-334, gnl|Mm7|chr16 (58665595-58665896) | |
| 347-460, gnl|bosTau2|chr1 (22362052-22361939) | |
| 347-460, gnl|canFam2|chr33 (8354569-8354697) | |
| 347-460, gnl|dasNov1|scaffold_100040 (1128-1248) | |
| 347-460, gnl|echTel1|scaffold_279291 (45149-45271) | |
| 347-460, gnl|fr1|chrUn (86474644-86474526) | |
| 347-460, gnl|galGal2|chr1 (77262655-77262769) | |
| 347-460, gnl|hg17|chr3 (99720401-99720523) | |
| 347-460, gnl|Hg17|chr3 (99720532-99720419) | |
| 347-460, gnl|loxAfr1|scaffold_56920 (7786-7908) | |
| 347-460, gnl|mm7|chr16 (58667590-58667468) | |
| 347-460, gnl|Mm7|chr16 (58667457-58667570) | |
| 347-460, gnl|monDom2|scaffold_25 (19268150-19268272) | |
| 347-460, gnl|oryCun1|scaffold_185535 (44200-44078) | |
| 347-460, gnl|panTro1|chr2 (100906738-100906860) | |
| 347-460, gnl|rheMac2|chr2 (18726470-18726592) | |
| 347-460, gnl|rn3|chr11 (42755089-42755206) | |
| 347-460, gnl|tetNig1|chrUn_random (73003184-73003293) | |
| 347-460, gnl|xenTro1|scaffold_4 (4519750-4519844) | |
| 587-2017, gnl|bosTau2|chr1 (22360313-22358904) | |
| 587-2017, gnl|Hg17|chr3 (99718426-99717013) | |
| 587-2017, gnl|Mm7|chr16 (58668984-58670388) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| pro (0.512033) | |
| nms (0.427716) | |
| tes (0.415628) | |
| nlu (0.383362) | |
| fhi (0.339155) | |
| lun (0.300978) | |
| hyp (0.285673) | |
| thg (0.253582) | |
| eep (0.245128) | |
| mas (0.210305) | |
| ldo (0.194005) | |
| mgm (0.180343) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| mga (0.160205) | |
| cli (0.152812) | |
| liv (0.146284) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ste (0.135208) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ese (0.126502) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| spc (0.113366) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| nms (0.427716) | |
| tes (0.415628) | |
| nlu (0.383362) | |
| fhi (0.339155) | |
| lun (0.300978) | |
| hyp (0.285673) | |
| thg (0.253582) | |
| eep (0.245128) | |
| mas (0.210305) | |
| ldo (0.194005) | |
| mgm (0.180343) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| mga (0.160205) | |
| cli (0.152812) | |
| liv (0.146284) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ste (0.135208) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ese (0.126502) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| spc (0.113366) |