Non-Coding RNA Search

Ss1.1-Pig4-TMW8055I01.5

Sequence:


               
               ATATATATATATATTTTCTCTTATAGTAAAAGCTGGGAGGTAAGGGCTGGCAAGTTGTCA
GGACTGAAGGTTTGCCCATTCTGCTGCCTCCCATCTCAGCTCCAGGTCCATCCCCCTCTT
TCAACAGAAAGCAATCGGTGACACGAGGTTCCACACTTTTCTTTTCTTCTGTTGCTCTCT
TGACTTAACGTGAAAACAGGGTATATTTTAACAAACTGTCTGTCCCAGGGCCGGGCTGCA
GCTGGGCCTGTGCGCCTTGCTCAACCCGGGACAGGACACTTTTGTTGCACTTAGAGTTTA
CATTTTAATGGATATAAAAACAACTGTGAGAGATGCCTGGGCCTGCAGGAGTCCAGCATT
GCTCAAAAAGCGTGTGTTCTAGTGAACATTTTCATATATATTTATTGGTTATAGCCTGTT
AAAGTATTTTCTTTTTTGTATTATTTATCCCCCAACATTATGTATTTATATGAGGGAAAA
AGGAAAAAAAACTGTACTTTTTTTTAGTATTTACTTGTTATAAAGGACGTTGTGTTCCCT
GTCATGTAAAACCAGCTATTTTAGTTATTATTGTACTCTAGAAAAGAGCTGTAGATTTAT
GTTAAACTCGTACTTATGAGCAATTGTAATTAGTTCTAAAAGGCATGAACTCAGCTCCTA
ATTGTCACTGTATAGTCCTGAATTTGTAGAATTAGAGTTAATTCCCTCTTGGAACTTTCT
TTGTTCTTCCGTAGTTACTTTTTCCCTTACTTAAAAGGGTTGTCTGTCAAACAATTCTTG
AATAAACTTTCTGTTATCAATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATATATATATATTTTCTCTTATAGTAAAAGCTGGGAGGTAAGGGCTGGCAAGTTGTCA
GGACTGAAGGTTTGCCCATTCTGCTGCCTCCCATCTCAGCTCCAGGTCCATCCCCCTCTT
TCAACAGAAAGCAATCGGTGACACGAGGTTCCACACTTTTCTTTTCTTCTGTTGCTCTCT
TGACTTAACGTGAAAACAGGGTATATTTTAACAAACTGTCTGTCCCAGGGCCGGGCTGCA
GCTGGGCCTGTGCGCCTTGCTCAACCCGGGACAGGACACTTTTGTTGCACTTAGAGTTTA
CATTTTAATGGATATAAAAACAACTGTGAGAGATGCCTGGGCCTGCAGGAGTCCAGCATT
GCTCAAAAAGCGTGTGTTCTAGTGAACATTTTCATATATATTTATTGGTTATAGCCTGTT
AAAGTATTTTCTTTTTTGTATTATTTATCCCCCAACATTATGTATTTATATGAGGGAAAA
AGGAAAAAAAACTGTACTTTTTTTTAGTATTTACTTGTTATAAAGGACGTTGTGTTCCCT
GTCATGTAAAACCAGCTATTTTAGTTATTATTGTACTCTAGAAAAGAGCTGTAGATTTAT
GTTAAACTCGTACTTATGAGCAATTGTAATTAGTTCTAAAAGGCATGAACTCAGCTCCTA
ATTGTCACTGTATAGTCCTGAATTTGTAGAATTAGAGTTAATTCCCTCTTGGAACTTTCT
TTGTTCTTCCGTAGTTACTTTTTCCCTTACTTAAAAGGGTTGTCTGTCAAACAATTCTTG
AATAAACTTTCTGTTATCAATTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               616-733, - strand, RNAz p=0.819159

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               616-733, - strand, RNAz p=0.819159

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-804, gnl|bosTau2|chr19 (30605619-30604818)
               

               
               1-804, gnl|Hg17|chr17 (43982016-43981232)
               

               
               1-804, gnl|Mm7|chr11 (96456182-96456968)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-804, gnl|bosTau2|chr19 (30605619-30604818)
               

               
               1-804, gnl|Hg17|chr17 (43982016-43981232)
               

               
               1-804, gnl|Mm7|chr11 (96456182-96456968)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               kid (0.259471)
               

               
               aor (0.195274)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               aor (0.195274)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	1-804, gnl\|bosTau2\|chr19 (30605619-30604818)
	1-804, gnl\|Hg17\|chr17 (43982016-43981232)
	1-804, gnl\|Mm7\|chr11 (96456182-96456968)

	kid (0.259471)
	aor (0.195274)
	cut (0.169924)
	mga (0.160205)
	liv (0.146284)
	spc (0.113366)
	eje (0.0988338)