Non-Coding RNA Search

Ss1.1-Pig4-TMW8055I03.5

Sequence:


               
               GATCCAAGCCACAGTTGTAACCTGTGCCATGGCTGTGGCCACACTGGGTCCTGTAGCCCA
CCGTGTCAGACCAGGGATCAAGCCTGTGTCCTGGGGCTCCAGAGACACAACCAGTCCATT
GAATATATCAAGAACTCCATCAACTGTTGTTTTGTGAGGACTTAGCCTTCTGCGCCTGTC
ATGTTGTCTTGTGGTTAGGACCTCATCAGCTAATCAGAGGAATAAAAAATAATGTAATGG
CAGAGTTCCCGTCGTGGCGCAGTGATTAACGAATCCGACTAGGAACCATGAGGTTGCGGG
TTCAGTCCCTGCCCTTGCTCAGTGGGTTAAGGATCCAGCGTTGCCGTGAGCTGTGGTGTA
GGTCGCAGACGCGGCTCGGATCCCGCGTTGCTGGGGCTCTGGCGTAGGCCGGCGGCTACA
GCTCCCATTGGACCCCTAGCCTGGGAACCTCCATATGCCACAGGAGTGGCCCAAGAAAAT
GGCAAAAAAGACAAAAAATAAAATAAATAAAAACCTAATGGCTAAAGTTGTAAGTAGACA
CACATAGATATATAGATATGTAGATACCTATAGATATTGAAATTAAGAGGCTAATAAGTT
TAAGAAGCTGAAGAAATGTTTATACTGATGATTAAAAGTAAGATACTAAAGTTTGCTTCA
GGGAGTTCCCATCTCTGCTCAGCAGAAGTGAATCTGACTGGCATCCAAGATGAGAAGGGA
GACAGTCCTCTCTCCAAAAGGTTTATCCCGAAATTTTAAAGAAAAAAGGGAGCTCCGGTC
GAGGCTCAGGGATTGACTCACCCGATTAGCATCCATGAGGACTCGGGTTCAATCCCTGGC
CTCCCTCGATGGGTTCAGGATCTGACATTGCCATGATCTGTGGTGTAGGTCACAGACAAG
GCTTGGATCCCACGTTGCTGTGGTGCAGGCCAGCAGCTACAGCTCCAATTCGACCCCTAG
CCTGGGAACCTCCATATGCTGCTGGTGCTGCCCTAAAAAGACAAAAAAAAAAAAAAAAAA
ATGGTTTCGGTTGTTACTGAAGTATGATTGACTGAGGTCTCGGGTGTGCAGCAAAGTGAT
TCAGTCACACACGTTGTTTCCCTTGTATCTTCTTACCAAATATTGGCTGTAGTTCCCTGT
GCTGTGCAGTAGGTCCTTGTTGCTTATCTGTTTTGTATATACTAGGGTATGTGTGTTAAT
TTCAAATTCTTAATTTATTCCTCACCCCTTCCCCCTTTTGTAATCATAAATTTGTTTTCT
ATGTCTGTGAATCTATTTCTGTTTTATAAATAAGTTCATTTGTATATTTTTTAGATTCCA
CATATGAATGATATCATATAATATTTGTTGAAGTTTGTTTTAGTTTTATTTAAAAGTAAG
GATACAATTCCATTAAAAATACATTTCATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCCAAGCCACAGTTGTAACCTGTGCCATGGCTGTGGCCACACTGGGTCCTGTAGCCCA
CCGTGTCAGACCAGGGATCAAGCCTGTGTCCTGGGGCTCCAGAGACACAACCAGTCCATT
GAATATATCAAGAACTCCATCAACTGTTGTTTTGTGAGGACTTAGCCTTCTGCGCCTGTC
ATGTTGTCTTGTGGTTAGGACCTCATCAGCTAATCAGAGGAATAAAAAATAATGTAATGG
CAGAGTTCCCGTCGTGGCGCAGTGATTAACGAATCCGACTAGGAACCATGAGGTTGCGGG
TTCAGTCCCTGCCCTTGCTCAGTGGGTTAAGGATCCAGCGTTGCCGTGAGCTGTGGTGTA
GGTCGCAGACGCGGCTCGGATCCCGCGTTGCTGGGGCTCTGGCGTAGGCCGGCGGCTACA
GCTCCCATTGGACCCCTAGCCTGGGAACCTCCATATGCCACAGGAGTGGCCCAAGAAAAT
GGCAAAAAAGACAAAAAATAAAATAAATAAAAACCTAATGGCTAAAGTTGTAAGTAGACA
CACATAGATATATAGATATGTAGATACCTATAGATATTGAAATTAAGAGGCTAATAAGTT
TAAGAAGCTGAAGAAATGTTTATACTGATGATTAAAAGTAAGATACTAAAGTTTGCTTCA
GGGAGTTCCCATCTCTGCTCAGCAGAAGTGAATCTGACTGGCATCCAAGATGAGAAGGGA
GACAGTCCTCTCTCCAAAAGGTTTATCCCGAAATTTTAAAGAAAAAAGGGAGCTCCGGTC
GAGGCTCAGGGATTGACTCACCCGATTAGCATCCATGAGGACTCGGGTTCAATCCCTGGC
CTCCCTCGATGGGTTCAGGATCTGACATTGCCATGATCTGTGGTGTAGGTCACAGACAAG
GCTTGGATCCCACGTTGCTGTGGTGCAGGCCAGCAGCTACAGCTCCAATTCGACCCCTAG
CCTGGGAACCTCCATATGCTGCTGGTGCTGCCCTAAAAAGACAAAAAAAAAAAAAAAAAA
ATGGTTTCGGTTGTTACTGAAGTATGATTGACTGAGGTCTCGGGTGTGCAGCAAAGTGAT
TCAGTCACACACGTTGTTTCCCTTGTATCTTCTTACCAAATATTGGCTGTAGTTCCCTGT
GCTGTGCAGTAGGTCCTTGTTGCTTATCTGTTTTGTATATACTAGGGTATGTGTGTTAAT
TTCAAATTCTTAATTTATTCCTCACCCCTTCCCCCTTTTGTAATCATAAATTTGTTTTCT
ATGTCTGTGAATCTATTTCTGTTTTATAAATAAGTTCATTTGTATATTTTTTAGATTCCA
CATATGAATGATATCATATAATATTTGTTGAAGTTTGTTTTAGTTTTATTTAAAAGTAAG
GATACAATTCCATTAAAAATACATTTCATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               1057-1348, gnl|bosTau2|chr1 (42555413-42555118)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1057-1348, gnl|bosTau2|chr1 (42555413-42555118)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               aor (0.390549)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               thg (0.126791)
               

               
               med (0.116252)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               thg (0.126791)
               

               
               med (0.116252)

	aor (0.390549)
	mgp (0.230681)
	fcc (0.197785)
	ill (0.175593)
	cut (0.169924)
	cki (0.165235)
	fco (0.157208)
	isp (0.150376)
	spl (0.143184)
	pty (0.142714)
	thg (0.126791)
	med (0.116252)