Non-Coding RNA Search

Ss1.1-Pig4-TMW8055I20.3

Sequence:


               
               GATACTCGGGGCTATGGAGTCTCAGGTGGCGGGGGGCCCAGCCGGCCCGGCCCTGCCCAA
CGGGCCACTCCTTGGGACAAACGGAGCCACTGATGACAGCAAGACCAACCTCATTGTCAA
CTACCTGCCCCAGAACATGACCCAGGATGAGTTCAAGAGCCTCTTCGGCAGCATTGGCGA
CATTGAGTCCTGCAAGTTGGTTCGGGACAAAATCACAGGGCAGAGCCTCGGCTACGGGTT
TGTGAACTACTCTGACCCCAACGATGCAGACAAAGCCATCAACACCCTCAACGGCCTCAA
ACTGCAGACGAAGACCATCAAGGTGTCCTACGCCAGACCCAGCTCTGCCTCCATCCGGGA
TGCAAACCTGTACGTCAGCGGGCTCCCCAAGACCATGAGCCAGAAAGAAATGGAGCAGCT
CTTCTCCCAGTACGGCCGCATCATCACTTCTCGCATCCTGGTGGACCAGGTCACAGGTGT
CTCTCGGGGTGTGGGATTCATCCGCTTTGACAAAAGGATTGAGGCCGAGGAGGCCATCAA
AGGACTGAACGGGCAGAAGCCGCTGGGCGCGGCCGAGCCCATCACGGTCAAGTTTGCCAA
CAACCCAAGTCAGAAGACCGGGCAGGCCCTGCTCACTCATCTCTACCAGTCCTCAGCCCG
GCGCTACGCAGGCCCCCTGCACCATCAGACACAGCGCTTCCGGCTCGACAATTTGCTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATACTCGGGGCTATGGAGTCTCAGGTGGCGGGGGGCCCAGCCGGCCCGGCCCTGCCCAA
CGGGCCACTCCTTGGGACAAACGGAGCCACTGATGACAGCAAGACCAACCTCATTGTCAA
CTACCTGCCCCAGAACATGACCCAGGATGAGTTCAAGAGCCTCTTCGGCAGCATTGGCGA
CATTGAGTCCTGCAAGTTGGTTCGGGACAAAATCACAGGGCAGAGCCTCGGCTACGGGTT
TGTGAACTACTCTGACCCCAACGATGCAGACAAAGCCATCAACACCCTCAACGGCCTCAA
ACTGCAGACGAAGACCATCAAGGTGTCCTACGCCAGACCCAGCTCTGCCTCCATCCGGGA
TGCAAACCTGTACGTCAGCGGGCTCCCCAAGACCATGAGCCAGAAAGAAATGGAGCAGCT
CTTCTCCCAGTACGGCCGCATCATCACTTCTCGCATCCTGGTGGACCAGGTCACAGGTGT
CTCTCGGGGTGTGGGATTCATCCGCTTTGACAAAAGGATTGAGGCCGAGGAGGCCATCAA
AGGACTGAACGGGCAGAAGCCGCTGGGCGCGGCCGAGCCCATCACGGTCAAGTTTGCCAA
CAACCCAAGTCAGAAGACCGGGCAGGCCCTGCTCACTCATCTCTACCAGTCCTCAGCCCG
GCGCTACGCAGGCCCCCTGCACCATCAGACACAGCGCTTCCGGCTCGACAATTTGCTCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|49355765|ref|NP_115657.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|49355765|ref|NP_115657.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               474-633, + strand, RNAz p=0.763534

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               474-633, + strand, RNAz p=0.763534

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-219, gnl|bosTau2|chr7 (11331208-11330990)
               

               
               1-219, gnl|canFam2|chr20 (52895744-52895603)
               

               
               1-219, gnl|danRer3|chr2 (33393417-33393282)
               

               
               1-219, gnl|dasNov1|scaffold_87380 (2147-2285)
               

               
               1-219, gnl|echTel1|scaffold_321918 (46590-46728)
               

               
               1-219, gnl|fr1|chrUn (67691055-67690915)
               

               
               1-219, gnl|hg17|chr19 (11438416-11438557)
               

               
               1-219, gnl|Hg17|chr19 (11438640-11438422)
               

               
               1-219, gnl|loxAfr1|scaffold_40114 (36535-36676)
               

               
               1-219, gnl|mm7|chr9 (21915755-21915896)
               

               
               1-219, gnl|Mm7|chr9 (21915979-21915761)
               

               
               1-219, gnl|monDom2|scaffold_106 (3521734-3521876)
               

               
               1-219, gnl|oryCun1|scaffold_206497 (89982-90120)
               

               
               1-219, gnl|panTro1|chr20 (11845995-11846136)
               

               
               1-219, gnl|rheMac2|chr19 (11288924-11289065)
               

               
               1-219, gnl|rn3|chr8 (21143631-21143772)
               

               
               1-219, gnl|tetNig1|chr3 (11703688-11703828)
               

               
               1-219, gnl|xenTro1|scaffold_468 (830933-830791)
               


               
               474-703, gnl|bosTau2|chr7 (11326662-11326433)
               

               
               474-703, gnl|Hg17|chr19 (11430104-11429875)
               

               
               474-703, gnl|Mm7|chr9 (21905442-21905213)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-219, gnl|bosTau2|chr7 (11331208-11330990)
               

               
               1-219, gnl|canFam2|chr20 (52895744-52895603)
               

               
               1-219, gnl|danRer3|chr2 (33393417-33393282)
               

               
               1-219, gnl|dasNov1|scaffold_87380 (2147-2285)
               

               
               1-219, gnl|echTel1|scaffold_321918 (46590-46728)
               

               
               1-219, gnl|fr1|chrUn (67691055-67690915)
               

               
               1-219, gnl|hg17|chr19 (11438416-11438557)
               

               
               1-219, gnl|Hg17|chr19 (11438640-11438422)
               

               
               1-219, gnl|loxAfr1|scaffold_40114 (36535-36676)
               

               
               1-219, gnl|mm7|chr9 (21915755-21915896)
               

               
               1-219, gnl|Mm7|chr9 (21915979-21915761)
               

               
               1-219, gnl|monDom2|scaffold_106 (3521734-3521876)
               

               
               1-219, gnl|oryCun1|scaffold_206497 (89982-90120)
               

               
               1-219, gnl|panTro1|chr20 (11845995-11846136)
               

               
               1-219, gnl|rheMac2|chr19 (11288924-11289065)
               

               
               1-219, gnl|rn3|chr8 (21143631-21143772)
               

               
               1-219, gnl|tetNig1|chr3 (11703688-11703828)
               

               
               1-219, gnl|xenTro1|scaffold_468 (830933-830791)
               


               
               474-703, gnl|bosTau2|chr7 (11326662-11326433)
               

               
               474-703, gnl|Hg17|chr19 (11430104-11429875)
               

               
               474-703, gnl|Mm7|chr9 (21905442-21905213)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	1-219, gnl\|bosTau2\|chr7 (11331208-11330990)
	1-219, gnl\|canFam2\|chr20 (52895744-52895603)
	1-219, gnl\|danRer3\|chr2 (33393417-33393282)
	1-219, gnl\|dasNov1\|scaffold_87380 (2147-2285)
	1-219, gnl\|echTel1\|scaffold_321918 (46590-46728)
	1-219, gnl\|fr1\|chrUn (67691055-67690915)
	1-219, gnl\|hg17\|chr19 (11438416-11438557)
	1-219, gnl\|Hg17\|chr19 (11438640-11438422)
	1-219, gnl\|loxAfr1\|scaffold_40114 (36535-36676)
	1-219, gnl\|mm7\|chr9 (21915755-21915896)
	1-219, gnl\|Mm7\|chr9 (21915979-21915761)
	1-219, gnl\|monDom2\|scaffold_106 (3521734-3521876)
	1-219, gnl\|oryCun1\|scaffold_206497 (89982-90120)
	1-219, gnl\|panTro1\|chr20 (11845995-11846136)
	1-219, gnl\|rheMac2\|chr19 (11288924-11289065)
	1-219, gnl\|rn3\|chr8 (21143631-21143772)
	1-219, gnl\|tetNig1\|chr3 (11703688-11703828)
	1-219, gnl\|xenTro1\|scaffold_468 (830933-830791)

	474-703, gnl\|bosTau2\|chr7 (11326662-11326433)
	474-703, gnl\|Hg17\|chr19 (11430104-11429875)
	474-703, gnl\|Mm7\|chr9 (21905442-21905213)