Non-Coding RNA Search

Ss1.1-Pig4-TMW8055J04.5

Sequence:


               
               AGCCGCGGAATCGCCGCCAGGTCGGTTTTCTCTCCACGCTGCCCGTCGCGCCGCCAGCCC
GCCCGCCGCCGCCGCCGCAGCAGCCATGGGAGTGCAGGTGGAGACCATCTCCCCCGGAGA
CGGGCGCACCTTCCCGAAGCGCGGCCAGACCTGCGTGGTGCACTACACGGGGATGCTTGA
AGATGGAAAGAAATTCGACTCCTCCCGGGACAGAAACAAGCCCTTTAAGTTTGTGCTAGG
CAAGCAGGAGGTGATCCGAGGCTGGGAAGAAGGGGTCGCCCAGATGAGTGTGGGTCAGAG
AGCCAAGCTGACTATCTCCCCAGACTATGCCTACGGTGCCACTGGGCACCCAGGCATCAT
CCCACCGAATGCCACTCTCGTCTTTGACGTGGAGCTTCTAAAACTGGAATGACAGGAATG
GCCTCCTCCCTGCGCTCCCCATTCTTGGATGTGCCATGGAGGGATCTGGTGCCTCCAGAC
GCGCACGAGTGCGCACCGGGCTTTTGCTGGCGTCGTACTCGGCTCTGTGTAAACATCTTC
CCTGACCGAGTGTGTTCTGTCACTGGCTTTGCTCTTCCCCTTTCTCCTCGTATGTGTGTC
GACCTGAACTATATGCCGTAAACCTCAAGTTACTCATTTTAGTTTGTTTTGTTTTGGGGT
GAAGATTGAGTTTCCGTCTTTTGAATCTAGAGTTCCAGTTAAGTATTAGTCAAGTATTAA
CAGCACAAGCAATGGGTTAACTTTAGACTAGGAATTGGGGGTGGGGGGGCAAGAAGTTTT
ATTTTATTTTATTTTTTTTGGATGAAATTTTTATCTATTATATATTAAACATTCTTGCTG
CTGCGCTGCAAAGCCATAGCAGATTTGAGGCGCTTTCGAGGGCCGAATTATTCTCCAAGT
TGAGAGATGTCCTCGGGTTGAATTAAAAGCCCTCCCCAAAACGAAAGTGGGAAGAGGGAG
AGCCTTGGCCTCCACTGCCCCACCCCCACCCTCCCCGCACACCCGCTGCCTTTTGAAAGC
AGATCGTTTTCACTGAGCTGTTGGACACTACAGGTGTCTGTCCTGGGGCCAGCAGGGACC
TCTGAAGCCTTCCTCGCGGCCTGGCCTTTTTTTCTTTTTCCTTTTTTTTTTAATCCTGTG
GTTTTTCTAATGGATATTCAGGACTTTTATAATCTCATAGCTATCCAAGCTCCACTTCCT
AAATTTTAAGAACTTTAATCGAACGTTTAAATTGAAGGTGCTGTTTGTAGACACTTAACA
CCCATGAAAGCCCAGCCATCATGACAAATCCTTGAGTGTTGTCTTAAGAAAATGATGCTG
GTCATCACAGCTTCAGCATCTCCTGTTTTTTGATGCTCAGCTCCCCCTGCTGACCTCAGA
GTTTTCCTGGCTTCTCCTTCCCCCTCTCACCCCTTTGCTGTCCCGTGTAGTGACTTGGTG
AGAGAAATTGCTGCCTACTCCCCCACCCCCTGCACTACATATGAGTTTCAAGTTTTATTA
TTGCAATAAAAGTGCTTTATGCTGGCTTTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCGCGGAATCGCCGCCAGGTCGGTTTTCTCTCCACGCTGCCCGTCGCGCCGCCAGCCC
GCCCGCCGCCGCCGCCGCAGCAGCCATGGGAGTGCAGGTGGAGACCATCTCCCCCGGAGA
CGGGCGCACCTTCCCGAAGCGCGGCCAGACCTGCGTGGTGCACTACACGGGGATGCTTGA
AGATGGAAAGAAATTCGACTCCTCCCGGGACAGAAACAAGCCCTTTAAGTTTGTGCTAGG
CAAGCAGGAGGTGATCCGAGGCTGGGAAGAAGGGGTCGCCCAGATGAGTGTGGGTCAGAG
AGCCAAGCTGACTATCTCCCCAGACTATGCCTACGGTGCCACTGGGCACCCAGGCATCAT
CCCACCGAATGCCACTCTCGTCTTTGACGTGGAGCTTCTAAAACTGGAATGACAGGAATG
GCCTCCTCCCTGCGCTCCCCATTCTTGGATGTGCCATGGAGGGATCTGGTGCCTCCAGAC
GCGCACGAGTGCGCACCGGGCTTTTGCTGGCGTCGTACTCGGCTCTGTGTAAACATCTTC
CCTGACCGAGTGTGTTCTGTCACTGGCTTTGCTCTTCCCCTTTCTCCTCGTATGTGTGTC
GACCTGAACTATATGCCGTAAACCTCAAGTTACTCATTTTAGTTTGTTTTGTTTTGGGGT
GAAGATTGAGTTTCCGTCTTTTGAATCTAGAGTTCCAGTTAAGTATTAGTCAAGTATTAA
CAGCACAAGCAATGGGTTAACTTTAGACTAGGAATTGGGGGTGGGGGGGCAAGAAGTTTT
ATTTTATTTTATTTTTTTTGGATGAAATTTTTATCTATTATATATTAAACATTCTTGCTG
CTGCGCTGCAAAGCCATAGCAGATTTGAGGCGCTTTCGAGGGCCGAATTATTCTCCAAGT
TGAGAGATGTCCTCGGGTTGAATTAAAAGCCCTCCCCAAAACGAAAGTGGGAAGAGGGAG
AGCCTTGGCCTCCACTGCCCCACCCCCACCCTCCCCGCACACCCGCTGCCTTTTGAAAGC
AGATCGTTTTCACTGAGCTGTTGGACACTACAGGTGTCTGTCCTGGGGCCAGCAGGGACC
TCTGAAGCCTTCCTCGCGGCCTGGCCTTTTTTTCTTTTTCCTTTTTTTTTTAATCCTGTG
GTTTTTCTAATGGATATTCAGGACTTTTATAATCTCATAGCTATCCAAGCTCCACTTCCT
AAATTTTAAGAACTTTAATCGAACGTTTAAATTGAAGGTGCTGTTTGTAGACACTTAACA
CCCATGAAAGCCCAGCCATCATGACAAATCCTTGAGTGTTGTCTTAAGAAAATGATGCTG
GTCATCACAGCTTCAGCATCTCCTGTTTTTTGATGCTCAGCTCCCCCTGCTGACCTCAGA
GTTTTCCTGGCTTCTCCTTCCCCCTCTCACCCCTTTGCTGTCCCGTGTAGTGACTTGGTG
AGAGAAATTGCTGCCTACTCCCCCACCCCCTGCACTACATATGAGTTTCAAGTTTTATTA
TTGCAATAAAAGTGCTTTATGCTGGCTTTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|59858515|gb|AAX09092.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|59858515|gb|AAX09092.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               320-479, - strand, RNAz p=0.834301

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               320-479, - strand, RNAz p=0.834301

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-933, gnl|bosTau2|chr11 (24226464-24227406)
               

               
               1-933, gnl|Hg17|chr6 (63979342-63980289)
               

               
               1-933, gnl|Mm7|chr14 (71317266-71316354)
               


               
               1386-1559, gnl|bosTau2|chr3 (26554616-26554449)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-933, gnl|bosTau2|chr11 (24226464-24227406)
               

               
               1-933, gnl|Hg17|chr6 (63979342-63980289)
               

               
               1-933, gnl|Mm7|chr14 (71317266-71316354)
               


               
               1386-1559, gnl|bosTau2|chr3 (26554616-26554449)

Expressed library(ies): 47 entry(ies)

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Expressed library(ies): 47 entry(ies)

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               cag (1.05836)
               

               
               eru (0.960384)
               

               
               cty (0.936719)
               

               
               nco (0.808669)
               

               
               cli (0.764059)
               

               
               nep (0.7357)
               

               
               clu (0.717875)
               

               
               fty (0.703359)
               

               
               hlv (0.696282)
               

               
               fcc (0.593354)
               

               
               col (0.585023)
               

               
               nlu (0.575043)
               

               
               duo (0.518403)
               

               
               nbm (0.496623)
               

               
               eep (0.490256)
               

               
               csp (0.483559)
               

               
               cly (0.482567)
               

               
               fat (0.442282)
               

               
               hyp (0.42851)
               

               
               nms (0.427716)
               

               
               lnt (0.426925)
               

               
               nca (0.410621)
               

               
               cov (0.396458)
               

               
               jej (0.395687)
               

               
               ese (0.379507)
               

               
               fbs (0.350693)
               

               
               nje (0.33184)
               

               
               sme (0.305437)
               

               
               eje (0.296501)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               ecc (0.23007)
               

               
               cbl (0.229595)
               

               
               mas (0.210305)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 47 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (1.05836)
               

               
               eru (0.960384)
               

               
               cty (0.936719)
               

               
               nco (0.808669)
               

               
               cli (0.764059)
               

               
               nep (0.7357)
               

               
               clu (0.717875)
               

               
               fty (0.703359)
               

               
               hlv (0.696282)
               

               
               fcc (0.593354)
               

               
               col (0.585023)
               

               
               nlu (0.575043)
               

               
               duo (0.518403)
               

               
               nbm (0.496623)
               

               
               eep (0.490256)
               

               
               csp (0.483559)
               

               
               cly (0.482567)
               

               
               fat (0.442282)
               

               
               hyp (0.42851)
               

               
               nms (0.427716)
               

               
               lnt (0.426925)
               

               
               nca (0.410621)
               

               
               cov (0.396458)
               

               
               jej (0.395687)
               

               
               ese (0.379507)
               

               
               fbs (0.350693)
               

               
               nje (0.33184)
               

               
               sme (0.305437)
               

               
               eje (0.296501)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               ecc (0.23007)
               

               
               cbl (0.229595)
               

               
               mas (0.210305)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	1-933, gnl\|bosTau2\|chr11 (24226464-24227406)
	1-933, gnl\|Hg17\|chr6 (63979342-63980289)
	1-933, gnl\|Mm7\|chr14 (71317266-71316354)

	1386-1559, gnl\|bosTau2\|chr3 (26554616-26554449)

	cag (1.05836)
	eru (0.960384)
	cty (0.936719)
	nco (0.808669)
	cli (0.764059)
	nep (0.7357)
	clu (0.717875)
	fty (0.703359)
	hlv (0.696282)
	fcc (0.593354)
	col (0.585023)
	nlu (0.575043)
	duo (0.518403)
	nbm (0.496623)
	eep (0.490256)
	csp (0.483559)
	cly (0.482567)
	fat (0.442282)
	hyp (0.42851)
	nms (0.427716)
	lnt (0.426925)
	nca (0.410621)
	cov (0.396458)
	jej (0.395687)
	ese (0.379507)
	fbs (0.350693)
	nje (0.33184)
	sme (0.305437)
	eje (0.296501)
	fce (0.271592)
	nmm (0.265604)
	ute (0.265569)
	ecc (0.23007)
	cbl (0.229595)
	mas (0.210305)
	ill (0.175593)
	ton (0.1755)
	sin (0.174948)
	eye (0.170503)
	fco (0.157208)
	tbr (0.154178)
	pty (0.142714)
	cst (0.140036)
	ssp (0.13552)
	bla (0.124347)
	ebs (0.118301)
	jca (0.11396)