Ss1.1-Pig4-TMW8055J05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGCCCGGGACTTCCACTCGTGCGTGAGGCGAGCGGAGCCGGAGACAAGACCAGAGGCC GTACTCGGGATTTGACAAGATGGCCGGGCTGCCCCGCAGGATTATCAAGGAAACCCAGCG TTTGCTGGCAGAACCAGTTCCCGGCATTAAAGCAGAACCAGATGAGAGCAACGCTCGTTA TTTTCATGTGGTCATAGCTGGCCCCCAGGATTCCCCCTTTGAGGGAGGGACTTTTAAACT TGAACTATTCCTTCCAGAAGAATACCCAATGGCAGCCCCTAAAGTCCGTTTCATGACCAA AATTTATCATCCTAATGTAGACAAGTTGGGAAGAATATGTTTAGATATTTTGAAAGATAA GTGGTCCCCAGCACTGCAGATCCGCACAGTTCTGCTATCGATCCAGGCTTTGTTAAGCGC TCCCAATCCAGATGATCCATTAGCAAATGATGTAGCGGAGCAGTGGAAGACCAACGAAGC CCAAGCCATAGAAACAGCTAGAGCATGGACTAGGCTATATGCCATGAATAATATTTAAAT CGATTGATCATCAAGTGTGCATCACTTCTCCTGTTCTGCCAAGACTTCTTCCTTTTTTGT TTGCATTTAATGGACACAGTCTTAGAAACATTACAGAATAAAAGCCCAGACATCTTCAGT CCTTTGGTGATTAAATGCACATTAGCAAATCTATGTCTTGTCCTGATTCACTGTTGTAAA GCATGAGCAGAGGCTAGAAGTACCATCCGGATTGTTGTGAAACGTTTAAAAGCAGTGGCC CTCTCTGCTTTTATTCTTTCCCCCATCATGGTTTAAGTATAAAGCACTGTGAATGAAGGT AGTCGTCAGGGTTAGCTGCAGGGGTGTGGGTGTTTTTCTTTTTTGGGGGGGAGTAGTTTT AATTTTATGGGCTCCTTTCCCCCTTCTTATGGTGACCTAATTGCATTGGTTAAAAGCAGC TAACCACTTCTTTAGAATATGCTCTCTAGCCAAGTCTAACTTTATTTAGACGCTGTAGAT GGACAAGCTTGATTGTTTGAACCAAAATGGGAACATTAAACAAACATCACAGCCCTCACT AATAACATTGTGATTTTGCTGTCAAGTATAGAGTCCTCCCTTCAGGAAAAAGCTTGTGAC CATTTTGTATGGCTTGTCTGGAAACTTCTGTAAATCTTATGTTTTAGTAAAATATTTTTT GTTATTCTACTTTGCCTTTGTACAGTTTATTTTACTGTGTTTATTTCATTTTCCCAATGT GACAATCGTATTTAAAAATTAAAACTGATGGAACATTCTGTTTTAGTCTTCACCACCTAA CAAATTGAATGGCAAGAGAGAGATTTTGCCAGTGTCTTTACACTGATGCAAATTGGTGTT AAGATATCACTAAATGGAGTATTTATAAGCTGGCCCGAGCATGCCTGAAGCATCGGTATC TGACATTTTTTTACCTCCTAGAAATTTGAAATAAATGTGTTTGTGTCGTCTGATTAGTTC GATCATTAGTGTCTTGCCACAGTGTTTGAAAATTACTGTATAGGAGAGTCGCAGCACAGC CACCGTTGTGACTGGCTTTGTGTGGGACTTTGACACGTGCCACATTTGTGTCTGGCATTT GGGTTATGACCTTTCTCTTAGTTCTTATCTCAGAATTTCCTGTGTGACCACTGGTATATG TTACTAGGAAACACCAATCTGATAATCATGCGGGGTTTGCTGAGGCATTTACGAGTCTTC CTTGTAGACGTGCTAAGCAAATCTCAGGCAGCCAGCTTGCATAAGTGTCATCAGAAAGGT TTCTTTCTTAGCATCAAATCCTCAGTTAATGATTCTTACTGTCATCCTCTGACATTTGCT CCAGGAGCTCCTTTTATTCTTTAATTTGATATTCAGAAATTTTTTTCTGTATTGACAGAG TTCTCACAAAACTGTTCTTTCCCACCCCTCCATATCTAGTTCCTGATTCTGGTTCTTTTT AAGACCTAAATGTAGTCAGTTATAAGGATGTAAATGTTAACCTGTGAGTTGGAACCTTTG TCTCTTGGAGTTTAAGGTAATGGATGTTGTAGCCCATCTTAATTTTCCCGACTCTTATTC TCGTAACTTCTGGTTCCCGACTCTTATTCTCGTAACTTCTGGAGTTTCTTCAGAATGTGG TGTATTTTATTGTGCTCCTCTGTAAGATGAAGAATTATCTATTAAAATTACATTTTCAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGCCCGGGACTTCCACTCGTGCGTGAGGCGAGCGGAGCCGGAGACAAGACCAGAGGCC GTACTCGGGATTTGACAAGATGGCCGGGCTGCCCCGCAGGATTATCAAGGAAACCCAGCG TTTGCTGGCAGAACCAGTTCCCGGCATTAAAGCAGAACCAGATGAGAGCAACGCTCGTTA TTTTCATGTGGTCATAGCTGGCCCCCAGGATTCCCCCTTTGAGGGAGGGACTTTTAAACT TGAACTATTCCTTCCAGAAGAATACCCAATGGCAGCCCCTAAAGTCCGTTTCATGACCAA AATTTATCATCCTAATGTAGACAAGTTGGGAAGAATATGTTTAGATATTTTGAAAGATAA GTGGTCCCCAGCACTGCAGATCCGCACAGTTCTGCTATCGATCCAGGCTTTGTTAAGCGC TCCCAATCCAGATGATCCATTAGCAAATGATGTAGCGGAGCAGTGGAAGACCAACGAAGC CCAAGCCATAGAAACAGCTAGAGCATGGACTAGGCTATATGCCATGAATAATATTTAAAT CGATTGATCATCAAGTGTGCATCACTTCTCCTGTTCTGCCAAGACTTCTTCCTTTTTTGT TTGCATTTAATGGACACAGTCTTAGAAACATTACAGAATAAAAGCCCAGACATCTTCAGT CCTTTGGTGATTAAATGCACATTAGCAAATCTATGTCTTGTCCTGATTCACTGTTGTAAA GCATGAGCAGAGGCTAGAAGTACCATCCGGATTGTTGTGAAACGTTTAAAAGCAGTGGCC CTCTCTGCTTTTATTCTTTCCCCCATCATGGTTTAAGTATAAAGCACTGTGAATGAAGGT AGTCGTCAGGGTTAGCTGCAGGGGTGTGGGTGTTTTTCTTTTTTGGGGGGGAGTAGTTTT AATTTTATGGGCTCCTTTCCCCCTTCTTATGGTGACCTAATTGCATTGGTTAAAAGCAGC TAACCACTTCTTTAGAATATGCTCTCTAGCCAAGTCTAACTTTATTTAGACGCTGTAGAT GGACAAGCTTGATTGTTTGAACCAAAATGGGAACATTAAACAAACATCACAGCCCTCACT AATAACATTGTGATTTTGCTGTCAAGTATAGAGTCCTCCCTTCAGGAAAAAGCTTGTGAC CATTTTGTATGGCTTGTCTGGAAACTTCTGTAAATCTTATGTTTTAGTAAAATATTTTTT GTTATTCTACTTTGCCTTTGTACAGTTTATTTTACTGTGTTTATTTCATTTTCCCAATGT GACAATCGTATTTAAAAATTAAAACTGATGGAACATTCTGTTTTAGTCTTCACCACCTAA CAAATTGAATGGCAAGAGAGAGATTTTGCCAGTGTCTTTACACTGATGCAAATTGGTGTT AAGATATCACTAAATGGAGTATTTATAAGCTGGCCCGAGCATGCCTGAAGCATCGGTATC TGACATTTTTTTACCTCCTAGAAATTTGAAATAAATGTGTTTGTGTCGTCTGATTAGTTC GATCATTAGTGTCTTGCCACAGTGTTTGAAAATTACTGTATAGGAGAGTCGCAGCACAGC CACCGTTGTGACTGGCTTTGTGTGGGACTTTGACACGTGCCACATTTGTGTCTGGCATTT GGGTTATGACCTTTCTCTTAGTTCTTATCTCAGAATTTCCTGTGTGACCACTGGTATATG TTACTAGGAAACACCAATCTGATAATCATGCGGGGTTTGCTGAGGCATTTACGAGTCTTC CTTGTAGACGTGCTAAGCAAATCTCAGGCAGCCAGCTTGCATAAGTGTCATCAGAAAGGT TTCTTTCTTAGCATCAAATCCTCAGTTAATGATTCTTACTGTCATCCTCTGACATTTGCT CCAGGAGCTCCTTTTATTCTTTAATTTGATATTCAGAAATTTTTTTCTGTATTGACAGAG TTCTCACAAAACTGTTCTTTCCCACCCCTCCATATCTAGTTCCTGATTCTGGTTCTTTTT AAGACCTAAATGTAGTCAGTTATAAGGATGTAAATGTTAACCTGTGAGTTGGAACCTTTG TCTCTTGGAGTTTAAGGTAATGGATGTTGTAGCCCATCTTAATTTTCCCGACTCTTATTC TCGTAACTTCTGGTTCCCGACTCTTATTCTCGTAACTTCTGGAGTTTCTTCAGAATGTGG TGTATTTTATTGTGCTCCTCTGTAAGATGAAGAATTATCTATTAAAATTACATTTTCAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 121-236, - strand, RNAz p=0.952955 | |
| 357-474, - strand, RNAz p=0.916569 | |
| 963-1081, - strand, RNAz p=0.751847 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 121-236, - strand, RNAz p=0.952955 | |
| 357-474, - strand, RNAz p=0.916569 | |
| 963-1081, - strand, RNAz p=0.751847 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 42-1209, gnl|bosTau2|chr10 (12673165-12674335) | |
| 42-1209, gnl|Hg17|chr8 (48667757-48666581) | |
| 42-1209, gnl|Mm7|chr5 (76165431-76164234) | |
| 2114-2220, gnl|bosTau2|chr5 (15554909-15555014) | |
| 2114-2220, gnl|canFam2|chr15 (36661379-36661708) | |
| 2114-2220, gnl|canFam2|chr15 (36661525-36661389) | |
| 2114-2220, gnl|dasNov1|scaffold_4455 (83811-83481) | |
| 2114-2220, gnl|dasNov1|scaffold_4455 (83668-83801) | |
| 2114-2220, gnl|echTel1|scaffold_234446 (338-679) | |
| 2114-2220, gnl|echTel1|scaffold_41920 (877-1010) | |
| 2114-2220, gnl|galGal2|chr1 (41653391-41653730) | |
| 2114-2220, gnl|hg17|chr10 (28982838-28982970) | |
| 2114-2220, gnl|hg17|chr12 (92304610-92304948) | |
| 2114-2220, gnl|Hg17|chr12 (92304722-92304617) | |
| 2114-2220, gnl|loxAfr1|scaffold_48540 (8985-9323) | |
| 2114-2220, gnl|loxAfr1|scaffold_48540 (9128-9006) | |
| 2114-2220, gnl|mm7|chr10 (95104934-95104648) | |
| 2114-2220, gnl|Mm7|chr10 (95104829-95104925) | |
| 2114-2220, gnl|monDom2|scaffold_34 (22961192-22960880) | |
| 2114-2220, gnl|oryCun1|scaffold_176102 (46869-47198) | |
| 2114-2220, gnl|oryCun1|scaffold_55968 (391-524) | |
| 2114-2220, gnl|panTro1|chr10 (94476402-94476741) | |
| 2114-2220, gnl|panTro1|chr10 (94476544-94476412) | |
| 2114-2220, gnl|rheMac2|chr11 (94635351-94635689) | |
| 2114-2220, gnl|rheMac2|chr9 (28745298-28745430) | |
| 2114-2220, gnl|rn3|chr7 (32771339-32771056) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 42-1209, gnl|bosTau2|chr10 (12673165-12674335) | |
| 42-1209, gnl|Hg17|chr8 (48667757-48666581) | |
| 42-1209, gnl|Mm7|chr5 (76165431-76164234) | |
| 2114-2220, gnl|bosTau2|chr5 (15554909-15555014) | |
| 2114-2220, gnl|canFam2|chr15 (36661379-36661708) | |
| 2114-2220, gnl|canFam2|chr15 (36661525-36661389) | |
| 2114-2220, gnl|dasNov1|scaffold_4455 (83811-83481) | |
| 2114-2220, gnl|dasNov1|scaffold_4455 (83668-83801) | |
| 2114-2220, gnl|echTel1|scaffold_234446 (338-679) | |
| 2114-2220, gnl|echTel1|scaffold_41920 (877-1010) | |
| 2114-2220, gnl|galGal2|chr1 (41653391-41653730) | |
| 2114-2220, gnl|hg17|chr10 (28982838-28982970) | |
| 2114-2220, gnl|hg17|chr12 (92304610-92304948) | |
| 2114-2220, gnl|Hg17|chr12 (92304722-92304617) | |
| 2114-2220, gnl|loxAfr1|scaffold_48540 (8985-9323) | |
| 2114-2220, gnl|loxAfr1|scaffold_48540 (9128-9006) | |
| 2114-2220, gnl|mm7|chr10 (95104934-95104648) | |
| 2114-2220, gnl|Mm7|chr10 (95104829-95104925) | |
| 2114-2220, gnl|monDom2|scaffold_34 (22961192-22960880) | |
| 2114-2220, gnl|oryCun1|scaffold_176102 (46869-47198) | |
| 2114-2220, gnl|oryCun1|scaffold_55968 (391-524) | |
| 2114-2220, gnl|panTro1|chr10 (94476402-94476741) | |
| 2114-2220, gnl|panTro1|chr10 (94476544-94476412) | |
| 2114-2220, gnl|rheMac2|chr11 (94635351-94635689) | |
| 2114-2220, gnl|rheMac2|chr9 (28745298-28745430) | |
| 2114-2220, gnl|rn3|chr7 (32771339-32771056) |
| Expressed library(ies): 46 entry(ies) | More info |
| Expressed library(ies): 46 entry(ies) | Help | Less info |
| cte (8.19672) | |
| tes (1.66251) | |
| cbr (1.0238) | |
| amn (0.835422) | |
| pro (0.512033) | |
| ret (0.3862) | |
| ill (0.351185) | |
| duo (0.345602) | |
| ecc (0.345105) | |
| spc (0.340097) | |
| cut (0.339847) | |
| cty (0.31224) | |
| eje (0.296501) | |
| ski (0.29347) | |
| ece (0.229305) | |
| nms (0.213858) | |
| hea (0.204499) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nje (0.16592) | |
| nco (0.161734) | |
| fco (0.157208) | |
| fat (0.147427) | |
| liv (0.146284) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| ova (0.129132) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eep (0.122564) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| cbl (0.114797) |
| Expressed library(ies): 46 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (8.19672) | |
| tes (1.66251) | |
| cbr (1.0238) | |
| amn (0.835422) | |
| pro (0.512033) | |
| ret (0.3862) | |
| ill (0.351185) | |
| duo (0.345602) | |
| ecc (0.345105) | |
| spc (0.340097) | |
| cut (0.339847) | |
| cty (0.31224) | |
| eje (0.296501) | |
| ski (0.29347) | |
| ece (0.229305) | |
| nms (0.213858) | |
| hea (0.204499) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nje (0.16592) | |
| nco (0.161734) | |
| fco (0.157208) | |
| fat (0.147427) | |
| liv (0.146284) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| ova (0.129132) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eep (0.122564) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| cbl (0.114797) |