Ss1.1-Pig4-TMW8055J11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCCCCGGACGTCTCCTGCTTCGTCGCTTCATTTTGTCTCGCCCAGCTCCGCCTTTTCC AGGTCCTCCTCTGTCTCTCAAGATGGCTGCGCTGCCGCCGAGCCCGGAACTGTGGAACCG CGTGAGGATCCCTAAAGCCGGCAGCCGCAGTACAGTAATCGTGCAGAACCCTGACACACC GCTGGACCTTTGCATTGCAGCTGTAATTAAAGAATGCTCTCTTGTTATACTGTCACTGAA GAGCCAAACCTTAGATGCAGAAACGGATGTGTTATGCGCATTCCTTTACAGCAATCACAA CAGAATGGGCCGCCACAAACCCCATTTGGCCCTCAAACAGGTTGAACAGTGTTTAAAACG CCTGAAAAACATGGATTTGGAAGGTTCAATTCAAGATCTCTCTGAGTTGTTTTCTTCTAA TGAAAATCAGCCTGTAAATTCCAAAGCTTGCGTCATCCCCAGCCAACCAGTGGTAGAAAT GGTGTTGATGAAGATTTTGGGAGGCTGCAAGTTGCTACTGCGCTTGTTGGACTGCTGCTG CAGGACATTTCTCTTGACTGTGAAACACCTAGGTTTGCAAGAATTCGTTATTTTAAACCT TGTGATGGTTGGGCTGGTGAGCAGATTATGGGTTCTTTATAAAGATGTTTTAAAAAGACT GATTTCTTTATATGAGCCATTGTTTGGATTACTTCAGGAGGTCTCCAAGATTCAACCATT GCCTTACTTCAAAGGTTTTACCTTTCCTTCTGATATTGCCGAATTTTTAGGACAGCCCTA TTTTGAAGTCTTTAAGAAAAAAATGCCTACAGTTTTTGCAGCTAAAGGAGTAACCAAATT GCTCAATAAACTGTTTTTAACAAAAGAGCAATCACAGAGGTCCAGTGAAGAAACTTTACT TAAAATTTCCAAAAAAGCTAAACAAATGAAGATCGACATACAGAATAATGTGGATCTTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCCCCGGACGTCTCCTGCTTCGTCGCTTCATTTTGTCTCGCCCAGCTCCGCCTTTTCC AGGTCCTCCTCTGTCTCTCAAGATGGCTGCGCTGCCGCCGAGCCCGGAACTGTGGAACCG CGTGAGGATCCCTAAAGCCGGCAGCCGCAGTACAGTAATCGTGCAGAACCCTGACACACC GCTGGACCTTTGCATTGCAGCTGTAATTAAAGAATGCTCTCTTGTTATACTGTCACTGAA GAGCCAAACCTTAGATGCAGAAACGGATGTGTTATGCGCATTCCTTTACAGCAATCACAA CAGAATGGGCCGCCACAAACCCCATTTGGCCCTCAAACAGGTTGAACAGTGTTTAAAACG CCTGAAAAACATGGATTTGGAAGGTTCAATTCAAGATCTCTCTGAGTTGTTTTCTTCTAA TGAAAATCAGCCTGTAAATTCCAAAGCTTGCGTCATCCCCAGCCAACCAGTGGTAGAAAT GGTGTTGATGAAGATTTTGGGAGGCTGCAAGTTGCTACTGCGCTTGTTGGACTGCTGCTG CAGGACATTTCTCTTGACTGTGAAACACCTAGGTTTGCAAGAATTCGTTATTTTAAACCT TGTGATGGTTGGGCTGGTGAGCAGATTATGGGTTCTTTATAAAGATGTTTTAAAAAGACT GATTTCTTTATATGAGCCATTGTTTGGATTACTTCAGGAGGTCTCCAAGATTCAACCATT GCCTTACTTCAAAGGTTTTACCTTTCCTTCTGATATTGCCGAATTTTTAGGACAGCCCTA TTTTGAAGTCTTTAAGAAAAAAATGCCTACAGTTTTTGCAGCTAAAGGAGTAACCAAATT GCTCAATAAACTGTTTTTAACAAAAGAGCAATCACAGAGGTCCAGTGAAGAAACTTTACT TAAAATTTCCAAAAAAGCTAAACAAATGAAGATCGACATACAGAATAATGTGGATCTTGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 13-183, gnl|bosTau2|chr1 (33421831-33422002) | |
| 13-183, gnl|canFam2|chr33 (20448311-20448570) | |
| 13-183, gnl|dasNov1|scaffold_55382 (2901-2664) | |
| 13-183, gnl|hg17|chr3 (114221053-114221292) | |
| 13-183, gnl|Hg17|chr3 (114221250-114221081) | |
| 13-183, gnl|mm7|chr16 (44502019-44501798) | |
| 13-183, gnl|Mm7|chr16 (44501816-44501992) | |
| 13-183, gnl|monDom2|scaffold_24 (7386352-7386600) | |
| 13-183, gnl|panTro1|chr2 (115942073-115942312) | |
| 13-183, gnl|rheMac2|chr2 (33059803-33060042) | |
| 13-183, gnl|rn3|chr11 (57566623-57566843) | |
| 185-342, gnl|bosTau2|chr1 (33426209-33426366) | |
| 185-342, gnl|canFam2|chr33 (20446143-20446514) | |
| 185-342, gnl|dasNov1|scaffold_55382 (4640-4276) | |
| 185-342, gnl|echTel1|scaffold_310138 (86734-87047) | |
| 185-342, gnl|hg17|chr3 (114218850-114219229) | |
| 185-342, gnl|Hg17|chr3 (114219140-114218983) | |
| 185-342, gnl|loxAfr1|scaffold_49167 (8614-8956) | |
| 185-342, gnl|mm7|chr16 (44504834-44504464) | |
| 185-342, gnl|Mm7|chr16 (44504553-44504710) | |
| 185-342, gnl|monDom2|scaffold_24 (7383334-7383719) | |
| 185-342, gnl|oryCun1|scaffold_211949 (312659-312328) | |
| 185-342, gnl|panTro1|chr2 (115939864-115940243) | |
| 185-342, gnl|rheMac2|chr2 (33057517-33057897) | |
| 185-342, gnl|rn3|chr11 (57563909-57564227) | |
| 410-571, gnl|bosTau2|chr1 (33429170-33429330) | |
| 410-571, gnl|Hg17|chr3 (114214951-114214792) | |
| 410-571, gnl|Mm7|chr16 (44507097-44507252) | |
| 630-960, gnl|bosTau2|chr1 (33431280-33431610) | |
| 630-960, gnl|canFam2|chr33 (20440614-20441031) | |
| 630-960, gnl|dasNov1|scaffold_55382 (7917-7500) | |
| 630-960, gnl|echTel1|scaffold_310138 (81108-81528) | |
| 630-960, gnl|hg17|chr3 (114212551-114212970) | |
| 630-960, gnl|Hg17|chr3 (114212944-114212614) | |
| 630-960, gnl|loxAfr1|scaffold_49167 (5086-5505) | |
| 630-960, gnl|mm7|chr16 (44509267-44508835) | |
| 630-960, gnl|Mm7|chr16 (44508857-44509187) | |
| 630-960, gnl|monDom2|scaffold_24 (7379031-7379437) | |
| 630-960, gnl|oryCun1|scaffold_211949 (318987-318567) | |
| 630-960, gnl|panTro1|chr2 (115933266-115933685) | |
| 630-960, gnl|rheMac2|chr2 (33050947-33051366) | |
| 630-960, gnl|rn3|chr11 (57559215-57559644) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-183, gnl|bosTau2|chr1 (33421831-33422002) | |
| 13-183, gnl|canFam2|chr33 (20448311-20448570) | |
| 13-183, gnl|dasNov1|scaffold_55382 (2901-2664) | |
| 13-183, gnl|hg17|chr3 (114221053-114221292) | |
| 13-183, gnl|Hg17|chr3 (114221250-114221081) | |
| 13-183, gnl|mm7|chr16 (44502019-44501798) | |
| 13-183, gnl|Mm7|chr16 (44501816-44501992) | |
| 13-183, gnl|monDom2|scaffold_24 (7386352-7386600) | |
| 13-183, gnl|panTro1|chr2 (115942073-115942312) | |
| 13-183, gnl|rheMac2|chr2 (33059803-33060042) | |
| 13-183, gnl|rn3|chr11 (57566623-57566843) | |
| 185-342, gnl|bosTau2|chr1 (33426209-33426366) | |
| 185-342, gnl|canFam2|chr33 (20446143-20446514) | |
| 185-342, gnl|dasNov1|scaffold_55382 (4640-4276) | |
| 185-342, gnl|echTel1|scaffold_310138 (86734-87047) | |
| 185-342, gnl|hg17|chr3 (114218850-114219229) | |
| 185-342, gnl|Hg17|chr3 (114219140-114218983) | |
| 185-342, gnl|loxAfr1|scaffold_49167 (8614-8956) | |
| 185-342, gnl|mm7|chr16 (44504834-44504464) | |
| 185-342, gnl|Mm7|chr16 (44504553-44504710) | |
| 185-342, gnl|monDom2|scaffold_24 (7383334-7383719) | |
| 185-342, gnl|oryCun1|scaffold_211949 (312659-312328) | |
| 185-342, gnl|panTro1|chr2 (115939864-115940243) | |
| 185-342, gnl|rheMac2|chr2 (33057517-33057897) | |
| 185-342, gnl|rn3|chr11 (57563909-57564227) | |
| 410-571, gnl|bosTau2|chr1 (33429170-33429330) | |
| 410-571, gnl|Hg17|chr3 (114214951-114214792) | |
| 410-571, gnl|Mm7|chr16 (44507097-44507252) | |
| 630-960, gnl|bosTau2|chr1 (33431280-33431610) | |
| 630-960, gnl|canFam2|chr33 (20440614-20441031) | |
| 630-960, gnl|dasNov1|scaffold_55382 (7917-7500) | |
| 630-960, gnl|echTel1|scaffold_310138 (81108-81528) | |
| 630-960, gnl|hg17|chr3 (114212551-114212970) | |
| 630-960, gnl|Hg17|chr3 (114212944-114212614) | |
| 630-960, gnl|loxAfr1|scaffold_49167 (5086-5505) | |
| 630-960, gnl|mm7|chr16 (44509267-44508835) | |
| 630-960, gnl|Mm7|chr16 (44508857-44509187) | |
| 630-960, gnl|monDom2|scaffold_24 (7379031-7379437) | |
| 630-960, gnl|oryCun1|scaffold_211949 (318987-318567) | |
| 630-960, gnl|panTro1|chr2 (115933266-115933685) | |
| 630-960, gnl|rheMac2|chr2 (33050947-33051366) | |
| 630-960, gnl|rn3|chr11 (57559215-57559644) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) |