Non-Coding RNA Search

Ss1.1-Pig4-TMW8055J16.3

Sequence:


               
               AAGAAGAAGACGCTCAACCCGGAATTTAATGAGGTAAGTGGGGCCAAGACCAGACACTGA
GGCGGCCTGGGGGTGGGGACCGCGCCTCACGGAAGGTGTGGCTTGCCCTGTCCCAGGAGT
TCTTCTACGAGATGGAGCTCTCCGCTCTGGCCACGAAGACTCTGGAAGTCACAGTCTGGG
ACTATGACATTGGCAAATCCAACGACTTCATCGGTGAGGGAGGAGCCTGCCGGGTGGGGC
TGATGGAGGGCAGACTGGCAGTGAGCTGGGGCCCTGATCCTGCCACCTCTACTGCTCCCC
AGGTGGCGTGTCCCTGGGGCCAGGCGCCCGGGGAGAGGCCCGGAAGCACTGGAGCGACTG
TCTGCGGCAGCCGGACGCAGCCCTGGAGCGCTGGCACACCCTGACCAGCGAGCTGCCCCC
GGCGGCCGGCGCCCTGCCCTCAGCCTGAGCAGGCTGGCTGCCTGGCACACGGCCCTTGAG
GGCCAGGGCCGGTACCCAACCCTCGCACGAATGTGTTGCACGTTTACACGGGGTGGCTGC
CCCACCCCACCCTACTTGTCTTATTTCGTGAGCGTCTCCGTGACCGTGGGTCTGTCTTCT
TGTGAGGGACTGTGGGGAGCTCTAGGCACATATGCAAACGTCACCCTGCCTGACTCGCTG
CGATGAGGACACGCAAATATGCAAACCGCCCACCCTGAGCACACCTGCAGCGGGGGTCCC
TGCGGTGCCCCTGGCTCAAGGCCTGGCTGCTGCTCCTCCCTCCTGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAAGAAGACGCTCAACCCGGAATTTAATGAGGTAAGTGGGGCCAAGACCAGACACTGA
GGCGGCCTGGGGGTGGGGACCGCGCCTCACGGAAGGTGTGGCTTGCCCTGTCCCAGGAGT
TCTTCTACGAGATGGAGCTCTCCGCTCTGGCCACGAAGACTCTGGAAGTCACAGTCTGGG
ACTATGACATTGGCAAATCCAACGACTTCATCGGTGAGGGAGGAGCCTGCCGGGTGGGGC
TGATGGAGGGCAGACTGGCAGTGAGCTGGGGCCCTGATCCTGCCACCTCTACTGCTCCCC
AGGTGGCGTGTCCCTGGGGCCAGGCGCCCGGGGAGAGGCCCGGAAGCACTGGAGCGACTG
TCTGCGGCAGCCGGACGCAGCCCTGGAGCGCTGGCACACCCTGACCAGCGAGCTGCCCCC
GGCGGCCGGCGCCCTGCCCTCAGCCTGAGCAGGCTGGCTGCCTGGCACACGGCCCTTGAG
GGCCAGGGCCGGTACCCAACCCTCGCACGAATGTGTTGCACGTTTACACGGGGTGGCTGC
CCCACCCCACCCTACTTGTCTTATTTCGTGAGCGTCTCCGTGACCGTGGGTCTGTCTTCT
TGTGAGGGACTGTGGGGAGCTCTAGGCACATATGCAAACGTCACCCTGCCTGACTCGCTG
CGATGAGGACACGCAAATATGCAAACCGCCCACCCTGAGCACACCTGCAGCGGGGGTCCC
TGCGGTGCCCCTGGCTCAAGGCCTGGCTGCTGCTCCTCCCTCCTGCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               114-231, - strand, RNAz p=0.515764

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               114-231, - strand, RNAz p=0.515764

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-768, gnl|bosTau2|chr25 (25355926-25355191)
               

               
               1-768, gnl|Hg17|chr16 (29925450-29924713)
               

               
               1-768, gnl|Mm7|chr7 (122948144-122948896)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-768, gnl|bosTau2|chr25 (25355926-25355191)
               

               
               1-768, gnl|Hg17|chr16 (29925450-29924713)
               

               
               1-768, gnl|Mm7|chr7 (122948144-122948896)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hlv (0.278513)
               

               
               csp (0.161186)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.278513)
               

               
               csp (0.161186)
               

               
               ebs (0.118301)

	1-768, gnl\|bosTau2\|chr25 (25355926-25355191)
	1-768, gnl\|Hg17\|chr16 (29925450-29924713)
	1-768, gnl\|Mm7\|chr7 (122948144-122948896)