Non-Coding RNA Search

Ss1.1-Pig4-TMW8055J19.5

Sequence:


               
               CACTGATGGGACCACTCATGTGATAGAAACTGGATTCTGCACTAACAGCAGCAGCGCAGA
CGAATTCCAGCCCTAACATCTGTGGCAGGAAGACAGGCAGCGGGTACGCGCCCCCAGAGC
CTGGGTGACAAGAGGATCTGGGGAGGAGGCCTCGGAAGCACTAGATTTGGGTGTTTCTGA
TGTCGCCTCTCCTCACTGTGCTGTTTCAGAGGAGGTGGGCCACAGGTGCTTGTGTAAATA
GGGATTCAAGAGTGAACACACAGAAGCAGGTGGTGTGTTAGGAACAGCCCGTTGCCCTTT
GAGCCCTTGCAGTTACCATGCCACCAAGAGAAGATTCAGGATTGTCGTAGTGCACGCTCT
TGGTAGGAGAAAGGGGACTTGGCTTTCGACGTGACCGTGCTGTGTGGCCCCAGGTGTATG
TAAGACCATGGCTGGGTCACAGCACATACATGGTAGGAAAGGTGACGCGTGAGCACACAC
TGTACCATTTCCTTTCAAACTGCCACTGAAGTTCAAGGCTGGGGTTGCTAAGGCATTGAC
CCGCCCCACCCCCAGCCGCACCCTCTGTCCAGTGGGCAGGTACGAAGTGGGGAGAAATGC
CAGGGTGTTGTATCAAGGACCTTGTTCCTCCCAAGGGCATAAACTTGGCTGGAATGCGTG
TCCTGTCAAAAGTGTGAGATGTCCTCTTTTGTTGTACCAAATAGGGCCCCCCCCACCCCC
CAAAGTGCTCTTCTGGAAGAGATTCCTGCCAGAAGCACTTGTATGAATGGAACGACCTAG
CCACGATTCGCACAGAGGAAATTGCACTGCTCAAGACAAGGAAACTTGATAAAAAGTCTG
CAGGTTTTTTGGGTTTTTTTCTCATCATGAAAATATACTAGAAAGAGCCTATGCTGTATT
CAGACAGAAGCCTCAAAATTCCTTTCAGTGGTTTACTTTAGAATGTTTACATACACGTTT
CACTTTGAAAAAAAGAAAAAAAGAAAATGCAAACTCTGACTTTTTAACAACTTCAGTGAT
TTTTCATGGCACAGTGGAACTCTGGCTCACCAACTGGATTTTAAATCTCACCTTAGAAAC
GTATTTATGAGTGTTTTCTCCCCTTCTCTCCACGTGGCTTTCCCTAAGATTCTGGTAAAG
GCGGTCCTGCCCGCCCGCACCCCTGTCTGTTTTCCCGGGTGGCTCTTGCTTCTTGCTTTG
CAGACAGCCTGCAGCCATGAGTTTGTCTCTGACATCTGTGAGCCAAAGACTGAGCCTTTT
TAGCAGAAATAATAAGCAATACTAGACAACTTGCTACTTTCAGAAAACTTTTGTTTTTTA
GCTTCACGGATGACAACAGAGGAAGAAGGGAACTGGGATTTGGGTAAGTTCTCCTCCGCT
GTTTGACCAAATTCTCAGTGATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTGATGGGACCACTCATGTGATAGAAACTGGATTCTGCACTAACAGCAGCAGCGCAGA
CGAATTCCAGCCCTAACATCTGTGGCAGGAAGACAGGCAGCGGGTACGCGCCCCCAGAGC
CTGGGTGACAAGAGGATCTGGGGAGGAGGCCTCGGAAGCACTAGATTTGGGTGTTTCTGA
TGTCGCCTCTCCTCACTGTGCTGTTTCAGAGGAGGTGGGCCACAGGTGCTTGTGTAAATA
GGGATTCAAGAGTGAACACACAGAAGCAGGTGGTGTGTTAGGAACAGCCCGTTGCCCTTT
GAGCCCTTGCAGTTACCATGCCACCAAGAGAAGATTCAGGATTGTCGTAGTGCACGCTCT
TGGTAGGAGAAAGGGGACTTGGCTTTCGACGTGACCGTGCTGTGTGGCCCCAGGTGTATG
TAAGACCATGGCTGGGTCACAGCACATACATGGTAGGAAAGGTGACGCGTGAGCACACAC
TGTACCATTTCCTTTCAAACTGCCACTGAAGTTCAAGGCTGGGGTTGCTAAGGCATTGAC
CCGCCCCACCCCCAGCCGCACCCTCTGTCCAGTGGGCAGGTACGAAGTGGGGAGAAATGC
CAGGGTGTTGTATCAAGGACCTTGTTCCTCCCAAGGGCATAAACTTGGCTGGAATGCGTG
TCCTGTCAAAAGTGTGAGATGTCCTCTTTTGTTGTACCAAATAGGGCCCCCCCCACCCCC
CAAAGTGCTCTTCTGGAAGAGATTCCTGCCAGAAGCACTTGTATGAATGGAACGACCTAG
CCACGATTCGCACAGAGGAAATTGCACTGCTCAAGACAAGGAAACTTGATAAAAAGTCTG
CAGGTTTTTTGGGTTTTTTTCTCATCATGAAAATATACTAGAAAGAGCCTATGCTGTATT
CAGACAGAAGCCTCAAAATTCCTTTCAGTGGTTTACTTTAGAATGTTTACATACACGTTT
CACTTTGAAAAAAAGAAAAAAAGAAAATGCAAACTCTGACTTTTTAACAACTTCAGTGAT
TTTTCATGGCACAGTGGAACTCTGGCTCACCAACTGGATTTTAAATCTCACCTTAGAAAC
GTATTTATGAGTGTTTTCTCCCCTTCTCTCCACGTGGCTTTCCCTAAGATTCTGGTAAAG
GCGGTCCTGCCCGCCCGCACCCCTGTCTGTTTTCCCGGGTGGCTCTTGCTTCTTGCTTTG
CAGACAGCCTGCAGCCATGAGTTTGTCTCTGACATCTGTGAGCCAAAGACTGAGCCTTTT
TAGCAGAAATAATAAGCAATACTAGACAACTTGCTACTTTCAGAAAACTTTTGTTTTTTA
GCTTCACGGATGACAACAGAGGAAGAAGGGAACTGGGATTTGGGTAAGTTCTCCTCCGCT
GTTTGACCAAATTCTCAGTGATAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1138-1257, - strand, RNAz p=0.665814

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1138-1257, - strand, RNAz p=0.665814

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1404, gnl|bosTau2|chr3 (22059173-22060543)
               

               
               1-1404, gnl|Hg17|chr1 (117243411-117244800)
               

               
               1-1404, gnl|Mm7|chr3 (100836505-100835271)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1404, gnl|bosTau2|chr3 (22059173-22060543)
               

               
               1-1404, gnl|Hg17|chr1 (117243411-117244800)
               

               
               1-1404, gnl|Mm7|chr3 (100836505-100835271)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               jca (0.22792)
               

               
               aor (0.195274)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.22792)
               

               
               aor (0.195274)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

	1-1404, gnl\|bosTau2\|chr3 (22059173-22060543)
	1-1404, gnl\|Hg17\|chr1 (117243411-117244800)
	1-1404, gnl\|Mm7\|chr3 (100836505-100835271)

	jca (0.22792)
	aor (0.195274)
	fhi (0.169578)
	cli (0.152812)
	hyp (0.142837)
	che (0.136314)
	nmm (0.132802)
	ova (0.129132)
	ese (0.126502)
	eep (0.122564)
	eru (0.120048)