Ss1.1-Pig4-TMW8055K02.3
|
CTGACTTGATCCGGAGAAGTTTCCTGAATTTCTGTGAAGGCCTGGTTTCCCCAGAGGAGT
GATTTCTGGTAGAGGTCTGAAGGTCTGATCCAAGGGAAAAAAATCCAGTATAGCCAATGA
ATTAAGGACAAGAAGGTTTCCAGTGACTCCCTGCTATGTGGATATTTGTTAGCAATGACT
GATGTGGAAACTACATATGCAGATTTTATTGCTTCAGGAAGAACAGGTAGAAGAAATGCA
ATACATGATATCCTGGTTTCCTCTGCAAGTGGCAACAGCAATGAATTAGCCTTGAAATTA
GCAGGTCTTGATATCAACAAGACAGAAGGTGAAGAGGATGCACAGCGAAATTCGACAGAA
CAAAGTGGGGAAGCCCAGGGAGAAGCAGCAAAATCAGAAAGCTAACACTCCACTTTGATC
TTTATCAACACCTGACAATGTCTCAAATCTCCGGGCCTGTCTGGAATGCATTTATTTCCG
AGAGTGAAAGGGGGAAAAAGAAAATGGCTGTTCTGCATTGCCGGAAACTGCTTGTTATGT
TAAAAATGGGGGCAGAGGCTGTGGCTGCAGACAGACTTTTCTCTACCTCTGGCATTAGCA
ATGGTTGAAATCATGTGGCTTGTGTTTGGATGTCATTTTTGGATGGATCCTTTCACTTGA
CCATATATATGACGAAATGCTTGTAGAGAGTAGCACTGACCTAGATGATGATTCTTCCTG
TAGCATCTGGCCCCTCACAATGTCAGAGGATTTAATTGTGTCTAATCGCAAAGGGTTGGT
TGAACCCCAGAGTTTTAAATATCTCTGGCCCAAGTATTCACCCAGTAAAAGAACCATCCA
GAAAGCACTGTTTTTAACATTATGTATCTGTGTGTTCCTGCTGTGTTATTTACACTGTTT
TGTATTGTACAATATAGATGCTCAGCACTGCCCCCTTCTTTGATTGCTTATGAAAAACAA
AAATGATGTCTTGTTACTGTGAATTTTTATACCACTCATTTTTAAAAGGGCTGCCTTTTT
TTCTGCTCCATAGTGTGGTGGTGTACACAGGATAAGATAGAACACACTTTTTTTTTTTTT
AAACATAATCTTTCCCCTTAATTCACTGCTGATGAATTAAGTCTAACAGATTCATCAAGA
CTCCTTTTGCTTATTGTACAGGCATTCGAAAATATCCATTAATGTGAATATTACCTGAAT
TCAGTCTGTTTGGTGTCTGCACAGACCAGAATTCAATCTGCAAATTTTGTCTTTTGCCCA
AGTGTAAAACTTTTTCCAATGAATATTTTTATTTTCAGTTATGAGGATTTGGGAGAATTG
GGGAGGTGGGAAAGAGAATCCAAGGTAATACCAAGCACTGGAAATACTTCCTTCTATGAA
ATCAAATTTCTCACAGTGCTGTATGATATTATTAAAATTTGGAGGACAACTTATCTCCAC
AGAGCTGCAAAAGATGGAGAAAATGACCTTGCAATCATGTGGACACCAATCACAAAAATA
AAGCCCTTGTGTTTTTCATGTCTTTTTTCAGCCCTATCAGATCCAAATGTTATTATGCAG
TTTTTAATGTTTGTAAACTTTTACTAATATAATTAGTGTGAATTGCATTCTGATACAATA
ATAATCATTATTAGAAGCTGACAAAAATCCTTATTAATACTGTTGATGGCCTCTGCTGTG
TTTTGACATCATGGTTCTTATATGGAAAGTTTCCTGTGTAATCCCTCCAGTCAGTATTAT
GAAATCATTTCTCAGTAGTAATAAAAAAGGCACCAGTAAAAAAAAAAAGCTCATGAATTA
CTGGATAAATACAAGGCAACAGGAAGACCCTTTACAATAAAAAGCCCACTTAACTATCCT
CGAGGTCTTAGATAGCGTCTCACGTGAAGTAGGTTAGGCAGCATTTCAGCAGATAATCAG
TATGGACAAACCAGGATCTCAGCCCTCCTTTGTAGTTACATAAGGGATGAAAGGTAAGTC
TGCCCTCATCTCCCTTTACAGTACATTTTGAATGAGATAAGGGCATGGGTATCACTTAAT
CCTCAATCATGTATTACTAGAAAAAATGTTAACTGTGTGACTCTTGGAGAAAATAGGAGG
AGGAAAGATAAAATTTTAGAGAACTTCCTTTTGTCTAACCCAATAGGGTCCAAAATGGCC
AGTTAAATTTCAGACCAATCCACCTATTAATAGACTCACAAATGGGAAAAGAGGTTCCTG
AGGCTATTTTAGACAATTTCTGGTAGTCCATTTAGGACATCCACTTACACATCCATACAA
TCACTTTTTCATATCCTCATTTATTATCCTCATAGCTTTCTTGTGCATCCAGGTAACATT
CTCTTCATCCTTAAATTTATAGAGTTCCAGACTGATTTCATGTGATTCTGTAAAGTTTAG
GACTAGTGCTGAGTATATGTGGAGGATTTATATTCCTATGTGATATATAATTATTAATGC
ATGTGGTATCATGCTTGTCTTTGAATATATAATAGTGCTAAATTGTGAAGTCATATGGAG
CTTTTGAATTATTTTGACCTCTTACTGCTACTTTGTCTGCTATATTCAAACCCAAAGGTA
TTACCAGGCCAGAAAATAAAAATCAACTCTCCAAAACATCCACATCCCATGAAAGTTGCT
CAGCAAAAGTTCAAAATAACTTCCAAATTCTGTCATATCTTTTACTTTGCAAGTCAATAA
TATACATGGGATTGAATTTTTAAGGAGAGAAAGAAATGCATTTGGTTTGATTATACACAT
TAAATGCCTATTAACTGACTTTTTGCTAATCACTTCAGCACACATATTCTTCCACTTAAT
CCTCAAACAATTCAATTAAAGAGGTAACATTATTCCATTTCAGGAATCAGGAAATTAAAG
CTCAATAAGGTATAACTTTTACAAGCTTAAAAAGCTAATAAGTGACGAAATAAAATTTGA
ACCTGTGTTTATCTGTCTCCAGGGAGCTTTCCACGGCACATGCTCTAAAATTGAAGCCAG
TTACAGAGCATGTATGTCTATAAGAGATGGACTGGATCAGCCTCCATATTTTAGAGAAGG
AAAGAGTAATTGTTGATCTCAAAGTTACCTAGATGAGTAATGACGCAGATGTGACTAGCA
CTTTTATTTAAAAAAAATAATAATAATAAATTTAATTAAAACTTATTTTTTGTGTTATAC
TTCCCAGAAGACATTTTTCTGACATGAAGTCTATAAACTTAGCATGGTTCAGATTTTTTA
CATTCCATGCTACTCATTTTGTTTAATTAACTAGAAATGTGATAATTTCAGTTTTTTGAC
TTACTTTTCAAATTTACCTTTAATCAATTGTAAGCATCCTGTGCTGATATTGAAATCATA
AATTCATAGAAATGTTTTTACAACAGATGACAAATGATTTTTAGGCAATATCCCCAGAGC
TGCACACTGTAAATACCCAACACTCAAGTCTTACTTACAGTGGAAATGTACTGTTTTAGA
AGATGAACAATATTGCTTCAGAGAAGCAATAAGGGGTTAAAAAAAAAAAATGTAACTGTG
GGCTGTAAAGTTTCTTGGTGAAGCCAGTAGTCGGGAGAATATGTAAAGTCATCAAGTGAA
AACAGGAAAGGAACTATGTTTATGATGTCTTAATAGGCCCTAAATTGTTCTTTCATTTAA
AAAGTGGCAGTCTCTGAAGTCATTTGTGAGCTTGTATGACTTTTGTATTTAGCAATGTTG
CATGCTCACATAATTGATATTAAAAGTAATACATTTTTCTGAAATGTA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTGACTTGATCCGGAGAAGTTTCCTGAATTTCTGTGAAGGCCTGGTTTCCCCAGAGGAGT
GATTTCTGGTAGAGGTCTGAAGGTCTGATCCAAGGGAAAAAAATCCAGTATAGCCAATGA
ATTAAGGACAAGAAGGTTTCCAGTGACTCCCTGCTATGTGGATATTTGTTAGCAATGACT
GATGTGGAAACTACATATGCAGATTTTATTGCTTCAGGAAGAACAGGTAGAAGAAATGCA
ATACATGATATCCTGGTTTCCTCTGCAAGTGGCAACAGCAATGAATTAGCCTTGAAATTA
GCAGGTCTTGATATCAACAAGACAGAAGGTGAAGAGGATGCACAGCGAAATTCGACAGAA
CAAAGTGGGGAAGCCCAGGGAGAAGCAGCAAAATCAGAAAGCTAACACTCCACTTTGATC
TTTATCAACACCTGACAATGTCTCAAATCTCCGGGCCTGTCTGGAATGCATTTATTTCCG
AGAGTGAAAGGGGGAAAAAGAAAATGGCTGTTCTGCATTGCCGGAAACTGCTTGTTATGT
TAAAAATGGGGGCAGAGGCTGTGGCTGCAGACAGACTTTTCTCTACCTCTGGCATTAGCA
ATGGTTGAAATCATGTGGCTTGTGTTTGGATGTCATTTTTGGATGGATCCTTTCACTTGA
CCATATATATGACGAAATGCTTGTAGAGAGTAGCACTGACCTAGATGATGATTCTTCCTG
TAGCATCTGGCCCCTCACAATGTCAGAGGATTTAATTGTGTCTAATCGCAAAGGGTTGGT
TGAACCCCAGAGTTTTAAATATCTCTGGCCCAAGTATTCACCCAGTAAAAGAACCATCCA
GAAAGCACTGTTTTTAACATTATGTATCTGTGTGTTCCTGCTGTGTTATTTACACTGTTT
TGTATTGTACAATATAGATGCTCAGCACTGCCCCCTTCTTTGATTGCTTATGAAAAACAA
AAATGATGTCTTGTTACTGTGAATTTTTATACCACTCATTTTTAAAAGGGCTGCCTTTTT
TTCTGCTCCATAGTGTGGTGGTGTACACAGGATAAGATAGAACACACTTTTTTTTTTTTT
AAACATAATCTTTCCCCTTAATTCACTGCTGATGAATTAAGTCTAACAGATTCATCAAGA
CTCCTTTTGCTTATTGTACAGGCATTCGAAAATATCCATTAATGTGAATATTACCTGAAT
TCAGTCTGTTTGGTGTCTGCACAGACCAGAATTCAATCTGCAAATTTTGTCTTTTGCCCA
AGTGTAAAACTTTTTCCAATGAATATTTTTATTTTCAGTTATGAGGATTTGGGAGAATTG
GGGAGGTGGGAAAGAGAATCCAAGGTAATACCAAGCACTGGAAATACTTCCTTCTATGAA
ATCAAATTTCTCACAGTGCTGTATGATATTATTAAAATTTGGAGGACAACTTATCTCCAC
AGAGCTGCAAAAGATGGAGAAAATGACCTTGCAATCATGTGGACACCAATCACAAAAATA
AAGCCCTTGTGTTTTTCATGTCTTTTTTCAGCCCTATCAGATCCAAATGTTATTATGCAG
TTTTTAATGTTTGTAAACTTTTACTAATATAATTAGTGTGAATTGCATTCTGATACAATA
ATAATCATTATTAGAAGCTGACAAAAATCCTTATTAATACTGTTGATGGCCTCTGCTGTG
TTTTGACATCATGGTTCTTATATGGAAAGTTTCCTGTGTAATCCCTCCAGTCAGTATTAT
GAAATCATTTCTCAGTAGTAATAAAAAAGGCACCAGTAAAAAAAAAAAGCTCATGAATTA
CTGGATAAATACAAGGCAACAGGAAGACCCTTTACAATAAAAAGCCCACTTAACTATCCT
CGAGGTCTTAGATAGCGTCTCACGTGAAGTAGGTTAGGCAGCATTTCAGCAGATAATCAG
TATGGACAAACCAGGATCTCAGCCCTCCTTTGTAGTTACATAAGGGATGAAAGGTAAGTC
TGCCCTCATCTCCCTTTACAGTACATTTTGAATGAGATAAGGGCATGGGTATCACTTAAT
CCTCAATCATGTATTACTAGAAAAAATGTTAACTGTGTGACTCTTGGAGAAAATAGGAGG
AGGAAAGATAAAATTTTAGAGAACTTCCTTTTGTCTAACCCAATAGGGTCCAAAATGGCC
AGTTAAATTTCAGACCAATCCACCTATTAATAGACTCACAAATGGGAAAAGAGGTTCCTG
AGGCTATTTTAGACAATTTCTGGTAGTCCATTTAGGACATCCACTTACACATCCATACAA
TCACTTTTTCATATCCTCATTTATTATCCTCATAGCTTTCTTGTGCATCCAGGTAACATT
CTCTTCATCCTTAAATTTATAGAGTTCCAGACTGATTTCATGTGATTCTGTAAAGTTTAG
GACTAGTGCTGAGTATATGTGGAGGATTTATATTCCTATGTGATATATAATTATTAATGC
ATGTGGTATCATGCTTGTCTTTGAATATATAATAGTGCTAAATTGTGAAGTCATATGGAG
CTTTTGAATTATTTTGACCTCTTACTGCTACTTTGTCTGCTATATTCAAACCCAAAGGTA
TTACCAGGCCAGAAAATAAAAATCAACTCTCCAAAACATCCACATCCCATGAAAGTTGCT
CAGCAAAAGTTCAAAATAACTTCCAAATTCTGTCATATCTTTTACTTTGCAAGTCAATAA
TATACATGGGATTGAATTTTTAAGGAGAGAAAGAAATGCATTTGGTTTGATTATACACAT
TAAATGCCTATTAACTGACTTTTTGCTAATCACTTCAGCACACATATTCTTCCACTTAAT
CCTCAAACAATTCAATTAAAGAGGTAACATTATTCCATTTCAGGAATCAGGAAATTAAAG
CTCAATAAGGTATAACTTTTACAAGCTTAAAAAGCTAATAAGTGACGAAATAAAATTTGA
ACCTGTGTTTATCTGTCTCCAGGGAGCTTTCCACGGCACATGCTCTAAAATTGAAGCCAG
TTACAGAGCATGTATGTCTATAAGAGATGGACTGGATCAGCCTCCATATTTTAGAGAAGG
AAAGAGTAATTGTTGATCTCAAAGTTACCTAGATGAGTAATGACGCAGATGTGACTAGCA
CTTTTATTTAAAAAAAATAATAATAATAAATTTAATTAAAACTTATTTTTTGTGTTATAC
TTCCCAGAAGACATTTTTCTGACATGAAGTCTATAAACTTAGCATGGTTCAGATTTTTTA
CATTCCATGCTACTCATTTTGTTTAATTAACTAGAAATGTGATAATTTCAGTTTTTTGAC
TTACTTTTCAAATTTACCTTTAATCAATTGTAAGCATCCTGTGCTGATATTGAAATCATA
AATTCATAGAAATGTTTTTACAACAGATGACAAATGATTTTTAGGCAATATCCCCAGAGC
TGCACACTGTAAATACCCAACACTCAAGTCTTACTTACAGTGGAAATGTACTGTTTTAGA
AGATGAACAATATTGCTTCAGAGAAGCAATAAGGGGTTAAAAAAAAAAAATGTAACTGTG
GGCTGTAAAGTTTCTTGGTGAAGCCAGTAGTCGGGAGAATATGTAAAGTCATCAAGTGAA
AACAGGAAAGGAACTATGTTTATGATGTCTTAATAGGCCCTAAATTGTTCTTTCATTTAA
AAAGTGGCAGTCTCTGAAGTCATTTGTGAGCTTGTATGACTTTTGTATTTAGCAATGTTG
CATGCTCACATAATTGATATTAAAAGTAATACATTTTTCTGAAATGTA
|
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gi|47523492|ref|NP_999369.1| |
Protein identifier
|
gi|47523492|ref|NP_999369.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
18-142, gnl|bosTau2|chr14 (23150787-23150663) |
|
18-142, gnl|canFam2|chr29 (29245949-29246071) |
|
18-142, gnl|dasNov1|scaffold_14886 (19567-19441) |
|
18-142, gnl|echTel1|scaffold_254827 (3464-3590) |
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18-142, gnl|hg17|chr8 (79647600-79647730) |
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18-142, gnl|Hg17|chr8 (79647599-79647724) |
|
18-142, gnl|loxAfr1|scaffold_10475 (31496-31628) |
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18-142, gnl|mm7|chr3 (7414574-7414690) |
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18-142, gnl|Mm7|chr3 (7414573-7414684) |
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18-142, gnl|oryCun1|scaffold_212726 (162706-162574) |
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18-142, gnl|panTro1|chr7 (81766047-81766177) |
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18-142, gnl|rheMac2|chr8 (81027114-81027244) |
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18-142, gnl|rn3|chr2 (96500388-96500273) |
| |
|
322-2731, gnl|bosTau2|chr15 (34458855-34456467) |
|
322-2731, gnl|Hg17|chr8 (79676528-79678931) |
|
322-2731, gnl|Mm7|chr3 (7449868-7452173) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
18-142, gnl|bosTau2|chr14 (23150787-23150663) |
|
18-142, gnl|canFam2|chr29 (29245949-29246071) |
|
18-142, gnl|dasNov1|scaffold_14886 (19567-19441) |
|
18-142, gnl|echTel1|scaffold_254827 (3464-3590) |
|
18-142, gnl|hg17|chr8 (79647600-79647730) |
|
18-142, gnl|Hg17|chr8 (79647599-79647724) |
|
18-142, gnl|loxAfr1|scaffold_10475 (31496-31628) |
|
18-142, gnl|mm7|chr3 (7414574-7414690) |
|
18-142, gnl|Mm7|chr3 (7414573-7414684) |
|
18-142, gnl|oryCun1|scaffold_212726 (162706-162574) |
|
18-142, gnl|panTro1|chr7 (81766047-81766177) |
|
18-142, gnl|rheMac2|chr8 (81027114-81027244) |
|
18-142, gnl|rn3|chr2 (96500388-96500273) |
| |
|
322-2731, gnl|bosTau2|chr15 (34458855-34456467) |
|
322-2731, gnl|Hg17|chr8 (79676528-79678931) |
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322-2731, gnl|Mm7|chr3 (7449868-7452173) |
|
bfe (3.29687) |
|
tbr (3.23774) |
|
vin (2.99302) |
|
isp (2.70677) |
|
ste (1.89292) |
|
ldo (1.26103) |
|
sme (1.22175) |
|
nms (0.855432) |
|
mas (0.84122) |
|
fco (0.628832) |
|
liv (0.585137) |
|
ssp (0.542079) |
|
ton (0.526501) |
|
kid (0.518941) |
|
ebs (0.473205) |
|
hea (0.408998) |
|
fcc (0.39557) |
|
aor (0.390549) |
|
ese (0.379507) |
|
ecc (0.345105) |
|
ece (0.229305) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
spl (0.143184) |
|
hlv (0.139256) |
|
che (0.136314) |
|
ret (0.128733) |
|
cbr (0.127975) |
|
sug (0.127291) |
|
eru (0.120048) |
|
eje (0.0988338) |
|
bfe (3.29687) |
|
tbr (3.23774) |
|
vin (2.99302) |
|
isp (2.70677) |
|
ste (1.89292) |
|
ldo (1.26103) |
|
sme (1.22175) |
|
nms (0.855432) |
|
mas (0.84122) |
|
fco (0.628832) |
|
liv (0.585137) |
|
ssp (0.542079) |
|
ton (0.526501) |
|
kid (0.518941) |
|
ebs (0.473205) |
|
hea (0.408998) |
|
fcc (0.39557) |
|
aor (0.390549) |
|
ese (0.379507) |
|
ecc (0.345105) |
|
ece (0.229305) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
spl (0.143184) |
|
hlv (0.139256) |
|
che (0.136314) |
|
ret (0.128733) |
|
cbr (0.127975) |
|
sug (0.127291) |
|
eru (0.120048) |
|
eje (0.0988338) |
