Non-Coding RNA Search

Ss1.1-Pig4-TMW8055K16.5

Sequence:


               
               AAATCGAATCAGTGTACCATTCTTCCAGGCGCGATGCAGCATCAGCAGCTCAACGTCAAG
GGGACCTTCCTCCCTTCCTATTAATTACCTGCTCTTTCGCATCTCGGGGTTCCTACCTTT
GCAAAGTGCTCCTGGGAGGAGGGAAGAAACGACCATCACCCTGCCAGCCCCCTTGCTGCC
TGGGGCTTCAGGCTTTACTAGATGGCTAACAGGGGCCCGAGCTACGGCTTAAGCCGAGAG
GTGCAGGAGAAGATTGAGCAGAAGTATGACGCAGACCTGGAGAACAAACTGGTGGACTGG
ATCATCCTGCAGTGCGCGGAGGACATAGAGCACCCACCCCCCGGCAGGACCCATTTTCAG
AAATGGTTAATGGACGGGACGGTCTTGTGTAAGCTGATAAACAGTTTATACCCTCCTGGA
CAAGAACCCATTCCCAAGATCTCAGAGTCAAAGATGGCTTTTAAGCAGATGGAACAAATC
TCCCAGTTCCTAAAAGCTGCAGAGATCTATGGTGTCAGGACCACTGACATTTTTCAGACT
GTGGATCTGTGGGAAGGGAAGGACATGGCGGCCGTGCAGAGGACCCTGATGGCTCTGGGC
AGCGTTGCAGTCACCAAGGATGATGGCTGCTACCGGGGAGAGCCATCTTGGTTTCACAGG
AAAGCCCAGCAGAATCGGAGAGGATTTTCAGAGGAGCAGCTTCGCCAGGGACAGAACGTC
ATCGGCCTGCAGATGGGCAGCAACAAGGGAGCCTCCCAGGCAGGCATGACTGGGTACGGG
ATGCCCAGGCAGATCATGTGAGACCCTGCCTCCCACCCCCCGTAGAGAGGATGAATGATC
CACACCACGGTCTATATGGTAAAGAAATAGTTAGTCACCTCTGACCTTCTCTTCTCAAAG
CCTCCTGTCCTTGGTTTTTGCAAGTGCCGCATTTCTGCTGCGAATCCACGTTGCCTACTG
CTGCCACCTTCTGTTCATTTAGAACTATGCAAAGACTCCGCTTCCTCCCTCTTCCTGAGC
TCCTTTGCCCTAAAAGCCTTTATCAGTCTGATTATTTATTTATTTATTTATTTGCCAAAA
ATTCTCCCTCCTCAACTTACAGAACGCACCTAATAAACAAATTAGTCTTGTGAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATCGAATCAGTGTACCATTCTTCCAGGCGCGATGCAGCATCAGCAGCTCAACGTCAAG
GGGACCTTCCTCCCTTCCTATTAATTACCTGCTCTTTCGCATCTCGGGGTTCCTACCTTT
GCAAAGTGCTCCTGGGAGGAGGGAAGAAACGACCATCACCCTGCCAGCCCCCTTGCTGCC
TGGGGCTTCAGGCTTTACTAGATGGCTAACAGGGGCCCGAGCTACGGCTTAAGCCGAGAG
GTGCAGGAGAAGATTGAGCAGAAGTATGACGCAGACCTGGAGAACAAACTGGTGGACTGG
ATCATCCTGCAGTGCGCGGAGGACATAGAGCACCCACCCCCCGGCAGGACCCATTTTCAG
AAATGGTTAATGGACGGGACGGTCTTGTGTAAGCTGATAAACAGTTTATACCCTCCTGGA
CAAGAACCCATTCCCAAGATCTCAGAGTCAAAGATGGCTTTTAAGCAGATGGAACAAATC
TCCCAGTTCCTAAAAGCTGCAGAGATCTATGGTGTCAGGACCACTGACATTTTTCAGACT
GTGGATCTGTGGGAAGGGAAGGACATGGCGGCCGTGCAGAGGACCCTGATGGCTCTGGGC
AGCGTTGCAGTCACCAAGGATGATGGCTGCTACCGGGGAGAGCCATCTTGGTTTCACAGG
AAAGCCCAGCAGAATCGGAGAGGATTTTCAGAGGAGCAGCTTCGCCAGGGACAGAACGTC
ATCGGCCTGCAGATGGGCAGCAACAAGGGAGCCTCCCAGGCAGGCATGACTGGGTACGGG
ATGCCCAGGCAGATCATGTGAGACCCTGCCTCCCACCCCCCGTAGAGAGGATGAATGATC
CACACCACGGTCTATATGGTAAAGAAATAGTTAGTCACCTCTGACCTTCTCTTCTCAAAG
CCTCCTGTCCTTGGTTTTTGCAAGTGCCGCATTTCTGCTGCGAATCCACGTTGCCTACTG
CTGCCACCTTCTGTTCATTTAGAACTATGCAAAGACTCCGCTTCCTCCCTCTTCCTGAGC
TCCTTTGCCCTAAAAGCCTTTATCAGTCTGATTATTTATTTATTTATTTATTTGCCAAAA
ATTCTCCCTCCTCAACTTACAGAACGCACCTAATAAACAAATTAGTCTTGTGAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|18252579|gb|AAL66341.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|18252579|gb|AAL66341.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-195, gnl|bosTau2|chr1 (32458317-32458508)
               

               
               1-195, gnl|Hg17|chr3 (113200454-113200647)
               

               
               1-195, gnl|Mm7|chr16 (45502330-45502154)
               


               
               202-801, gnl|bosTau2|chr11 (84892302-84892901)
               

               
               202-801, gnl|Hg17|chr8 (107779417-107778828)
               

               
               202-801, gnl|Mm7|chr1 (172475321-172476881)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-195, gnl|bosTau2|chr1 (32458317-32458508)
               

               
               1-195, gnl|Hg17|chr3 (113200454-113200647)
               

               
               1-195, gnl|Mm7|chr16 (45502330-45502154)
               


               
               202-801, gnl|bosTau2|chr11 (84892302-84892901)
               

               
               202-801, gnl|Hg17|chr8 (107779417-107778828)
               

               
               202-801, gnl|Mm7|chr1 (172475321-172476881)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               fcc (0.988924)
               

               
               ecc (0.690211)
               

               
               fhi (0.508733)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.988924)
               

               
               ecc (0.690211)
               

               
               fhi (0.508733)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)

	1-195, gnl\|bosTau2\|chr1 (32458317-32458508)
	1-195, gnl\|Hg17\|chr3 (113200454-113200647)
	1-195, gnl\|Mm7\|chr16 (45502330-45502154)

	202-801, gnl\|bosTau2\|chr11 (84892302-84892901)
	202-801, gnl\|Hg17\|chr8 (107779417-107778828)
	202-801, gnl\|Mm7\|chr1 (172475321-172476881)

	fcc (0.988924)
	ecc (0.690211)
	fhi (0.508733)
	hyp (0.285673)
	fce (0.271592)
	ebs (0.236602)
	ece (0.229305)
	fbs (0.175346)
	lnt (0.142308)
	ese (0.126502)