Ss1.1-Pig4-TMW8055K17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGCCCCCCTGGCAAGAACGGAGATGATGGTGAAGCTGGAAAGCCTGGTCGCCCTGGTG AGCGTGGGCCTCCTGGACCTCAGGGTGCTCGGGGATTGCCCGGAACAGCTGGCCTCCCTG GAATGAAGGGACACAGAGGTTTCAGTGGTTTGGATGGTGCCAAGGGAGATGCTGGTCCTG CTGGTCCCAAGGGTGAGCCTGGTAGCCCTGGTGAAAATGGAGCTCCTGGTCAGATGGGCC CCCGTGGTCTGCCTGGTGAGCGAGGTCGCCCTGGACCCCCTGGCCCTGCTGGTGCTCGTG GAAATGATGGTGCTACTGGTGCTGCTGGACCCCCTGGTCCCACTGGCCCCGCTGGTCCTC CTGGCTTCCCTGGTGCTGTTGGTGCTAAGGGTGAAGCTGGTCCCCAAGGAGCCCGAGGCT CTGAAGGTCCCCAGGGTGTGCGTGGTGAGCCTGGCCCCCCTGGCCCTGCTGGTGCTGCTG GCCCTGCTGGAAACCCTGGTGCTGATGGACAGCCTGGTGGCAAAGGTGCCAACGGCGCTC CTGGTATTGCTGGTGCTCCTGGCTTCCCTGGTGCCCGAGGCCCCTCTGGACCCCAGGGTC CCAGCGGCCCCCCTGGTCCCAAGGGTAACAGCGGTGAACCTGGTGCTCCCGGCAGCAAAG GAGACACTGGCGCCAAGGGAGAGCCCGGTCCCACTGGTGTTCAAGGCCCCCCTGGCCCTG CTGGAGAAGAAGGAAAGCGAGGAGCCCGAGGTGAACCTGGACCTGCTGGCCTGCCTGGAC CCCCTGGCGAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGCCCCCCTGGCAAGAACGGAGATGATGGTGAAGCTGGAAAGCCTGGTCGCCCTGGTG AGCGTGGGCCTCCTGGACCTCAGGGTGCTCGGGGATTGCCCGGAACAGCTGGCCTCCCTG GAATGAAGGGACACAGAGGTTTCAGTGGTTTGGATGGTGCCAAGGGAGATGCTGGTCCTG CTGGTCCCAAGGGTGAGCCTGGTAGCCCTGGTGAAAATGGAGCTCCTGGTCAGATGGGCC CCCGTGGTCTGCCTGGTGAGCGAGGTCGCCCTGGACCCCCTGGCCCTGCTGGTGCTCGTG GAAATGATGGTGCTACTGGTGCTGCTGGACCCCCTGGTCCCACTGGCCCCGCTGGTCCTC CTGGCTTCCCTGGTGCTGTTGGTGCTAAGGGTGAAGCTGGTCCCCAAGGAGCCCGAGGCT CTGAAGGTCCCCAGGGTGTGCGTGGTGAGCCTGGCCCCCCTGGCCCTGCTGGTGCTGCTG GCCCTGCTGGAAACCCTGGTGCTGATGGACAGCCTGGTGGCAAAGGTGCCAACGGCGCTC CTGGTATTGCTGGTGCTCCTGGCTTCCCTGGTGCCCGAGGCCCCTCTGGACCCCAGGGTC CCAGCGGCCCCCCTGGTCCCAAGGGTAACAGCGGTGAACCTGGTGCTCCCGGCAGCAAAG GAGACACTGGCGCCAAGGGAGAGCCCGGTCCCACTGGTGTTCAAGGCCCCCCTGGCCCTG CTGGAGAAGAAGGAAAGCGAGGAGCCCGAGGTGAACCTGGACCTGCTGGCCTGCCTGGAC CCCCTGGCGAGC |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 388-492, gnl|bosTau2|chr19 (29178515-29178619) | |
| 388-492, gnl|canFam2|chr9 (29517924-29518168) | |
| 388-492, gnl|danRer3|chr3 (16133751-16133501) | |
| 388-492, gnl|dasNov1|scaffold_47748 (7368-7609) | |
| 388-492, gnl|echTel1|scaffold_304076 (4832-4592) | |
| 388-492, gnl|fr1|chrUn (49854479-49854729) | |
| 388-492, gnl|hg17|chr17 (45627787-45628031) | |
| 388-492, gnl|Hg17|chr17 (45628027-45627923) | |
| 388-492, gnl|loxAfr1|scaffold_26320 (18927-18683) | |
| 388-492, gnl|mm7|chr11 (95051294-95051051) | |
| 388-492, gnl|Mm7|chr11 (95051053-95051157) | |
| 388-492, gnl|monDom2|scaffold_18 (43173317-43173073) | |
| 388-492, gnl|oryCun1|scaffold_186257 (12304-12548) | |
| 388-492, gnl|panTro1|chr19_random (31246336-31246580) | |
| 388-492, gnl|rheMac2|chr16 (34434248-34434492) | |
| 388-492, gnl|rn3|chr10 (83643147-83642904) | |
| 388-492, gnl|tetNig1|chr2 (688336-688591) | |
| 388-492, gnl|xenTro1|scaffold_316 (975911-976157) | |
| 687-792, gnl|bosTau2|chr19 (29179289-29179394) | |
| 687-792, gnl|canFam2|chr9 (29517309-29517465) | |
| 687-792, gnl|danRer3|chr3 (16134983-16134831) | |
| 687-792, gnl|dasNov1|scaffold_47748 (6830-6985) | |
| 687-792, gnl|echTel1|scaffold_304076 (5433-5285) | |
| 687-792, gnl|fr1|chrUn (49853945-49854090) | |
| 687-792, gnl|galGal2|chrUn (134205445-134205279) | |
| 687-792, gnl|hg17|chr17 (45627071-45627226) | |
| 687-792, gnl|Hg17|chr17 (45627188-45627083) | |
| 687-792, gnl|loxAfr1|scaffold_26320 (19613-19463) | |
| 687-792, gnl|mm7|chr11 (95051953-95051802) | |
| 687-792, gnl|Mm7|chr11 (95051834-95051939) | |
| 687-792, gnl|monDom2|scaffold_18 (43174731-43174589) | |
| 687-792, gnl|oryCun1|scaffold_186257 (11720-11874) | |
| 687-792, gnl|panTro1|chr19_random (31245620-31245775) | |
| 687-792, gnl|rheMac2|chr16 (34433551-34433706) | |
| 687-792, gnl|rn3|chr10 (83643812-83643666) | |
| 687-792, gnl|tetNig1|chr2 (687806-687935) | |
| 687-792, gnl|xenTro1|scaffold_316 (974596-974737) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 388-492, gnl|bosTau2|chr19 (29178515-29178619) | |
| 388-492, gnl|canFam2|chr9 (29517924-29518168) | |
| 388-492, gnl|danRer3|chr3 (16133751-16133501) | |
| 388-492, gnl|dasNov1|scaffold_47748 (7368-7609) | |
| 388-492, gnl|echTel1|scaffold_304076 (4832-4592) | |
| 388-492, gnl|fr1|chrUn (49854479-49854729) | |
| 388-492, gnl|hg17|chr17 (45627787-45628031) | |
| 388-492, gnl|Hg17|chr17 (45628027-45627923) | |
| 388-492, gnl|loxAfr1|scaffold_26320 (18927-18683) | |
| 388-492, gnl|mm7|chr11 (95051294-95051051) | |
| 388-492, gnl|Mm7|chr11 (95051053-95051157) | |
| 388-492, gnl|monDom2|scaffold_18 (43173317-43173073) | |
| 388-492, gnl|oryCun1|scaffold_186257 (12304-12548) | |
| 388-492, gnl|panTro1|chr19_random (31246336-31246580) | |
| 388-492, gnl|rheMac2|chr16 (34434248-34434492) | |
| 388-492, gnl|rn3|chr10 (83643147-83642904) | |
| 388-492, gnl|tetNig1|chr2 (688336-688591) | |
| 388-492, gnl|xenTro1|scaffold_316 (975911-976157) | |
| 687-792, gnl|bosTau2|chr19 (29179289-29179394) | |
| 687-792, gnl|canFam2|chr9 (29517309-29517465) | |
| 687-792, gnl|danRer3|chr3 (16134983-16134831) | |
| 687-792, gnl|dasNov1|scaffold_47748 (6830-6985) | |
| 687-792, gnl|echTel1|scaffold_304076 (5433-5285) | |
| 687-792, gnl|fr1|chrUn (49853945-49854090) | |
| 687-792, gnl|galGal2|chrUn (134205445-134205279) | |
| 687-792, gnl|hg17|chr17 (45627071-45627226) | |
| 687-792, gnl|Hg17|chr17 (45627188-45627083) | |
| 687-792, gnl|loxAfr1|scaffold_26320 (19613-19463) | |
| 687-792, gnl|mm7|chr11 (95051953-95051802) | |
| 687-792, gnl|Mm7|chr11 (95051834-95051939) | |
| 687-792, gnl|monDom2|scaffold_18 (43174731-43174589) | |
| 687-792, gnl|oryCun1|scaffold_186257 (11720-11874) | |
| 687-792, gnl|panTro1|chr19_random (31245620-31245775) | |
| 687-792, gnl|rheMac2|chr16 (34433551-34433706) | |
| 687-792, gnl|rn3|chr10 (83643812-83643666) | |
| 687-792, gnl|tetNig1|chr2 (687806-687935) | |
| 687-792, gnl|xenTro1|scaffold_316 (974596-974737) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.61282) |