Non-Coding RNA Search

Ss1.1-Pig4-TMW8055K22.3

Sequence:


               
               ACTTTGGGATCTGGTGGTTTTCCATCTTGCCCATTTTATTAAAAAGATCAAGGCATTTTA
CAATAGGACAATTAATTTAACATACGGCAATTAAAACCAGTCAAAACTATTTAGAAATAA
GGAGAGACAGACGTATCAGGATTACTTAATTACAGGAATGAAAAAATAAACCTAGCTCTA
CAGTTTCTGGCCACCAAGGCCCTAAAGCAGGGTTTCACGGTCTGAAGATGGAAACACACC
AGGGTCCCTGGTGATGTCAGGGCGCTGCTGGCCCCGAATTCCACGGCGTGCGCTCTCACC
GATTGGAAGGCTGGTATCCGGGTCTTTTCAAATCTTATTCATATGCCTAAAAGTCAAAGG
ACAGTTCCCACGGAAGCAAGCACAGGAAATCCTTACTAGTCAAATGGAAAGCCGCATCTT
TGGAAGCTCCGAGTGCCCCCAAGTGCTGGAGGCCTCGGAGGCCTGAGGAGAACGAGGAAG
AAATGCCGCGGTCCCAGCGCACATGCCGGCCGCTGTGCGCGTCCACGGCTTGCTCCAAGC
AGGGAAGGGGCCCGGCTCTGCCTTCCTGCCAGTCCTCCGAGCGCCCTTACTGCAGGGAGA
GCAGAGGGAAGCCTTCCGCCCCGTCCGAGGGCTCCACATCCGCAGTACCGGAATGCCAGG
TGCGGCCGGGGTGGGGCTCCCGAGAGAGACACTTAAACTGTGATCTGCTGGTTTTCTCGG
AAGAGGGGTCTCTGGTATGAAGCGCAGATATCGGGAAACATCCGGAAGACCTGGTCTGGC
TGGGCCTCCTCCGGCACCTGCATCATGGAGCCGGCGCTGCAGCTCCTGCCGGCTTCTTCC
ACCAGCTGCCGGACGTAGAGCTGCTCCACCTGCACGAGGATGAGCTTGGAGCGCAGGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTGGGATCTGGTGGTTTTCCATCTTGCCCATTTTATTAAAAAGATCAAGGCATTTTA
CAATAGGACAATTAATTTAACATACGGCAATTAAAACCAGTCAAAACTATTTAGAAATAA
GGAGAGACAGACGTATCAGGATTACTTAATTACAGGAATGAAAAAATAAACCTAGCTCTA
CAGTTTCTGGCCACCAAGGCCCTAAAGCAGGGTTTCACGGTCTGAAGATGGAAACACACC
AGGGTCCCTGGTGATGTCAGGGCGCTGCTGGCCCCGAATTCCACGGCGTGCGCTCTCACC
GATTGGAAGGCTGGTATCCGGGTCTTTTCAAATCTTATTCATATGCCTAAAAGTCAAAGG
ACAGTTCCCACGGAAGCAAGCACAGGAAATCCTTACTAGTCAAATGGAAAGCCGCATCTT
TGGAAGCTCCGAGTGCCCCCAAGTGCTGGAGGCCTCGGAGGCCTGAGGAGAACGAGGAAG
AAATGCCGCGGTCCCAGCGCACATGCCGGCCGCTGTGCGCGTCCACGGCTTGCTCCAAGC
AGGGAAGGGGCCCGGCTCTGCCTTCCTGCCAGTCCTCCGAGCGCCCTTACTGCAGGGAGA
GCAGAGGGAAGCCTTCCGCCCCGTCCGAGGGCTCCACATCCGCAGTACCGGAATGCCAGG
TGCGGCCGGGGTGGGGCTCCCGAGAGAGACACTTAAACTGTGATCTGCTGGTTTTCTCGG
AAGAGGGGTCTCTGGTATGAAGCGCAGATATCGGGAAACATCCGGAAGACCTGGTCTGGC
TGGGCCTCCTCCGGCACCTGCATCATGGAGCCGGCGCTGCAGCTCCTGCCGGCTTCTTCC
ACCAGCTGCCGGACGTAGAGCTGCTCCACCTGCACGAGGATGAGCTTGGAGCGCAGGGGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6T5D3_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6T5D3_PIG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               544-872, gnl|bosTau2|chr18 (8963093-8962751)
               

               
               544-872, gnl|Hg17|chr16 (84512571-84512210)
               

               
               544-872, gnl|Mm7|chr8 (119390295-119389970)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               544-872, gnl|bosTau2|chr18 (8963093-8962751)
               

               
               544-872, gnl|Hg17|chr16 (84512571-84512210)
               

               
               544-872, gnl|Mm7|chr8 (119390295-119389970)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               ill (0.526778)
               

               
               cly (0.361925)
               

               
               cje (0.330469)
               

               
               csp (0.322373)
               

               
               cte (0.29274)
               

               
               ton (0.1755)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.526778)
               

               
               cly (0.361925)
               

               
               cje (0.330469)
               

               
               csp (0.322373)
               

               
               cte (0.29274)
               

               
               ton (0.1755)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	544-872, gnl\|bosTau2\|chr18 (8963093-8962751)
	544-872, gnl\|Hg17\|chr16 (84512571-84512210)
	544-872, gnl\|Mm7\|chr8 (119390295-119389970)

	ill (0.526778)
	cly (0.361925)
	cje (0.330469)
	csp (0.322373)
	cte (0.29274)
	ton (0.1755)
	cag (0.151194)
	lun (0.150489)
	lnt (0.142308)
	csk (0.140746)
	cst (0.140036)
	che (0.136314)
	ebs (0.118301)
	jca (0.11396)
	jej (0.0989218)