Non-Coding RNA Search

Ss1.1-Pig4-TMW8055L04.5

Sequence:


               
               AGTTGGCGCCACTGGGTCCTCCAGGACTCTGTGTCGGTGAAGACTGAGTAGCAGATATTT
TCTAGGAAAGAACCACTTTATAGCTCTTCTCCACACGAATTGCAAACAGCCGCCAGCGCA
AAGCCGCCACGCAAGCTCACTGCCGTCAATACTTCCGGGCGCCAGGACGCGGTACTGAGG
GACGCGAAGGCCTTTGCCAGAAATGGCAAGTCTTTTAACGACTTCACCTGTTCCTATAAG
GACAAAATTTCTACATCAAATAGGATTGTCACTTTATAATACCTCTCATGGCTTCCATGA
GGAAGAAGTGAAAAAAAAACTTCAGCAGTTTCCTGGTGGATCTGTTGACCTCCAGAAAGA
AGAAAATGGCCTTGGCATTCTTACTCTGAACAATCCAAGTAAAATGAATGCCTTCTCAGG
TGTTATGATGCTGCAGCTTCTGGAAAAAGTGATTGAGTTGGAAAATTGGACAGAGGGGAA
AGGTGTCATTGTCTGTGGGGCAAAAAATACTTTCTCCTCAGGATCTGATCTGAATGCTGT
GAAAGCACTAGGAACTCCAGAGGATGGAATGGCTGTATGCATGTTCATGCAAAACACCTT
AACAAGATTTATGAGACTTCCTTTAATAAGTGTTGCACTGGTTCAAGGTCGGGCACTGGG
TGGAGGAGCAGAATTTACTACAGCATGTGATTTCAGATTAATGACTACCGAGAGTGAAAT
CAGATTTGTCCACAGGGAGATGGGCATAATACCAAGCTGGGGCGGTGCTGCACGACTGGT
TGAAATAATCGGCAGTAGACAAGCTCTTAAAGTGTTAAGCGGGGCCCTCAGACTTGATTC
AGAAAAAGCTTTACACATAGGAATTGCTGACGAGGTCTTGCAATCTTCAGATGAAACTGA
GTGTCTCAGAGAGGCACGAGAGTGGCTACAGCAGTTTATCAAAGGGCCACCAGAAGTAAT
TAGAGCTCTGAAAAAATCCATTTCTTCAGGCAGAGAGCTTTGTTTAGAGGAGGCATTGCA
GATGGAAAGAGATCTTTTAGGTACAGTTTGGGGTGGACCTGCCAATTTAGAGGCTGTTGC
TAGGAGAGGAAAGTTTAAGAAATAGTTTAAAAAAAAAATGTACTCTAAGTAAAACTCCAA
TGATTAATACGTATAGAAGTTAACATTAAATGTGAATGTCACAACTACTTTGAAGGCTAC
TATTAGTATTTGGGTTTGTTTTTAACAACTGTATTAATGTCTGAGCTCACTGGCCTAATT
TTCAGTATATTTGGGCACTTACCAAGTAATGTGAAACATCTAGCTAAACTATAAAACACT
TTTGGCTTAAAAATGATCAATTCCCAAATTCCCGTAATAGTTCTTAAGCTATAACCAAAG
ACCAGTTTTTAAAAGGAAAAACTACACAAAACTTATTCCTGGTGTTATTTTTAATAAAGT
CTTTGTCTTGTCTTACCTGGAAATACTTTACAAAAATAACTTCATGACACTTAGAAAACA
AAAGTGGAGATGGTTCAGGGGATAAGCAAGTATGCAAAGATCTGATCTTCTGCTCTAAGC
AGCTGGAGTAGAAAAGTCATGGGGGATTCTCTTGTGGCATGGCAGTGAAAGACCCAGTGT
TGTCCCTGGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTGGCGCCACTGGGTCCTCCAGGACTCTGTGTCGGTGAAGACTGAGTAGCAGATATTT
TCTAGGAAAGAACCACTTTATAGCTCTTCTCCACACGAATTGCAAACAGCCGCCAGCGCA
AAGCCGCCACGCAAGCTCACTGCCGTCAATACTTCCGGGCGCCAGGACGCGGTACTGAGG
GACGCGAAGGCCTTTGCCAGAAATGGCAAGTCTTTTAACGACTTCACCTGTTCCTATAAG
GACAAAATTTCTACATCAAATAGGATTGTCACTTTATAATACCTCTCATGGCTTCCATGA
GGAAGAAGTGAAAAAAAAACTTCAGCAGTTTCCTGGTGGATCTGTTGACCTCCAGAAAGA
AGAAAATGGCCTTGGCATTCTTACTCTGAACAATCCAAGTAAAATGAATGCCTTCTCAGG
TGTTATGATGCTGCAGCTTCTGGAAAAAGTGATTGAGTTGGAAAATTGGACAGAGGGGAA
AGGTGTCATTGTCTGTGGGGCAAAAAATACTTTCTCCTCAGGATCTGATCTGAATGCTGT
GAAAGCACTAGGAACTCCAGAGGATGGAATGGCTGTATGCATGTTCATGCAAAACACCTT
AACAAGATTTATGAGACTTCCTTTAATAAGTGTTGCACTGGTTCAAGGTCGGGCACTGGG
TGGAGGAGCAGAATTTACTACAGCATGTGATTTCAGATTAATGACTACCGAGAGTGAAAT
CAGATTTGTCCACAGGGAGATGGGCATAATACCAAGCTGGGGCGGTGCTGCACGACTGGT
TGAAATAATCGGCAGTAGACAAGCTCTTAAAGTGTTAAGCGGGGCCCTCAGACTTGATTC
AGAAAAAGCTTTACACATAGGAATTGCTGACGAGGTCTTGCAATCTTCAGATGAAACTGA
GTGTCTCAGAGAGGCACGAGAGTGGCTACAGCAGTTTATCAAAGGGCCACCAGAAGTAAT
TAGAGCTCTGAAAAAATCCATTTCTTCAGGCAGAGAGCTTTGTTTAGAGGAGGCATTGCA
GATGGAAAGAGATCTTTTAGGTACAGTTTGGGGTGGACCTGCCAATTTAGAGGCTGTTGC
TAGGAGAGGAAAGTTTAAGAAATAGTTTAAAAAAAAAATGTACTCTAAGTAAAACTCCAA
TGATTAATACGTATAGAAGTTAACATTAAATGTGAATGTCACAACTACTTTGAAGGCTAC
TATTAGTATTTGGGTTTGTTTTTAACAACTGTATTAATGTCTGAGCTCACTGGCCTAATT
TTCAGTATATTTGGGCACTTACCAAGTAATGTGAAACATCTAGCTAAACTATAAAACACT
TTTGGCTTAAAAATGATCAATTCCCAAATTCCCGTAATAGTTCTTAAGCTATAACCAAAG
ACCAGTTTTTAAAAGGAAAAACTACACAAAACTTATTCCTGGTGTTATTTTTAATAAAGT
CTTTGTCTTGTCTTACCTGGAAATACTTTACAAAAATAACTTCATGACACTTAGAAAACA
AAAGTGGAGATGGTTCAGGGGATAAGCAAGTATGCAAAGATCTGATCTTCTGCTCTAAGC
AGCTGGAGTAGAAAAGTCATGGGGGATTCTCTTGTGGCATGGCAGTGAAAGACCCAGTGT
TGTCCCTGGAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61553065|gb|AAX46345.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61553065|gb|AAX46345.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               304-421, no strand, RNAz p=0.888322

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               304-421, no strand, RNAz p=0.888322

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               193-421, gnl|bosTau2|chr9 (10565622-10565850)
               

               
               193-421, gnl|Hg17|chr6 (127693876-127693645)
               

               
               193-421, gnl|Mm7|chr10 (29098177-29098402)
               


               
               691-1115, gnl|bosTau2|chr9 (10595894-10596318)
               

               
               691-1115, gnl|Hg17|chr6 (127653121-127652705)
               

               
               691-1115, gnl|Mm7|chr10 (29125013-29125436)
               


               
               1130-1546, gnl|bosTau2|chr9 (10596555-10596974)
               

               
               1130-1546, gnl|Hg17|chr6 (127652678-127652255)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               193-421, gnl|bosTau2|chr9 (10565622-10565850)
               

               
               193-421, gnl|Hg17|chr6 (127693876-127693645)
               

               
               193-421, gnl|Mm7|chr10 (29098177-29098402)
               


               
               691-1115, gnl|bosTau2|chr9 (10595894-10596318)
               

               
               691-1115, gnl|Hg17|chr6 (127653121-127652705)
               

               
               691-1115, gnl|Mm7|chr10 (29125013-29125436)
               


               
               1130-1546, gnl|bosTau2|chr9 (10596555-10596974)
               

               
               1130-1546, gnl|Hg17|chr6 (127652678-127652255)

Expressed library(ies): 37 entry(ies)

More info

Expressed library(ies): 37 entry(ies)

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               ski (1.02715)
               

               
               fat (0.58971)
               

               
               sug (0.509165)
               

               
               mgp (0.461361)
               

               
               lin (0.436808)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               mga (0.32041)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 37 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (1.02715)
               

               
               fat (0.58971)
               

               
               sug (0.509165)
               

               
               mgp (0.461361)
               

               
               lin (0.436808)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               mga (0.32041)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	193-421, gnl\|bosTau2\|chr9 (10565622-10565850)
	193-421, gnl\|Hg17\|chr6 (127693876-127693645)
	193-421, gnl\|Mm7\|chr10 (29098177-29098402)

	691-1115, gnl\|bosTau2\|chr9 (10595894-10596318)
	691-1115, gnl\|Hg17\|chr6 (127653121-127652705)
	691-1115, gnl\|Mm7\|chr10 (29125013-29125436)

	1130-1546, gnl\|bosTau2\|chr9 (10596555-10596974)
	1130-1546, gnl\|Hg17\|chr6 (127652678-127652255)

	ski (1.02715)
	fat (0.58971)
	sug (0.509165)
	mgp (0.461361)
	lin (0.436808)
	aor (0.390549)
	ret (0.3862)
	sag (0.36543)
	mgm (0.360685)
	mga (0.32041)
	fce (0.271592)
	kid (0.259471)
	thg (0.253582)
	tra (0.246184)
	fli (0.202881)
	jej (0.197844)
	sto (0.179824)
	rec (0.17307)
	fhi (0.169578)
	cki (0.165235)
	nco (0.161734)
	tbr (0.154178)
	lun (0.150489)
	isp (0.150376)
	spl (0.143184)
	hyp (0.142837)
	cst (0.140036)
	che (0.136314)
	pla (0.133672)
	lyg (0.133103)
	nmm (0.132802)
	ese (0.126502)
	bla (0.124347)
	med (0.116252)
	ecc (0.115035)
	spc (0.113366)
	cty (0.10408)