Non-Coding RNA Search

Ss1.1-Pig4-TMW8055L06.5

Sequence:


               
               CGGTGCAGCCGCGGCTGCCATCTTAGCAACTCCTGGCGTTGCGGCCTTGTCGTTTCAAGC
GGCCTTCGTGGCGGCCGTTGACCTCAGGGAGCGGCACGAAGTCATCTGGGTAACAGCTGC
CCTCTCCCCGGTCTCCACAGGACGACCAGCCCGAGTCCGGAGGCGAAGGCGAGGGTAGCC
GGGCACGTGCGGGGCCCGAAACCAGCGGTTGGTCACAGCGTCTCCCGGAAGGATGGGCCG
GTCTCGGAGCCGCAGCTCGTCCCGCTCCAAACACACCAAGAGCAGCAAACACAACAAGAA
GCGGAGCCGGTCGCGGTCGCGGTCTCGGGACAAGGAGCGCGTGCGGAAGCGCTCCAAATC
CCGGGAAAGTAAACGGAACCGGCGGCGGGAGTCGCGCTCGCGCTCGCGCTCCACCAACAC
GGCCGTGTCCCGGCGCGAGCGGGACCGGGAGCGCGCGTCGTCCCCGCCCGACCGCATCGA
CATCTTCGGGCGCACGGTGAGCAAGCGCAGCAGCCTGGACGAGAAGCAGAAGCGGGAGGA
GGAGGAGAAGAAAGCGGAGTTCGAGCGGCAGCGAAAAATTCGGCAGCAAGAAATAGAAGA
AAAACTCATCGAGGAAGAAACAGCACGAAGAGTAGAAGAATTGGTGGCAAAAAGGGTAGA
GGAAGAATTGGAGAAAAGGAAGGATGAAATTGAGCGAGAAGTTCTCCGAAGGGTGGAGGA
AGCCAAGCGCATCATGGAAAAGCAGTTGCTCGAAGAACTCGAGCGACAGAGACAAGCTGA
GCTTGCAGCACAAAAAGCCAGAGAGGTAACGCTCGGTCGTTTGGAAAGTAGAGACAGTCC
ATGGCAAAACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTGCAGCCGCGGCTGCCATCTTAGCAACTCCTGGCGTTGCGGCCTTGTCGTTTCAAGC
GGCCTTCGTGGCGGCCGTTGACCTCAGGGAGCGGCACGAAGTCATCTGGGTAACAGCTGC
CCTCTCCCCGGTCTCCACAGGACGACCAGCCCGAGTCCGGAGGCGAAGGCGAGGGTAGCC
GGGCACGTGCGGGGCCCGAAACCAGCGGTTGGTCACAGCGTCTCCCGGAAGGATGGGCCG
GTCTCGGAGCCGCAGCTCGTCCCGCTCCAAACACACCAAGAGCAGCAAACACAACAAGAA
GCGGAGCCGGTCGCGGTCGCGGTCTCGGGACAAGGAGCGCGTGCGGAAGCGCTCCAAATC
CCGGGAAAGTAAACGGAACCGGCGGCGGGAGTCGCGCTCGCGCTCGCGCTCCACCAACAC
GGCCGTGTCCCGGCGCGAGCGGGACCGGGAGCGCGCGTCGTCCCCGCCCGACCGCATCGA
CATCTTCGGGCGCACGGTGAGCAAGCGCAGCAGCCTGGACGAGAAGCAGAAGCGGGAGGA
GGAGGAGAAGAAAGCGGAGTTCGAGCGGCAGCGAAAAATTCGGCAGCAAGAAATAGAAGA
AAAACTCATCGAGGAAGAAACAGCACGAAGAGTAGAAGAATTGGTGGCAAAAAGGGTAGA
GGAAGAATTGGAGAAAAGGAAGGATGAAATTGAGCGAGAAGTTCTCCGAAGGGTGGAGGA
AGCCAAGCGCATCATGGAAAAGCAGTTGCTCGAAGAACTCGAGCGACAGAGACAAGCTGA
GCTTGCAGCACAAAAAGCCAGAGAGGTAACGCTCGGTCGTTTGGAAAGTAGAGACAGTCC
ATGGCAAAACTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q80XJ0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q80XJ0_MOUSE

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               319-438, - strand, RNAz p=0.938454
               

               
               660-852, - strand, RNAz p=0.929181

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               319-438, - strand, RNAz p=0.938454
               

               
               660-852, - strand, RNAz p=0.929181

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               276-408, - strand, RNAmicro p=0.999656
               

               
               303-413, + strand, RNAmicro p=0.998414

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               276-408, - strand, RNAmicro p=0.999656
               

               
               303-413, + strand, RNAmicro p=0.998414

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-579, gnl|bosTau2|chr12 (45279042-45278462)
               

               
               1-579, gnl|Hg17|chr13 (106018496-106017922)
               

               
               1-579, gnl|Mm7|chr8 (8660400-8659862)
               


               
               580-852, gnl|bosTau2|chr12 (45270011-45269739)
               

               
               580-852, gnl|Hg17|chr13 (106010006-106009734)
               

               
               580-852, gnl|Mm7|chr8 (8653858-8653586)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-579, gnl|bosTau2|chr12 (45279042-45278462)
               

               
               1-579, gnl|Hg17|chr13 (106018496-106017922)
               

               
               1-579, gnl|Mm7|chr8 (8660400-8659862)
               


               
               580-852, gnl|bosTau2|chr12 (45270011-45269739)
               

               
               580-852, gnl|Hg17|chr13 (106010006-106009734)
               

               
               580-852, gnl|Mm7|chr8 (8653858-8653586)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               mas (0.210305)
               

               
               mcp (0.170648)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               mcp (0.170648)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	319-438, - strand, RNAz p=0.938454
	660-852, - strand, RNAz p=0.929181

	276-408, - strand, RNAmicro p=0.999656
	303-413, + strand, RNAmicro p=0.998414

	1-579, gnl\|bosTau2\|chr12 (45279042-45278462)
	1-579, gnl\|Hg17\|chr13 (106018496-106017922)
	1-579, gnl\|Mm7\|chr8 (8660400-8659862)

	580-852, gnl\|bosTau2\|chr12 (45270011-45269739)
	580-852, gnl\|Hg17\|chr13 (106010006-106009734)
	580-852, gnl\|Mm7\|chr8 (8653858-8653586)

	mas (0.210305)
	mcp (0.170648)
	liv (0.146284)
	csk (0.140746)
	hlv (0.139256)
	pla (0.133672)
	lyg (0.133103)
	med (0.116252)
	cty (0.10408)