Non-Coding RNA Search

Ss1.1-Pig4-TMW8055L10.3

Sequence:


               
               TTAGGTTTTGGCCTTTAGTCTGAAAAAGTGTTGATTGAAAGTGTACAACAGAGAGCGGGT
GCAAGCGGCTGGGGGCCATGGAGCCGCCAATAAAAAAAGAATGTCCTTAAATAAAGTTCA
CAGAGTAAAAACCAGAACCACCAGTCCTTCCCTCCAACACAACGAGCACAGGCAGAGAAC
CGGCGATGAGCCCCAAGGAGCAAGGACGAGGCTGGGGAGGACAGCAGAGGCTCCCAGGCT
GCTGTGTGGAGGGAGAGCCCTCTTTGGAATGGGCTGAGCAGAGCCACCCAGCTCCCCCTG
CACACCTCATAACCACCACTGCTAAGGCTAAAGGAAAAAGACAAAACTCAGTCTCAGTCC
GGAGGGCTCAGAAAACAGTCTAGGTGGGCAGGGGTCTGGACAACTGCTAGTCCCGCTTGG
CCTTCTTCTTGTTGTCACTGTTGCCATTTTCTTCAGCCCCCTCAGTAGAGAGCACCTCCT
CCAGTTTCCGCTTGCCACTCTCTGGCTGAAGCTCTGCTGTGTTTCGGGGCTTGAAGCATA
TGATGATGCAGGTCATGTTGTCACACCCTGTACCGTCCCCAGAGGTGTCTGGTGCCAGGC
ACTGATCCAGCAGCTCTTCCACGATGGATGACAATAACCGAAGCTCCCCATTTTCATCAC
GCTGGCTGATCTTGGACTGAATAAAGTCTATAACTTCCTGGCTGCTCATCACATTCCAGA
TGCCATCACAGGCAATGACCATGAATTCGTGATCATCAGTGAGAGTCAGCACCTTGATGT
CAGGGAGGGCCGAAATCATCTGTTCCTCAGGTGGTAAGTTCTTGTTTCTCTTATAGAAGT
GGTCTCCAATGGCTCTGGAGAGGTTGAGGCCACCGTTGACTCGCCCGTCCATGGTGACCT
TGCCACCAGCATTCTTGATGCGTGCCAGCTCCACTTCATCCTCTGGTTTGTGGTCATAGG
ACATGTCTAAAGCTTTGCCAGCCTCAGACACCACACAGCGGGAGTCTCCTGCATTGGCTA
CAATCAACTGCTTCCCTCGTATCAGAGCCACCACCGCTGTTGTGCCACTGTCAGAGCCAG
GCTCCTCTTTGCCTTCCATCCCAGGGACCATCATCTCCTCTTCTTCTTCCTCATCCTCTT
CAGCCTCCTCAGTGTCATCCTCGTCTTCCTCATTCTCTGCCTCTTCACTGCTGTAGCCGT
CTTCTTCCTCACTGCATTCCTCACTGTCTTCCTCTTCCTCCTCCGCCTCATCTGACTCAT
CCTCACTGTCCTCAAAGAACTTGGACTTAGCAACTCGAGGCAGCTTGTCAGAGGCTGAAG
AGCAGGAAGGCCCAGCCTCACCAGTGGGAGTGCCAGGCTCACCCCCTTGGCCTGCCTCAG
TCCCACGTTCCGAGTTGGAGGAAAGGCCTGTGTGAGCCTTGGCTGTGGGGCCATTTTCCT
CTGAAGAAGTTTCCCTAGATGGGTCCTCAGGTCCCGCCTCCCCATTGAGGCCCTGGGACC
CTGCTTCCTCGCCTGTCCCAGCTCCAGATTTGCTGTGGGGAGCACCCTTGTGACAGTTCT
GCCCATAGCGTGTCAGCAGCTCTTCAATAGTCATGGTAGCCTCTTCATGCAGTAGTGCAG
CCTCCTCGTTGTCCACATCATCTTCATCAGCTACTTTTTCTTTTTCATCCTCATCCTCAG
TGGGTCGCCCTGCAATCTGTGCCAGCTCTTTAATGACTTCCTCAGTGGTCAGTTTGGCAT
CGATAGCCAAGAAGGCATCTTCCAAAGCCTTCTGTAGCTTGCCTTCTTTGTAGGCCTTCT
GATCCTTGATGATGTCAGGAAGATATTTGGCACAGTACAAGGCAACTTCCTCCCCTCCAT
GTCCATCGTAGACAGAAAACATGGCTGTCTCGCTGTCCAGCTCAGGAATACAGTTGTGAG
CATCCTCCATGGAGACGCGCCAGCCTTGCATGGCGGAGAAGCCGTAGGGCAGCGGCAGGC
GCGAGGCGCCGACCCCGTCCCCAGAGCACTTCACCGTGTTGGGCTGGGAGAGGTAGGCAC
CCATGGCGGCGGCTGACCGGCGACCTCAGGGGAAGGCGAGTGGGGCGCGACCCGTGCCGG
AGCCGGAGCCCCGGGGGCGCGCGTGGCAGGAGCGGGCTAGACTGCGCGGCCGACGCAAGG
TGCCGGTGAAAGGCGCGAGGCGGGCCAGGAGGCGGTAACGGGACGGGAGCAGAGAGGGAG
CGGAAACGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGGTTTTGGCCTTTAGTCTGAAAAAGTGTTGATTGAAAGTGTACAACAGAGAGCGGGT
GCAAGCGGCTGGGGGCCATGGAGCCGCCAATAAAAAAAGAATGTCCTTAAATAAAGTTCA
CAGAGTAAAAACCAGAACCACCAGTCCTTCCCTCCAACACAACGAGCACAGGCAGAGAAC
CGGCGATGAGCCCCAAGGAGCAAGGACGAGGCTGGGGAGGACAGCAGAGGCTCCCAGGCT
GCTGTGTGGAGGGAGAGCCCTCTTTGGAATGGGCTGAGCAGAGCCACCCAGCTCCCCCTG
CACACCTCATAACCACCACTGCTAAGGCTAAAGGAAAAAGACAAAACTCAGTCTCAGTCC
GGAGGGCTCAGAAAACAGTCTAGGTGGGCAGGGGTCTGGACAACTGCTAGTCCCGCTTGG
CCTTCTTCTTGTTGTCACTGTTGCCATTTTCTTCAGCCCCCTCAGTAGAGAGCACCTCCT
CCAGTTTCCGCTTGCCACTCTCTGGCTGAAGCTCTGCTGTGTTTCGGGGCTTGAAGCATA
TGATGATGCAGGTCATGTTGTCACACCCTGTACCGTCCCCAGAGGTGTCTGGTGCCAGGC
ACTGATCCAGCAGCTCTTCCACGATGGATGACAATAACCGAAGCTCCCCATTTTCATCAC
GCTGGCTGATCTTGGACTGAATAAAGTCTATAACTTCCTGGCTGCTCATCACATTCCAGA
TGCCATCACAGGCAATGACCATGAATTCGTGATCATCAGTGAGAGTCAGCACCTTGATGT
CAGGGAGGGCCGAAATCATCTGTTCCTCAGGTGGTAAGTTCTTGTTTCTCTTATAGAAGT
GGTCTCCAATGGCTCTGGAGAGGTTGAGGCCACCGTTGACTCGCCCGTCCATGGTGACCT
TGCCACCAGCATTCTTGATGCGTGCCAGCTCCACTTCATCCTCTGGTTTGTGGTCATAGG
ACATGTCTAAAGCTTTGCCAGCCTCAGACACCACACAGCGGGAGTCTCCTGCATTGGCTA
CAATCAACTGCTTCCCTCGTATCAGAGCCACCACCGCTGTTGTGCCACTGTCAGAGCCAG
GCTCCTCTTTGCCTTCCATCCCAGGGACCATCATCTCCTCTTCTTCTTCCTCATCCTCTT
CAGCCTCCTCAGTGTCATCCTCGTCTTCCTCATTCTCTGCCTCTTCACTGCTGTAGCCGT
CTTCTTCCTCACTGCATTCCTCACTGTCTTCCTCTTCCTCCTCCGCCTCATCTGACTCAT
CCTCACTGTCCTCAAAGAACTTGGACTTAGCAACTCGAGGCAGCTTGTCAGAGGCTGAAG
AGCAGGAAGGCCCAGCCTCACCAGTGGGAGTGCCAGGCTCACCCCCTTGGCCTGCCTCAG
TCCCACGTTCCGAGTTGGAGGAAAGGCCTGTGTGAGCCTTGGCTGTGGGGCCATTTTCCT
CTGAAGAAGTTTCCCTAGATGGGTCCTCAGGTCCCGCCTCCCCATTGAGGCCCTGGGACC
CTGCTTCCTCGCCTGTCCCAGCTCCAGATTTGCTGTGGGGAGCACCCTTGTGACAGTTCT
GCCCATAGCGTGTCAGCAGCTCTTCAATAGTCATGGTAGCCTCTTCATGCAGTAGTGCAG
CCTCCTCGTTGTCCACATCATCTTCATCAGCTACTTTTTCTTTTTCATCCTCATCCTCAG
TGGGTCGCCCTGCAATCTGTGCCAGCTCTTTAATGACTTCCTCAGTGGTCAGTTTGGCAT
CGATAGCCAAGAAGGCATCTTCCAAAGCCTTCTGTAGCTTGCCTTCTTTGTAGGCCTTCT
GATCCTTGATGATGTCAGGAAGATATTTGGCACAGTACAAGGCAACTTCCTCCCCTCCAT
GTCCATCGTAGACAGAAAACATGGCTGTCTCGCTGTCCAGCTCAGGAATACAGTTGTGAG
CATCCTCCATGGAGACGCGCCAGCCTTGCATGGCGGAGAAGCCGTAGGGCAGCGGCAGGC
GCGAGGCGCCGACCCCGTCCCCAGAGCACTTCACCGTGTTGGGCTGGGAGAGGTAGGCAC
CCATGGCGGCGGCTGACCGGCGACCTCAGGGGAAGGCGAGTGGGGCGCGACCCGTGCCGG
AGCCGGAGCCCCGGGGGCGCGCGTGGCAGGAGCGGGCTAGACTGCGCGGCCGACGCAAGG
TGCCGGTGAAAGGCGCGAGGCGGGCCAGGAGGCGGTAACGGGACGGGAGCAGAGAGGGAG
CGGAAACGGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6IAU5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6IAU5_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               189-302, - strand, RNAz p=0.748572
               

               
               422-541, - strand, RNAz p=0.939172
               

               
               716-834, + strand, RNAz p=0.921761

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               189-302, - strand, RNAz p=0.748572
               

               
               422-541, - strand, RNAz p=0.939172
               

               
               716-834, + strand, RNAz p=0.921761

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of BC000057, -
               

               
               5' of BC000057, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC000057, -
               

               
               5' of BC000057, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-615, gnl|bosTau2|chr11 (51971667-51971064)
               

               
               1-615, gnl|Hg17|chr2 (27515717-27516325)
               

               
               1-615, gnl|Mm7|chr5 (30235184-30235802)
               


               
               716-866, gnl|bosTau2|chr11 (51970142-51969992)
               

               
               716-866, gnl|Hg17|chr2 (27516993-27517143)
               

               
               716-866, gnl|Mm7|chr5 (30236545-30236691)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-615, gnl|bosTau2|chr11 (51971667-51971064)
               

               
               1-615, gnl|Hg17|chr2 (27515717-27516325)
               

               
               1-615, gnl|Mm7|chr5 (30235184-30235802)
               


               
               716-866, gnl|bosTau2|chr11 (51970142-51969992)
               

               
               716-866, gnl|Hg17|chr2 (27516993-27517143)
               

               
               716-866, gnl|Mm7|chr5 (30236545-30236691)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               clu (0.239292)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

Expressed library(ies): 13 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

	189-302, - strand, RNAz p=0.748572
	422-541, - strand, RNAz p=0.939172
	716-834, + strand, RNAz p=0.921761

	1-615, gnl\|bosTau2\|chr11 (51971667-51971064)
	1-615, gnl\|Hg17\|chr2 (27515717-27516325)
	1-615, gnl\|Mm7\|chr5 (30235184-30235802)

	716-866, gnl\|bosTau2\|chr11 (51970142-51969992)
	716-866, gnl\|Hg17\|chr2 (27516993-27517143)
	716-866, gnl\|Mm7\|chr5 (30236545-30236691)

	clu (0.239292)
	eje (0.197668)
	col (0.195008)
	nep (0.183925)
	ill (0.175593)
	ton (0.1755)
	csp (0.161186)
	eli (0.151814)
	lnt (0.142308)
	pla (0.133672)
	cov (0.132153)
	ese (0.126502)
	eep (0.122564)