Ss1.1-Pig4-TMW8055M02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTCAAGTGCTACCTCCAGCTGGCGGGCGTCATGGGCAAGAATGAGTGCATGCAGGGCCT TGAAGTTATTGAATCTACAAACTTAAAATACTTCACAAAAGAGATGACAGCCGAATTTTA TGCACTGAAGGGAATGTTCTTGGCTCAGATCAACAAGTCTGAGGAAGCAAACAAGGCCTT TTCTGCGGCTGTGCAGATGCACGATGTGCTGGTGAAAGCTTGGGCCATGTGGGGCGACTA CCTGGAGAACATCTTTGTGAAGGAGCGGCAGCTGCATCTTGGGGTGTCTGCCATTACCTG TTACCTGCACGCGTGCCGGCATCAGAACGAGAGCAAATCAAGAAAATACTTGGCCAAGGT GCTGTGGCTTTTGAGTTTTGATGATGACAAAAATACCTTGGCTGATGCTGTGGACAAGTA CTGCATCGGGGTACCGCCCATCCAGTGGCTGGCCTGGATCCCACAGCTGCTCACCTGTCT GGTTGGCTCCGAGGGAAAGCTGCTCTTGAACCTCATTAGCCAGGTGGGACGCGTGTACCC CCAAGCCGTCTACTTCCCCATCCGGACCCTCTACCTGACCCTAAAGATAGAGCAGCGGGA GCGCTACAAGAGCGATTCTGGACAGCAGCAGCCAAGTTCAGTGGGTAACCAGTCCCATTC TGCATCAGATCCAGGGCCCATAAGAGCCACAGCCCCCATGTGGCGCTGCAGCCGAATCAT GCACATGCAGCGGGAGCTACACCCGACCCTGCTGTCTTCCCTGGAAGGCATCGTCGACCA GATGGTCTGGTTCCGAGAGAACTGGCACGAGGAGGTTCTCAGGCAGCTCCAGCAGGGCCT GGCCAAGTGCTACTCGGTCGCCTTTGAGAAAAGCGGGGCTGTGTCGGACGCCAAAATCAC CCCCCACACTCTCAACTTTGTCAAGAAGCTGGTGAGCACGTTCGGGGTGGGCTTGGAGAA CGTGTCCAACGTCTCGACCATGTTCTCCAGCGCGGCCTCCGAGTCTCTCGCCCGGCGGGC GCAGGCCACCGCGCAGGACCCTGTCTTCCAGAAGCTGAAGGGCCAGTTCACCACTGATTT GGACTTCAGTGTTCCAGGATCCATGAAGCTGCATAATCTTATTTCTAAATTGAAAAAGTG GATCAAAATCCTGGAGGCTAAAACCAAGCAGCTGCCAAAATTCTTCCTCATAGAAGAAAA GTGCCGGTTTTTGAGCAATTTCTCGGCACAGACGGCTGAGGTGGAGATTCCTGGGGAGTT TCTGATGCCGAAGCCGACCCACTACTACATCAAGATCGCCAGGTTTATGCCCCGGGTGGA GATCGTGCAGAAGCACAACACCGCCGCCAGGAGGCTGTACATCCGCGGGCACAACGGCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTCAAGTGCTACCTCCAGCTGGCGGGCGTCATGGGCAAGAATGAGTGCATGCAGGGCCT TGAAGTTATTGAATCTACAAACTTAAAATACTTCACAAAAGAGATGACAGCCGAATTTTA TGCACTGAAGGGAATGTTCTTGGCTCAGATCAACAAGTCTGAGGAAGCAAACAAGGCCTT TTCTGCGGCTGTGCAGATGCACGATGTGCTGGTGAAAGCTTGGGCCATGTGGGGCGACTA CCTGGAGAACATCTTTGTGAAGGAGCGGCAGCTGCATCTTGGGGTGTCTGCCATTACCTG TTACCTGCACGCGTGCCGGCATCAGAACGAGAGCAAATCAAGAAAATACTTGGCCAAGGT GCTGTGGCTTTTGAGTTTTGATGATGACAAAAATACCTTGGCTGATGCTGTGGACAAGTA CTGCATCGGGGTACCGCCCATCCAGTGGCTGGCCTGGATCCCACAGCTGCTCACCTGTCT GGTTGGCTCCGAGGGAAAGCTGCTCTTGAACCTCATTAGCCAGGTGGGACGCGTGTACCC CCAAGCCGTCTACTTCCCCATCCGGACCCTCTACCTGACCCTAAAGATAGAGCAGCGGGA GCGCTACAAGAGCGATTCTGGACAGCAGCAGCCAAGTTCAGTGGGTAACCAGTCCCATTC TGCATCAGATCCAGGGCCCATAAGAGCCACAGCCCCCATGTGGCGCTGCAGCCGAATCAT GCACATGCAGCGGGAGCTACACCCGACCCTGCTGTCTTCCCTGGAAGGCATCGTCGACCA GATGGTCTGGTTCCGAGAGAACTGGCACGAGGAGGTTCTCAGGCAGCTCCAGCAGGGCCT GGCCAAGTGCTACTCGGTCGCCTTTGAGAAAAGCGGGGCTGTGTCGGACGCCAAAATCAC CCCCCACACTCTCAACTTTGTCAAGAAGCTGGTGAGCACGTTCGGGGTGGGCTTGGAGAA CGTGTCCAACGTCTCGACCATGTTCTCCAGCGCGGCCTCCGAGTCTCTCGCCCGGCGGGC GCAGGCCACCGCGCAGGACCCTGTCTTCCAGAAGCTGAAGGGCCAGTTCACCACTGATTT GGACTTCAGTGTTCCAGGATCCATGAAGCTGCATAATCTTATTTCTAAATTGAAAAAGTG GATCAAAATCCTGGAGGCTAAAACCAAGCAGCTGCCAAAATTCTTCCTCATAGAAGAAAA GTGCCGGTTTTTGAGCAATTTCTCGGCACAGACGGCTGAGGTGGAGATTCCTGGGGAGTT TCTGATGCCGAAGCCGACCCACTACTACATCAAGATCGCCAGGTTTATGCCCCGGGTGGA GATCGTGCAGAAGCACAACACCGCCGCCAGGAGGCTGTACATCCGCGGGCACAACGGCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 892-1274, - strand, RNAz p=0.723329 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 892-1274, - strand, RNAz p=0.723329 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 154-361, gnl|bosTau2|chr25 (35277902-35278109) | |
| 154-361, gnl|Hg17|chr7 (98231036-98231243) | |
| 154-361, gnl|Mm7|chr5 (143871174-143871381) | |
| 813-1074, gnl|bosTau2|chr25 (35283284-35283545) | |
| 813-1074, gnl|Hg17|chr7 (98236859-98237120) | |
| 813-1074, gnl|Mm7|chr5 (143875006-143875267) | |
| 1076-1316, gnl|bosTau2|chr25 (35285495-35285735) | |
| 1076-1316, gnl|canFam2|chr6 (13542528-13542283) | |
| 1076-1316, gnl|danRer3|chr12 (12811874-12812105) | |
| 1076-1316, gnl|dasNov1|scaffold_121958 (1089-844) | |
| 1076-1316, gnl|fr1|chrUn (64766787-64767040) | |
| 1076-1316, gnl|galGal2|chr14 (3586144-3586395) | |
| 1076-1316, gnl|hg17|chr7 (98246453-98246698) | |
| 1076-1316, gnl|Hg17|chr7 (98246463-98246703) | |
| 1076-1316, gnl|loxAfr1|scaffold_49152 (845-1090) | |
| 1076-1316, gnl|mm7|chr5 (143878490-143878734) | |
| 1076-1316, gnl|Mm7|chr5 (143878499-143878739) | |
| 1076-1316, gnl|monDom2|scaffold_19 (45746897-45747140) | |
| 1076-1316, gnl|oryCun1|scaffold_97516 (7582-7337) | |
| 1076-1316, gnl|panTro1|chr6 (99951318-99951563) | |
| 1076-1316, gnl|rheMac2|chr3 (46202004-46202249) | |
| 1076-1316, gnl|rn3|chr12 (10093790-10093537) | |
| 1076-1316, gnl|tetNig1|chr2 (3777239-3777004) | |
| 1076-1316, gnl|xenTro1|scaffold_6 (1688518-1688264) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 154-361, gnl|bosTau2|chr25 (35277902-35278109) | |
| 154-361, gnl|Hg17|chr7 (98231036-98231243) | |
| 154-361, gnl|Mm7|chr5 (143871174-143871381) | |
| 813-1074, gnl|bosTau2|chr25 (35283284-35283545) | |
| 813-1074, gnl|Hg17|chr7 (98236859-98237120) | |
| 813-1074, gnl|Mm7|chr5 (143875006-143875267) | |
| 1076-1316, gnl|bosTau2|chr25 (35285495-35285735) | |
| 1076-1316, gnl|canFam2|chr6 (13542528-13542283) | |
| 1076-1316, gnl|danRer3|chr12 (12811874-12812105) | |
| 1076-1316, gnl|dasNov1|scaffold_121958 (1089-844) | |
| 1076-1316, gnl|fr1|chrUn (64766787-64767040) | |
| 1076-1316, gnl|galGal2|chr14 (3586144-3586395) | |
| 1076-1316, gnl|hg17|chr7 (98246453-98246698) | |
| 1076-1316, gnl|Hg17|chr7 (98246463-98246703) | |
| 1076-1316, gnl|loxAfr1|scaffold_49152 (845-1090) | |
| 1076-1316, gnl|mm7|chr5 (143878490-143878734) | |
| 1076-1316, gnl|Mm7|chr5 (143878499-143878739) | |
| 1076-1316, gnl|monDom2|scaffold_19 (45746897-45747140) | |
| 1076-1316, gnl|oryCun1|scaffold_97516 (7582-7337) | |
| 1076-1316, gnl|panTro1|chr6 (99951318-99951563) | |
| 1076-1316, gnl|rheMac2|chr3 (46202004-46202249) | |
| 1076-1316, gnl|rn3|chr12 (10093790-10093537) | |
| 1076-1316, gnl|tetNig1|chr2 (3777239-3777004) | |
| 1076-1316, gnl|xenTro1|scaffold_6 (1688518-1688264) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |