Non-Coding RNA Search

Ss1.1-Pig4-TMW8055M15.3

Sequence:


               
               TTTGGATCTTTTTACTTTGAGCATATATTTTAGAAAATGTGTATGTTAAAGGATCACCAC
AATGTCTTTCGGCAGATTCATTGTGGGATAGTTTGTTAACAGTCAGGAAAGCTAAACTGG
TCAGTATTAATGTCTAGCCCTACCAAAAATAGCCGGTAGCATCTGAGGTTGAAAAATAAA
TGAAGTATCTCCAGGAAACAGTCTGGCTTAACTATTTTTGAAAATATAACTGTTTCCCCT
CTCTGCTGCTTTAGATGTTGCTTTACATAGAACCAGGAATTTTTCACAGCTAAAGCATGT
ATGCCTGTTTCATCTAATCAAGCAGAGTTAAAATAGTCATATCAAATAAAATTATAATAT
TAATTACTAAACTAAGAGTATCACATTATTAGAGTAATTTATATATTTGCAAGCAAAGGA
CGATAAAGGACTGGCAGGAGAGCTGTGCTGAAGAAGGAGATCCAGGTTTAAATCTGGCTT
TACTCAAGCCAATTTTAAGGATTTACTGTATAGACTATTCCTAATGTCAGGCCAAGAATT
TAAATTATTATAAGAGAGGCATTAAATTTAAATAAACCAACTATTGCAAAAATTCTCAAA
TGATCTCTGTTTCTCCTATCAGAGATTTAAAAATCTGAAAAAGTATACCTCAACCAGAAA
ATAAAAGTTCGGTTTAGTTTGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGGATCTTTTTACTTTGAGCATATATTTTAGAAAATGTGTATGTTAAAGGATCACCAC
AATGTCTTTCGGCAGATTCATTGTGGGATAGTTTGTTAACAGTCAGGAAAGCTAAACTGG
TCAGTATTAATGTCTAGCCCTACCAAAAATAGCCGGTAGCATCTGAGGTTGAAAAATAAA
TGAAGTATCTCCAGGAAACAGTCTGGCTTAACTATTTTTGAAAATATAACTGTTTCCCCT
CTCTGCTGCTTTAGATGTTGCTTTACATAGAACCAGGAATTTTTCACAGCTAAAGCATGT
ATGCCTGTTTCATCTAATCAAGCAGAGTTAAAATAGTCATATCAAATAAAATTATAATAT
TAATTACTAAACTAAGAGTATCACATTATTAGAGTAATTTATATATTTGCAAGCAAAGGA
CGATAAAGGACTGGCAGGAGAGCTGTGCTGAAGAAGGAGATCCAGGTTTAAATCTGGCTT
TACTCAAGCCAATTTTAAGGATTTACTGTATAGACTATTCCTAATGTCAGGCCAAGAATT
TAAATTATTATAAGAGAGGCATTAAATTTAAATAAACCAACTATTGCAAAAATTCTCAAA
TGATCTCTGTTTCTCCTATCAGAGATTTAAAAATCTGAAAAAGTATACCTCAACCAGAAA
ATAAAAGTTCGGTTTAGTTTGAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-338, + strand, RNAz p=0.986769

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-338, + strand, RNAz p=0.986769

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               29-123, + strand, RNAmicro p=0.996797

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               29-123, + strand, RNAmicro p=0.996797

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002040, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002040, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-681, gnl|bosTau2|chr1 (8035692-8036387)
               

               
               1-681, gnl|Hg17|chr21 (26063567-26064246)
               

               
               1-681, gnl|Mm7|chr16 (84859341-84859972)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-681, gnl|bosTau2|chr1 (8035692-8036387)
               

               
               1-681, gnl|Hg17|chr21 (26063567-26064246)
               

               
               1-681, gnl|Mm7|chr16 (84859341-84859972)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               rec (0.17307)
               

               
               spl (0.143184)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               spl (0.143184)
               

               
               spc (0.113366)

	1-681, gnl\|bosTau2\|chr1 (8035692-8036387)
	1-681, gnl\|Hg17\|chr21 (26063567-26064246)
	1-681, gnl\|Mm7\|chr16 (84859341-84859972)