Non-Coding RNA Search

Ss1.1-Pig4-TMW8055M16.5

Sequence:


               
               TGTCCAGCGCAGAGCGCGAGATCCGGCTCGGGGAGGGATGGAGGCGGGCGGACTGGCGGA
CTCGCTCCTTTCCGGAGCTTGCGTGCTCTTCACCCTCGGCATGTTCTCCACCGGCCTCTC
GGACCTCAAGCACATGCGGATGACCCGGAGCGTGGACAGTGTCCAGTTCCTGCCCTTTCT
CACCACGGATGCCAACAATCTGGGCTGGCTGAGTTATGGGGCCTTGAAGGGAAACGGGAC
GCTAATCGTCGTCAATGCTGTGGGTGCTGTGCTTCAGACCCTGTATATCTTGGTGTATCT
GCACTACTGCCATCGGAAGGGTGCTGTGCTCCTTCAGACTGCAACCCTGCTGGTGGTCCT
TGTCCTGGGTTTTGGCTACTTTTGTCTCCTGGTGCCTGACCTTGAGACCCGGCTGCAGCA
GCTGGGCCTCTTCTGCAGTATCTTCACCATCAGTATGTACCTCTCACCACTAGCGGACTT
GGCCAAAGTCATTCAGACTAAATCAACCCAGCGCCTCTCCTTTTCACTCACCATTGCCAC
CCTCCTCACCTCTGCCTCCTGGACCCTCTATGGGTTTCGAATAGAAGATCCCTACATTGT
GGTGCCCAACCTTCCAGGAATCCTCACCAGCCTCATTCGCCTCTGGCTTTTCTGGAAGTA
CCCTCCAGGAGCAAGACAGGAACTATCAGCTTCTGCAAACCTGAGGGAGTTCATCTGACT
GCTGGGCACCTTAATGCCAACCTGTGGCCAAAGACACCTGCTTGTTTCAGCTGTTCCTGT
TGATCGCTCCACAGATGCAGTGGGTTTTGGTAAAGGAAAAGGGACAGCTTTGAAAATTCA
GGGACTAAAGAAAGAGCTTTACTTAGAAGACTGGAACTGGGAGATGAATCACTTTTTGTT
TTGTTTTCCCCCAAGATTTCATTTTTTAATTTTGGAGGTGGGGATGAAATCTTTAGAATG
TGCCTTAAAATAAATTGTTCCCTACCCCTGCCAAAAAAAAAAAAAAGGGGGGGCCGTTTT
AAATTTTCCTTGGGGGGGCCAAAGTTTACCCTTCCCCTTTTTTTTTGAAAAAGGGGGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCCAGCGCAGAGCGCGAGATCCGGCTCGGGGAGGGATGGAGGCGGGCGGACTGGCGGA
CTCGCTCCTTTCCGGAGCTTGCGTGCTCTTCACCCTCGGCATGTTCTCCACCGGCCTCTC
GGACCTCAAGCACATGCGGATGACCCGGAGCGTGGACAGTGTCCAGTTCCTGCCCTTTCT
CACCACGGATGCCAACAATCTGGGCTGGCTGAGTTATGGGGCCTTGAAGGGAAACGGGAC
GCTAATCGTCGTCAATGCTGTGGGTGCTGTGCTTCAGACCCTGTATATCTTGGTGTATCT
GCACTACTGCCATCGGAAGGGTGCTGTGCTCCTTCAGACTGCAACCCTGCTGGTGGTCCT
TGTCCTGGGTTTTGGCTACTTTTGTCTCCTGGTGCCTGACCTTGAGACCCGGCTGCAGCA
GCTGGGCCTCTTCTGCAGTATCTTCACCATCAGTATGTACCTCTCACCACTAGCGGACTT
GGCCAAAGTCATTCAGACTAAATCAACCCAGCGCCTCTCCTTTTCACTCACCATTGCCAC
CCTCCTCACCTCTGCCTCCTGGACCCTCTATGGGTTTCGAATAGAAGATCCCTACATTGT
GGTGCCCAACCTTCCAGGAATCCTCACCAGCCTCATTCGCCTCTGGCTTTTCTGGAAGTA
CCCTCCAGGAGCAAGACAGGAACTATCAGCTTCTGCAAACCTGAGGGAGTTCATCTGACT
GCTGGGCACCTTAATGCCAACCTGTGGCCAAAGACACCTGCTTGTTTCAGCTGTTCCTGT
TGATCGCTCCACAGATGCAGTGGGTTTTGGTAAAGGAAAAGGGACAGCTTTGAAAATTCA
GGGACTAAAGAAAGAGCTTTACTTAGAAGACTGGAACTGGGAGATGAATCACTTTTTGTT
TTGTTTTCCCCCAAGATTTCATTTTTTAATTTTGGAGGTGGGGATGAAATCTTTAGAATG
TGCCTTAAAATAAATTGTTCCCTACCCCTGCCAAAAAAAAAAAAAAGGGGGGGCCGTTTT
AAATTTTCCTTGGGGGGGCCAAAGTTTACCCTTCCCCTTTTTTTTTGAAAAAGGGGGCCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|6677733|ref|NP_033083.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6677733|ref|NP_033083.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               7-117, gnl|bosTau2|chr3 (9223084-9223194)
               

               
               7-117, gnl|Hg17|chr1 (151921432-151921540)
               

               
               7-117, gnl|Mm7|chr3 (89396902-89396795)
               


               
               313-482, gnl|bosTau2|chr3 (9224440-9224609)
               

               
               313-482, gnl|Hg17|chr1 (151923103-151923272)
               

               
               313-482, gnl|Mm7|chr3 (89395626-89395458)
               


               
               601-992, gnl|bosTau2|chr3 (9225070-9225466)
               

               
               601-992, gnl|Hg17|chr1 (151923728-151924402)
               

               
               601-992, gnl|Mm7|chr3 (89395008-89394653)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-117, gnl|bosTau2|chr3 (9223084-9223194)
               

               
               7-117, gnl|Hg17|chr1 (151921432-151921540)
               

               
               7-117, gnl|Mm7|chr3 (89396902-89396795)
               


               
               313-482, gnl|bosTau2|chr3 (9224440-9224609)
               

               
               313-482, gnl|Hg17|chr1 (151923103-151923272)
               

               
               313-482, gnl|Mm7|chr3 (89395626-89395458)
               


               
               601-992, gnl|bosTau2|chr3 (9225070-9225466)
               

               
               601-992, gnl|Hg17|chr1 (151923728-151924402)
               

               
               601-992, gnl|Mm7|chr3 (89395008-89394653)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               col (0.195008)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ldo (0.0970026)

	7-117, gnl\|bosTau2\|chr3 (9223084-9223194)
	7-117, gnl\|Hg17\|chr1 (151921432-151921540)
	7-117, gnl\|Mm7\|chr3 (89396902-89396795)

	313-482, gnl\|bosTau2\|chr3 (9224440-9224609)
	313-482, gnl\|Hg17\|chr1 (151923103-151923272)
	313-482, gnl\|Mm7\|chr3 (89395626-89395458)

	601-992, gnl\|bosTau2\|chr3 (9225070-9225466)
	601-992, gnl\|Hg17\|chr1 (151923728-151924402)
	601-992, gnl\|Mm7\|chr3 (89395008-89394653)

	col (0.195008)
	rec (0.17307)
	duo (0.172801)
	cut (0.169924)
	csp (0.161186)
	pty (0.142714)
	lnt (0.142308)
	cst (0.140036)
	hlv (0.139256)
	che (0.136314)
	nmm (0.132802)
	cov (0.132153)
	eep (0.122564)
	pgl (0.118483)
	ldo (0.0970026)