Non-Coding RNA Search

Ss1.1-Pig4-TMW8055N01.5

Sequence:


               
               CCTCCAGCTTGTACCTGCAGGACCTGAGCGCCGCCGCCTCCGAATGCATCGACCCCTCGG
TGGTCTTCCCCTACCCGCTCAACGACAGCAGCTCGCCCAAGCCCTGCGCCTCCCCCGACT
CCACCGCCTTCTCCCCGTCCTCGGACTCTCTGCTCTCCTCCGCCGAGTCCTCCCCACGGG
CCAGTCCCGAACCCTTGGCTCTCCACGAGGAGACACCACCCACCACCAGCAGCGACTCTG
AGGAAGAACAAGAGGATGAGGAAGAAATTGATGTTGTTTCTGTGGAAAAGAGGCAGCCCC
CTGCCAAAAGGTCGGAATCGGGGTCACCCTCTGCTGGAGGCCACAGCAAACCTCCTCACA
GCCCCCTGGTCCTTAAGAGATGCCATGTGTCCACGCACCAGCACAATTATGCAGCGCCCC
CCTCCACCAGGAAGGACTATCCCTCTGCCAAGAGGGCTAAGTTGGACAGTGGCAGGGTCC
TGAAACAGATCAGCAACAACCGAAAATGTGCCAGCCCCAGGTCCTCGGACACGGAGGAGA
ATGACAAGAGGCGGACACACAATGTCTTGGAACGCCAGAGGAGAAACGAGCTGAAACGCA
GCTTTTTTGCCCTTCGAGACCAGATCCCAGAGTTGGAGAACAATGAAAAAGCCCCCAAGG
TAGTTATCCTTAAAAAAGCCACAGCTTACATCCTGTCTGTCCAAGCAGAGGAGCAAAAGC
TCGTGTCAGAAAAAGACGTGCTGCGGAAGAGGCGAGAACAGTTGAAACTCAAACTTGAAC
AGCTACGGAACTCTTGCCCATAAATTGACCTATTGGAGGGAGGAACTAGAATGGCCCATG
AATTCTCACTTGTTACTAAGAGAAAGTAAGGAAGAAGGTTCCTTTGGACAGAACTGCTTG
CTGGCCATTATTTGAACTCATTATTACGTATGAACTTTTTCTCGAATGCATGATCCAGTG
CAACCTCACAACCTTGGCTGGGTCTTGGGACTAAAAGGCCTAGACATAATATAAACTGCC
TCAAATGGAACTTTGAGCATAAAAGAACTTTTTTTATGCTTACCATCTTTTTTTTTTTCC
TTTAACAGATTTGTATTTAAAAATTGTTTTTACAAAATCTTAATGTTCAGCAAACTTTCC
TCTGTAAATATGGTCATTAAATGTACATAATTTTAATAAAAAACGTTTATAGCAATTATA
CAAAATTTCAACAAGACATGTATTATAAACCATAATTTTTTTTATTTAAGTACCTTTTCC
TTTTTAAAGTTGATTTTTTTCTATTGTTTTTAGAAAAAAATAAAATATTTGGCAAATATA
TAATTAAGTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCCAGCTTGTACCTGCAGGACCTGAGCGCCGCCGCCTCCGAATGCATCGACCCCTCGG
TGGTCTTCCCCTACCCGCTCAACGACAGCAGCTCGCCCAAGCCCTGCGCCTCCCCCGACT
CCACCGCCTTCTCCCCGTCCTCGGACTCTCTGCTCTCCTCCGCCGAGTCCTCCCCACGGG
CCAGTCCCGAACCCTTGGCTCTCCACGAGGAGACACCACCCACCACCAGCAGCGACTCTG
AGGAAGAACAAGAGGATGAGGAAGAAATTGATGTTGTTTCTGTGGAAAAGAGGCAGCCCC
CTGCCAAAAGGTCGGAATCGGGGTCACCCTCTGCTGGAGGCCACAGCAAACCTCCTCACA
GCCCCCTGGTCCTTAAGAGATGCCATGTGTCCACGCACCAGCACAATTATGCAGCGCCCC
CCTCCACCAGGAAGGACTATCCCTCTGCCAAGAGGGCTAAGTTGGACAGTGGCAGGGTCC
TGAAACAGATCAGCAACAACCGAAAATGTGCCAGCCCCAGGTCCTCGGACACGGAGGAGA
ATGACAAGAGGCGGACACACAATGTCTTGGAACGCCAGAGGAGAAACGAGCTGAAACGCA
GCTTTTTTGCCCTTCGAGACCAGATCCCAGAGTTGGAGAACAATGAAAAAGCCCCCAAGG
TAGTTATCCTTAAAAAAGCCACAGCTTACATCCTGTCTGTCCAAGCAGAGGAGCAAAAGC
TCGTGTCAGAAAAAGACGTGCTGCGGAAGAGGCGAGAACAGTTGAAACTCAAACTTGAAC
AGCTACGGAACTCTTGCCCATAAATTGACCTATTGGAGGGAGGAACTAGAATGGCCCATG
AATTCTCACTTGTTACTAAGAGAAAGTAAGGAAGAAGGTTCCTTTGGACAGAACTGCTTG
CTGGCCATTATTTGAACTCATTATTACGTATGAACTTTTTCTCGAATGCATGATCCAGTG
CAACCTCACAACCTTGGCTGGGTCTTGGGACTAAAAGGCCTAGACATAATATAAACTGCC
TCAAATGGAACTTTGAGCATAAAAGAACTTTTTTTATGCTTACCATCTTTTTTTTTTTCC
TTTAACAGATTTGTATTTAAAAATTGTTTTTACAAAATCTTAATGTTCAGCAAACTTTCC
TCTGTAAATATGGTCATTAAATGTACATAATTTTAATAAAAAACGTTTATAGCAATTATA
CAAAATTTCAACAAGACATGTATTATAAACCATAATTTTTTTTATTTAAGTACCTTTTCC
TTTTTAAAGTTGATTTTTTTCTATTGTTTTTAGAAAAAAATAAAATATTTGGCAAATATA
TAATTAAGTCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6WDE2_MESAU

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6WDE2_MESAU

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               240-438, - strand, RNAz p=0.929561
               

               
               924-1078, + strand, RNAz p=0.998235

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-438, - strand, RNAz p=0.929561
               

               
               924-1078, + strand, RNAz p=0.998235

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002467, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002467, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               240-882, gnl|bosTau2|chr14 (6566077-6566720)
               

               
               240-882, gnl|Hg17|chr8 (128821823-128822409)
               

               
               240-882, gnl|Mm7|chr15 (62063640-62064260)
               


               
               924-1332, gnl|bosTau2|chr14 (6566734-6567109)
               

               
               924-1332, gnl|Hg17|chr8 (128822434-128822855)
               

               
               924-1332, gnl|Mm7|chr15 (62064274-62064667)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               240-882, gnl|bosTau2|chr14 (6566077-6566720)
               

               
               240-882, gnl|Hg17|chr8 (128821823-128822409)
               

               
               240-882, gnl|Mm7|chr15 (62063640-62064260)
               


               
               924-1332, gnl|bosTau2|chr14 (6566734-6567109)
               

               
               924-1332, gnl|Hg17|chr8 (128822434-128822855)
               

               
               924-1332, gnl|Mm7|chr15 (62064274-62064667)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

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               mgp (0.922722)
               

               
               cje (0.495704)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               ecc (0.23007)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.922722)
               

               
               cje (0.495704)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               ecc (0.23007)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	240-438, - strand, RNAz p=0.929561
	924-1078, + strand, RNAz p=0.998235

	240-882, gnl\|bosTau2\|chr14 (6566077-6566720)
	240-882, gnl\|Hg17\|chr8 (128821823-128822409)
	240-882, gnl\|Mm7\|chr15 (62063640-62064260)

	924-1332, gnl\|bosTau2\|chr14 (6566734-6567109)
	924-1332, gnl\|Hg17\|chr8 (128822434-128822855)
	924-1332, gnl\|Mm7\|chr15 (62064274-62064667)

	mgp (0.922722)
	cje (0.495704)
	rec (0.346141)
	vin (0.332557)
	ski (0.29347)
	lin (0.291206)
	spl (0.286369)
	lyg (0.266205)
	ova (0.258264)
	sug (0.254582)
	ecc (0.23007)
	eje (0.197668)
	aor (0.195274)
	nlu (0.191681)
	nep (0.183925)
	fty (0.17584)
	mcp (0.170648)
	cut (0.169924)
	nje (0.16592)
	mga (0.160205)
	eli (0.151814)
	lun (0.150489)
	bla (0.124347)
	eep (0.122564)
	cly (0.120642)
	jca (0.11396)
	cty (0.10408)