Ss1.1-Pig4-TMW8055N03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCACTGCAGGCGCGGCCATGGCGCACATCACCCTCAACCAGTACCTGCAGCAGGTGTACG AAGCAATTGATACCAGAGATGGGGCGTCTTGTGCAGAGCTGGTGTCCTTCAAGCACCCTC ATGTTGCCAACCCACGGCTTCAGTTAGCGTCTCCAGAAGAGAAGTGTCAGCAGGTTTTGG AACCTCCTTATGATGAAATGTTTGCAGCTCATTTAAGGTGCACGTACGCAGTGGGCAACC ACGACTTCATTGAGGCCTACAAGTGCCAGACCGTCATCGTGCAATCATTCCTACGGGCAT TTCAGGCCCACAAAGAAGAAAACTGGGCTCTGCCTGTCATGTACGCCGTGGCCCTTGACC TCCGAATATTTGCCAATAACGCGGATCAGCAGCTGGCAAAGAAGGGCCGGGGCAGAGTCG GGGACATGCTGGAGAAGGCGGCCGAGCTGCTCATGGGCTGCTTCCGCGTCTGCGCCAGTG ACACCCGTGCTGGCATAGAGGATTCTAAGAAGTGGGGCATGCTCTTCCTGGTGAACCAGT TATTCAAGATTTATTTTAAGATCAACAAGCTCCACTTGTGTAAGCCGCTCATCAGAGCCA TCGACAGCTCCAACCTGAAAGACGATTACAGCACTGCCCAGAGGGTGACCTACAGGTACT ACGTGGGGCGGAAGGCCATGTTCGACAGCGACTTCCAGCAAGCCGAGGAGTACCTGTCCT TCGCCTTCCAGCACTGCCACCGCTCCAGCCAGAGGAACAAGCGCCTGGTGCTCATCTACC TGCTGCCCGTGAAGATGCTCCTGGGTCACATGCCGACCATCGAGCTTCTGAAGCGGTACC ATCTCATGCAGTTTGCTGAAGTGACCAAAGCTGTGAGCGAAGGCAACCTCCTGCTGCTGA ATGAGGCCCTGGCCAAGCACGAGGCCTTCTTCATCCGCTGCGGCATCTTCCTCATCCTCG AGAAGCTGAAGATCATCACCTGCAGGAATCTCTTCAAGAAAGTGTACTTGTTACTCAGGA CACACCAGTTGTCCCTGGATGCTTTCCTGGTCGCGCTGAGGTTCATGCAGGTGGACGACG TGGACATCGACGAGGTCCAGTGCCTCCTGGCCAACCTCATCTACATGGGTCACATCAAAG GCTACATATCACATCAGCATCAGAAGCTGGTGGTCAGCAAGCAGAACCCGTTCCCCCCGC TGTCGACCGTGTGCTGAGCACGGGCAGCCCTCCGGCTCCCGCCGAGAACCACGGCATCTC TGGGCTCGTGTCCCAGGTGCGGAGACCAGATTGGCCAGCCCTCGGGGGACCTCAGCCTCC GTCACCGCAGCCGCGCTAGCCACCCGACCAGAGCGGGAGCCCCGTTGTCGGCTCGCCTGT GGCGGGGGCTCCACAGGGAGGGACGTGGTCTCCAGGGCCACTGGCTTGCTTCTCGTGTGG CTCCTGAAGCTGGCTCCGTAATGCTTTCTGTAAAGGGGCCGTCCCAGTCCTGTGCGGATG GCAGACCCTGTACCCCGGCTTCTGGGGTACGTGTTCTATGTTTATTCTGAGTGTCTGTGT GATCAAAATGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCACTGCAGGCGCGGCCATGGCGCACATCACCCTCAACCAGTACCTGCAGCAGGTGTACG AAGCAATTGATACCAGAGATGGGGCGTCTTGTGCAGAGCTGGTGTCCTTCAAGCACCCTC ATGTTGCCAACCCACGGCTTCAGTTAGCGTCTCCAGAAGAGAAGTGTCAGCAGGTTTTGG AACCTCCTTATGATGAAATGTTTGCAGCTCATTTAAGGTGCACGTACGCAGTGGGCAACC ACGACTTCATTGAGGCCTACAAGTGCCAGACCGTCATCGTGCAATCATTCCTACGGGCAT TTCAGGCCCACAAAGAAGAAAACTGGGCTCTGCCTGTCATGTACGCCGTGGCCCTTGACC TCCGAATATTTGCCAATAACGCGGATCAGCAGCTGGCAAAGAAGGGCCGGGGCAGAGTCG GGGACATGCTGGAGAAGGCGGCCGAGCTGCTCATGGGCTGCTTCCGCGTCTGCGCCAGTG ACACCCGTGCTGGCATAGAGGATTCTAAGAAGTGGGGCATGCTCTTCCTGGTGAACCAGT TATTCAAGATTTATTTTAAGATCAACAAGCTCCACTTGTGTAAGCCGCTCATCAGAGCCA TCGACAGCTCCAACCTGAAAGACGATTACAGCACTGCCCAGAGGGTGACCTACAGGTACT ACGTGGGGCGGAAGGCCATGTTCGACAGCGACTTCCAGCAAGCCGAGGAGTACCTGTCCT TCGCCTTCCAGCACTGCCACCGCTCCAGCCAGAGGAACAAGCGCCTGGTGCTCATCTACC TGCTGCCCGTGAAGATGCTCCTGGGTCACATGCCGACCATCGAGCTTCTGAAGCGGTACC ATCTCATGCAGTTTGCTGAAGTGACCAAAGCTGTGAGCGAAGGCAACCTCCTGCTGCTGA ATGAGGCCCTGGCCAAGCACGAGGCCTTCTTCATCCGCTGCGGCATCTTCCTCATCCTCG AGAAGCTGAAGATCATCACCTGCAGGAATCTCTTCAAGAAAGTGTACTTGTTACTCAGGA CACACCAGTTGTCCCTGGATGCTTTCCTGGTCGCGCTGAGGTTCATGCAGGTGGACGACG TGGACATCGACGAGGTCCAGTGCCTCCTGGCCAACCTCATCTACATGGGTCACATCAAAG GCTACATATCACATCAGCATCAGAAGCTGGTGGTCAGCAAGCAGAACCCGTTCCCCCCGC TGTCGACCGTGTGCTGAGCACGGGCAGCCCTCCGGCTCCCGCCGAGAACCACGGCATCTC TGGGCTCGTGTCCCAGGTGCGGAGACCAGATTGGCCAGCCCTCGGGGGACCTCAGCCTCC GTCACCGCAGCCGCGCTAGCCACCCGACCAGAGCGGGAGCCCCGTTGTCGGCTCGCCTGT GGCGGGGGCTCCACAGGGAGGGACGTGGTCTCCAGGGCCACTGGCTTGCTTCTCGTGTGG CTCCTGAAGCTGGCTCCGTAATGCTTTCTGTAAAGGGGCCGTCCCAGTCCTGTGCGGATG GCAGACCCTGTACCCCGGCTTCTGGGGTACGTGTTCTATGTTTATTCTGAGTGTCTGTGT GATCAAAATGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 381-484, + strand, RNAz p=0.677004 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 381-484, + strand, RNAz p=0.677004 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 46-147, gnl|bosTau2|chr12 (46800610-46800711) | |
| 46-147, gnl|canFam2|chr22 (63577213-63577332) | |
| 46-147, gnl|danRer3|chr20 (25960599-25960503) | |
| 46-147, gnl|echTel1|scaffold_283650 (14768-14650) | |
| 46-147, gnl|galGal2|chr1 (130554715-130554587) | |
| 46-147, gnl|hg17|chr13 (112902738-112902855) | |
| 46-147, gnl|Hg17|chr13 (112902839-112902738) | |
| 46-147, gnl|loxAfr1|scaffold_37108 (18348-18463) | |
| 46-147, gnl|mm7|chr8 (13074541-13074657) | |
| 46-147, gnl|Mm7|chr8 (13074641-13074541) | |
| 46-147, gnl|monDom2|scaffold_11 (32240577-32240461) | |
| 46-147, gnl|oryCun1|scaffold_177558 (15187-15288) | |
| 46-147, gnl|panTro1|chr14_random (2821188-2821305) | |
| 46-147, gnl|rheMac2|chr17 (93320880-93320997) | |
| 46-147, gnl|rn3|chr16 (81284462-81284346) | |
| 46-147, gnl|tetNig1|chr3 (1166657-1166765) | |
| 381-484, gnl|bosTau2|chr12 (46807582-46807685) | |
| 381-484, gnl|canFam2|chr22 (63569099-63569222) | |
| 381-484, gnl|danRer3|chr20 (25962407-25962296) | |
| 381-484, gnl|dasNov1|scaffold_138306 (3252-3129) | |
| 381-484, gnl|echTel1|scaffold_324161 (41102-41221) | |
| 381-484, gnl|fr1|chrUn (111162858-111162735) | |
| 381-484, gnl|galGal2|chr1 (130558671-130558558) | |
| 381-484, gnl|hg17|chr13 (112893170-112893293) | |
| 381-484, gnl|Hg17|chr13 (112893290-112893187) | |
| 381-484, gnl|loxAfr1|scaffold_37108 (6171-6294) | |
| 381-484, gnl|mm7|chr8 (13064860-13064983) | |
| 381-484, gnl|Mm7|chr8 (13064980-13064877) | |
| 381-484, gnl|monDom2|scaffold_11 (32266964-32266841) | |
| 381-484, gnl|panTro1|chr14_random (2811417-2811540) | |
| 381-484, gnl|rheMac2|chr17 (93305098-93305221) | |
| 381-484, gnl|rn3|chr16 (81293063-81292945) | |
| 381-484, gnl|tetNig1|chr3 (1165777-1165894) | |
| 381-484, gnl|xenTro1|scaffold_563 (750478-750599) | |
| 559-702, gnl|bosTau2|chr12 (46808760-46808903) | |
| 559-702, gnl|canFam2|chr22 (63565240-63565394) | |
| 559-702, gnl|danRer3|chr20 (25962990-25962842) | |
| 559-702, gnl|echTel1|scaffold_324161 (35784-35937) | |
| 559-702, gnl|fr1|chrUn (111163401-111163240) | |
| 559-702, gnl|galGal2|chr1 (130559715-130559569) | |
| 559-702, gnl|hg17|chr13 (112886651-112886805) | |
| 559-702, gnl|Hg17|chr13 (112886804-112886661) | |
| 559-702, gnl|mm7|chr8 (13059533-13059687) | |
| 559-702, gnl|Mm7|chr8 (13059686-13059543) | |
| 559-702, gnl|monDom2|scaffold_11 (32281998-32281844) | |
| 559-702, gnl|oryCun1|scaffold_203021 (25003-25149) | |
| 559-702, gnl|panTro1|chr14_random (2802483-2802637) | |
| 559-702, gnl|rheMac2|chr17 (93299069-93299223) | |
| 559-702, gnl|rn3|chr16 (81297564-81297410) | |
| 559-702, gnl|tetNig1|chr3 (1165259-1165409) | |
| 559-702, gnl|xenTro1|scaffold_563 (749805-749959) | |
| 876-1005, gnl|bosTau2|chr12 (46811502-46811631) | |
| 876-1005, gnl|Hg17|chr13 (112882359-112882230) | |
| 876-1005, gnl|Mm7|chr8 (13053985-13053856) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-147, gnl|bosTau2|chr12 (46800610-46800711) | |
| 46-147, gnl|canFam2|chr22 (63577213-63577332) | |
| 46-147, gnl|danRer3|chr20 (25960599-25960503) | |
| 46-147, gnl|echTel1|scaffold_283650 (14768-14650) | |
| 46-147, gnl|galGal2|chr1 (130554715-130554587) | |
| 46-147, gnl|hg17|chr13 (112902738-112902855) | |
| 46-147, gnl|Hg17|chr13 (112902839-112902738) | |
| 46-147, gnl|loxAfr1|scaffold_37108 (18348-18463) | |
| 46-147, gnl|mm7|chr8 (13074541-13074657) | |
| 46-147, gnl|Mm7|chr8 (13074641-13074541) | |
| 46-147, gnl|monDom2|scaffold_11 (32240577-32240461) | |
| 46-147, gnl|oryCun1|scaffold_177558 (15187-15288) | |
| 46-147, gnl|panTro1|chr14_random (2821188-2821305) | |
| 46-147, gnl|rheMac2|chr17 (93320880-93320997) | |
| 46-147, gnl|rn3|chr16 (81284462-81284346) | |
| 46-147, gnl|tetNig1|chr3 (1166657-1166765) | |
| 381-484, gnl|bosTau2|chr12 (46807582-46807685) | |
| 381-484, gnl|canFam2|chr22 (63569099-63569222) | |
| 381-484, gnl|danRer3|chr20 (25962407-25962296) | |
| 381-484, gnl|dasNov1|scaffold_138306 (3252-3129) | |
| 381-484, gnl|echTel1|scaffold_324161 (41102-41221) | |
| 381-484, gnl|fr1|chrUn (111162858-111162735) | |
| 381-484, gnl|galGal2|chr1 (130558671-130558558) | |
| 381-484, gnl|hg17|chr13 (112893170-112893293) | |
| 381-484, gnl|Hg17|chr13 (112893290-112893187) | |
| 381-484, gnl|loxAfr1|scaffold_37108 (6171-6294) | |
| 381-484, gnl|mm7|chr8 (13064860-13064983) | |
| 381-484, gnl|Mm7|chr8 (13064980-13064877) | |
| 381-484, gnl|monDom2|scaffold_11 (32266964-32266841) | |
| 381-484, gnl|panTro1|chr14_random (2811417-2811540) | |
| 381-484, gnl|rheMac2|chr17 (93305098-93305221) | |
| 381-484, gnl|rn3|chr16 (81293063-81292945) | |
| 381-484, gnl|tetNig1|chr3 (1165777-1165894) | |
| 381-484, gnl|xenTro1|scaffold_563 (750478-750599) | |
| 559-702, gnl|bosTau2|chr12 (46808760-46808903) | |
| 559-702, gnl|canFam2|chr22 (63565240-63565394) | |
| 559-702, gnl|danRer3|chr20 (25962990-25962842) | |
| 559-702, gnl|echTel1|scaffold_324161 (35784-35937) | |
| 559-702, gnl|fr1|chrUn (111163401-111163240) | |
| 559-702, gnl|galGal2|chr1 (130559715-130559569) | |
| 559-702, gnl|hg17|chr13 (112886651-112886805) | |
| 559-702, gnl|Hg17|chr13 (112886804-112886661) | |
| 559-702, gnl|mm7|chr8 (13059533-13059687) | |
| 559-702, gnl|Mm7|chr8 (13059686-13059543) | |
| 559-702, gnl|monDom2|scaffold_11 (32281998-32281844) | |
| 559-702, gnl|oryCun1|scaffold_203021 (25003-25149) | |
| 559-702, gnl|panTro1|chr14_random (2802483-2802637) | |
| 559-702, gnl|rheMac2|chr17 (93299069-93299223) | |
| 559-702, gnl|rn3|chr16 (81297564-81297410) | |
| 559-702, gnl|tetNig1|chr3 (1165259-1165409) | |
| 559-702, gnl|xenTro1|scaffold_563 (749805-749959) | |
| 876-1005, gnl|bosTau2|chr12 (46811502-46811631) | |
| 876-1005, gnl|Hg17|chr13 (112882359-112882230) | |
| 876-1005, gnl|Mm7|chr8 (13053985-13053856) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| cag (0.302389) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| fty (0.17584) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| nbm (0.0993246) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.302389) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| fty (0.17584) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| nbm (0.0993246) |