Non-Coding RNA Search

Ss1.1-Pig4-TMW8055N05.5

Sequence:


               
               GAAACTGTGTACCAGGGCCTGGAGCACAGAACCAATTGACTGAAGCCTCCTGGGAGGGTT
CAAACTGTTCAGCTATATAAGAAAAGCCTGGACAGGATTTGCGGGCCCCATCCATCTGCT
GCGGCAGCCGTGACTTAGTCTGCACGCTACCCATCTCCAGGTGGGATGGAGGTTCTCCCT
TCATTCGGGCCTGAGAGGCAGCCGCACGCAACCTGAGTGCCTTGGGAGCGACAGATTAAG
TGCCGCTTCAGGGCCCTCGCGGTGTTTCCCTCTCATCTCTGGGGTGTGCTTGCGCGTGCG
TGCGTGTGTGCGGGTGCTCTTATCTGTGGGCACATCAGCGTGCCCCACCCGGAACTCGTC
CCCACCTGTGTGTGAGTGTGTGTCCTCCTCACGTCCATGCTGGGCCACCTGGAGGTCGGC
GTGCCTGTTTTTGCCTCTCTGAGTCCACAGGGTCCGTCAGTGTATCTTCTATGTGCCTCT
CCCTCCACCTTCTCCTGCAGTGCCCCAGGCTCCGGAGGGACCCTCCCCATCTTCGGGATG
ATCCAGGGCCCTCTAGTCCCCTTTCCCTAGCAACCAGGCAGCTGAGCCAGGTCCCTTAGC
AGACGCTCTGAGGAGAGGTGACCAGGAGCCTGGGTACAGGGAGCACCTCCCCTCGGGGCA
AAGGGCTGGACCACCTGCTTGGGCCGTGGATGTGGTTATATGCCTGGCGCCGCAGGGCTG
CAGGGCTGGCCCCAATCCCACCTCTGTTCGTTCTGTAAACTACAGCCTGTAAATAACACT
TAGCATTCCTATTGTAACAAAATTAATTTTTATGAAATAAATTATATTTCCTAGTCGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAACTGTGTACCAGGGCCTGGAGCACAGAACCAATTGACTGAAGCCTCCTGGGAGGGTT
CAAACTGTTCAGCTATATAAGAAAAGCCTGGACAGGATTTGCGGGCCCCATCCATCTGCT
GCGGCAGCCGTGACTTAGTCTGCACGCTACCCATCTCCAGGTGGGATGGAGGTTCTCCCT
TCATTCGGGCCTGAGAGGCAGCCGCACGCAACCTGAGTGCCTTGGGAGCGACAGATTAAG
TGCCGCTTCAGGGCCCTCGCGGTGTTTCCCTCTCATCTCTGGGGTGTGCTTGCGCGTGCG
TGCGTGTGTGCGGGTGCTCTTATCTGTGGGCACATCAGCGTGCCCCACCCGGAACTCGTC
CCCACCTGTGTGTGAGTGTGTGTCCTCCTCACGTCCATGCTGGGCCACCTGGAGGTCGGC
GTGCCTGTTTTTGCCTCTCTGAGTCCACAGGGTCCGTCAGTGTATCTTCTATGTGCCTCT
CCCTCCACCTTCTCCTGCAGTGCCCCAGGCTCCGGAGGGACCCTCCCCATCTTCGGGATG
ATCCAGGGCCCTCTAGTCCCCTTTCCCTAGCAACCAGGCAGCTGAGCCAGGTCCCTTAGC
AGACGCTCTGAGGAGAGGTGACCAGGAGCCTGGGTACAGGGAGCACCTCCCCTCGGGGCA
AAGGGCTGGACCACCTGCTTGGGCCGTGGATGTGGTTATATGCCTGGCGCCGCAGGGCTG
CAGGGCTGGCCCCAATCCCACCTCTGTTCGTTCTGTAAACTACAGCCTGTAAATAACACT
TAGCATTCCTATTGTAACAAAATTAATTTTTATGAAATAAATTATATTTCCTAGTCGCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               538-657, - strand, RNAz p=0.999427

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               538-657, - strand, RNAz p=0.999427

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               606-727, - strand, RNAmicro p=0.998694

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               606-727, - strand, RNAmicro p=0.998694

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-836, gnl|bosTau2|chr28 (21746991-21746180)
               

               
               1-836, gnl|Hg17|chr10 (72731757-72732619)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-836, gnl|bosTau2|chr28 (21746991-21746180)
               

               
               1-836, gnl|Hg17|chr10 (72731757-72732619)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               col (0.195008)
               

               
               pla (0.133672)
               

               
               cov (0.132153)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               pla (0.133672)
               

               
               cov (0.132153)

	1-836, gnl\|bosTau2\|chr28 (21746991-21746180)
	1-836, gnl\|Hg17\|chr10 (72731757-72732619)