Non-Coding RNA Search

Ss1.1-Pig4-TMW8055N06.3

Sequence:


               
               CCCTGCTGCCTCCCAACAGCCATTCCAATGTGGAGTGGGGTGGAGGCCGTGCAGAGCGCC
GTGAATTCTCAGGGCTCCTGCTTTCTGTCCTGTTGTCACTTCACTGTTTCTGTCGGGAGA
GCCGTGGGACAAAGTCCCGGACCCCTCTCTTCCCTCCCTCCCTCGGGAATGAGAATCACA
GAAGCATTCCTGGCGAGGGGGAAGGGTCCTTCCTGCCTTCCTCTTTTTTTTGCCCTTGTT
TCTCAACAAGCATCAAGTCTGTTCACAGAGTGTCCCACTGCCTCAGGGTCCTAACGCGGG
CCACTGCACAGAGGCCTCCGGCTCCTAGACCCGTCGGCTCCAAGCCCTGGAGCCAACCGC
TGCTTTTCTCAGTGGTACGTCTTTGTTTGCCTGGTCCCACGCCCGCACAGTTCAGTGACA
GGGTTCAGGATTTTGTGGGTCTGTTTTCCTTTCTCCCTGCAGTTGCCGCCCAGTCTCTTC
CTCTCTCCAGAGTCTGCGACTTGAAGCAGCTCTTGCTAATCAGTGTCTGACACTGGTGTA
GAAGTTTTTTGTACTGTAAAGAGACCTACCTCAGGTTGCTGATTGCCGTGTGGTTCGGTG
TGTTCTCGCAAACCCCGTTTGTGCTGTGGGGCCAGTAGCTCAGGTGGGCGTGGTCGCTGC
TGTCATCTGTCGAATGGTCAGCGTTGCATGTCGTGACCAACTAGACATTCTGTCGCCTTA
GCATGTTTGCTGAACACTTGTGGAAGCAAAAATCTGAAAAAGTGAATAAAATTATTTTGG
ATTTTCTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTGCTGCCTCCCAACAGCCATTCCAATGTGGAGTGGGGTGGAGGCCGTGCAGAGCGCC
GTGAATTCTCAGGGCTCCTGCTTTCTGTCCTGTTGTCACTTCACTGTTTCTGTCGGGAGA
GCCGTGGGACAAAGTCCCGGACCCCTCTCTTCCCTCCCTCCCTCGGGAATGAGAATCACA
GAAGCATTCCTGGCGAGGGGGAAGGGTCCTTCCTGCCTTCCTCTTTTTTTTGCCCTTGTT
TCTCAACAAGCATCAAGTCTGTTCACAGAGTGTCCCACTGCCTCAGGGTCCTAACGCGGG
CCACTGCACAGAGGCCTCCGGCTCCTAGACCCGTCGGCTCCAAGCCCTGGAGCCAACCGC
TGCTTTTCTCAGTGGTACGTCTTTGTTTGCCTGGTCCCACGCCCGCACAGTTCAGTGACA
GGGTTCAGGATTTTGTGGGTCTGTTTTCCTTTCTCCCTGCAGTTGCCGCCCAGTCTCTTC
CTCTCTCCAGAGTCTGCGACTTGAAGCAGCTCTTGCTAATCAGTGTCTGACACTGGTGTA
GAAGTTTTTTGTACTGTAAAGAGACCTACCTCAGGTTGCTGATTGCCGTGTGGTTCGGTG
TGTTCTCGCAAACCCCGTTTGTGCTGTGGGGCCAGTAGCTCAGGTGGGCGTGGTCGCTGC
TGTCATCTGTCGAATGGTCAGCGTTGCATGTCGTGACCAACTAGACATTCTGTCGCCTTA
GCATGTTTGCTGAACACTTGTGGAAGCAAAAATCTGAAAAAGTGAATAAAATTATTTTGG
ATTTTCTAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               105-262, + strand, RNAz p=0.985133

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               105-262, + strand, RNAz p=0.985133

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005688, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005688, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-791, gnl|bosTau2|chr1 (51566828-51566035)
               

               
               1-791, gnl|Hg17|chr3 (185121227-185120424)
               

               
               1-791, gnl|Mm7|chr16 (19882075-19881323)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-791, gnl|bosTau2|chr1 (51566828-51566035)
               

               
               1-791, gnl|Hg17|chr3 (185121227-185120424)
               

               
               1-791, gnl|Mm7|chr16 (19882075-19881323)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cki (0.330469)
               

               
               cga (0.279096)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.330469)
               

               
               cga (0.279096)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)

	1-791, gnl\|bosTau2\|chr1 (51566828-51566035)
	1-791, gnl\|Hg17\|chr3 (185121227-185120424)
	1-791, gnl\|Mm7\|chr16 (19882075-19881323)

	cki (0.330469)
	cga (0.279096)
	fbs (0.175346)
	cut (0.169924)
	cje (0.165235)
	hyp (0.142837)
	lnt (0.142308)
	nca (0.136874)
	bla (0.124347)
	ecc (0.115035)