Non-Coding RNA Search

Ss1.1-Pig4-TMW8055N08.5

Sequence:


               
               AGCCTTGCTTGGGCTGTGGGGGAAACAGGGGGGTTCTGTGTGAAGGGAGGGCTTCTGGTT
TCAACGTCATGAGAAAATGCCTGGGGGAGTGCATGGCTAACTCTGCTTCCCTTGGCTACA
CCTGTAAGTGGAGTCCAGGGAACTGAGGTTGGAACTGGCTGCTGTACGAGGGTAGGAGTG
AGAGGATTGCATGTCTAGAGTGGAATTCCTTGCTCCCAGGTACCAATGCAAAAGCTAAGG
GGATGCAAACGAATTAAAGAACTCTGATTAGGCAAAACATCAACTCAGTTGATTTGACGA
TTCGGAGCTCCCAGTGAGGGTGGTCAGTCAGGGCCTCTGGCCTTCATGAGAGCAAGAACG
TAGGTCTGGAGACCCAGGCCCTGCCATTTGGCTTGGGTTGGGGGGTCAAAGAGGCAACAG
GCTGTAACTGGGAAGATCTGCTTCGACAATCCAGCCTTTGCAGAGCCTCATGAATTAGAC
CTCTCATTAAAACAACAAACCAACTCAACAGAAGCAAGGACCCAGCAAAGAAACCCACAA
ATGCACTCTTTGTGTGTCCCTGGTAACCTGAGACAGAAAGGGCTTCTACTTTCCTCCTGC
TTGCAATCTGTAAGTGCTTGCCTGGGCAGTTGCGCTCAGGTGTGAGAGGATGAAATTGAC
CCCCTCACCCACTTTGGGGATGTTCTGCCTAATCTGTACATGGCCCTGTTCTAGGAAATA
TGGCCCAAACCTCCAATGTTGTAATATTCCTGCATGCTCGTGTGTGTGTCTGTGTGAAAA
AGCCAACGTAGTTGGTGCCAGTTGGTTTCACTAAGGGAGTACAACCTGCCCTGCTGTCAT
TCTCCACCTCTTTACTTCATCTGTTCTGTTACTTTGACTCAGATATTGGATTCATAGCGT
TACGACTTGATCTCATTGATGAAACGTGAGCTTCTGTGTTAATAAAGACACATCCAACCA
ATCTATACTGTCATTTGAAATCTATGTAGTTTTTTGCAGTCCAGAACTTCTCAATGACTG
CTTGCCTTTGAACTTGAAATTTTAAAAACCCACATAGCCCAAACAAATGATAAGAGGTTG
CCTAATTTCAGAGTCTAGCTTGGGGCTCTGAGGCGGAACCCAAGAGTGAACTGCCCTAAA
AAGGCAAATGCCCATGGAAAGATTTGTCTGAGGATGGCTATCGCGTATCTGTTTTTGTTT
TACTAGAATAGCTCAATCTACAGTGTCTGCTCCTCACGGTGGTAGATGTCCTCACTTTTC
TCAGTTGGTGTCGCCAAGAGGAGCATAGTAATGTATCTTAATATCGCCTGAGAACCTTGT
CTCACATTGCTTGTAGTATCTTTCAACAGACTCAGACTTCATATGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCTTGCTTGGGCTGTGGGGGAAACAGGGGGGTTCTGTGTGAAGGGAGGGCTTCTGGTT
TCAACGTCATGAGAAAATGCCTGGGGGAGTGCATGGCTAACTCTGCTTCCCTTGGCTACA
CCTGTAAGTGGAGTCCAGGGAACTGAGGTTGGAACTGGCTGCTGTACGAGGGTAGGAGTG
AGAGGATTGCATGTCTAGAGTGGAATTCCTTGCTCCCAGGTACCAATGCAAAAGCTAAGG
GGATGCAAACGAATTAAAGAACTCTGATTAGGCAAAACATCAACTCAGTTGATTTGACGA
TTCGGAGCTCCCAGTGAGGGTGGTCAGTCAGGGCCTCTGGCCTTCATGAGAGCAAGAACG
TAGGTCTGGAGACCCAGGCCCTGCCATTTGGCTTGGGTTGGGGGGTCAAAGAGGCAACAG
GCTGTAACTGGGAAGATCTGCTTCGACAATCCAGCCTTTGCAGAGCCTCATGAATTAGAC
CTCTCATTAAAACAACAAACCAACTCAACAGAAGCAAGGACCCAGCAAAGAAACCCACAA
ATGCACTCTTTGTGTGTCCCTGGTAACCTGAGACAGAAAGGGCTTCTACTTTCCTCCTGC
TTGCAATCTGTAAGTGCTTGCCTGGGCAGTTGCGCTCAGGTGTGAGAGGATGAAATTGAC
CCCCTCACCCACTTTGGGGATGTTCTGCCTAATCTGTACATGGCCCTGTTCTAGGAAATA
TGGCCCAAACCTCCAATGTTGTAATATTCCTGCATGCTCGTGTGTGTGTCTGTGTGAAAA
AGCCAACGTAGTTGGTGCCAGTTGGTTTCACTAAGGGAGTACAACCTGCCCTGCTGTCAT
TCTCCACCTCTTTACTTCATCTGTTCTGTTACTTTGACTCAGATATTGGATTCATAGCGT
TACGACTTGATCTCATTGATGAAACGTGAGCTTCTGTGTTAATAAAGACACATCCAACCA
ATCTATACTGTCATTTGAAATCTATGTAGTTTTTTGCAGTCCAGAACTTCTCAATGACTG
CTTGCCTTTGAACTTGAAATTTTAAAAACCCACATAGCCCAAACAAATGATAAGAGGTTG
CCTAATTTCAGAGTCTAGCTTGGGGCTCTGAGGCGGAACCCAAGAGTGAACTGCCCTAAA
AAGGCAAATGCCCATGGAAAGATTTGTCTGAGGATGGCTATCGCGTATCTGTTTTTGTTT
TACTAGAATAGCTCAATCTACAGTGTCTGCTCCTCACGGTGGTAGATGTCCTCACTTTTC
TCAGTTGGTGTCGCCAAGAGGAGCATAGTAATGTATCTTAATATCGCCTGAGAACCTTGT
CTCACATTGCTTGTAGTATCTTTCAACAGACTCAGACTTCATATGCCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               57-176, + strand, RNAz p=0.667967
               

               
               320-426, - strand, RNAz p=0.952581

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               57-176, + strand, RNAz p=0.667967
               

               
               320-426, - strand, RNAz p=0.952581

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               57-232, gnl|bosTau2|chr10 (51112828-51112657)
               

               
               57-232, gnl|Hg17|chr14 (72206139-72205924)
               

               
               57-232, gnl|Mm7|chr12 (81265347-81265164)
               


               
               244-1322, gnl|bosTau2|chr10 (51112668-51111593)
               

               
               244-1322, gnl|Hg17|chr14 (72205961-72204861)
               

               
               244-1322, gnl|Mm7|chr12 (81265198-81263989)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-232, gnl|bosTau2|chr10 (51112828-51112657)
               

               
               57-232, gnl|Hg17|chr14 (72206139-72205924)
               

               
               57-232, gnl|Mm7|chr12 (81265347-81265164)
               


               
               244-1322, gnl|bosTau2|chr10 (51112668-51111593)
               

               
               244-1322, gnl|Hg17|chr14 (72205961-72204861)
               

               
               244-1322, gnl|Mm7|chr12 (81265198-81263989)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	57-176, + strand, RNAz p=0.667967
	320-426, - strand, RNAz p=0.952581

	57-232, gnl\|bosTau2\|chr10 (51112828-51112657)
	57-232, gnl\|Hg17\|chr14 (72206139-72205924)
	57-232, gnl\|Mm7\|chr12 (81265347-81265164)

	244-1322, gnl\|bosTau2\|chr10 (51112668-51111593)
	244-1322, gnl\|Hg17\|chr14 (72205961-72204861)
	244-1322, gnl\|Mm7\|chr12 (81265198-81263989)