Non-Coding RNA Search

Ss1.1-Pig4-TMW8055N14.3

Sequence:


               
               AGCATCTCCTCATCCTCTCTGTGTGCATTTTTTTAACCAAATGAAGTAGACCAGGAAGTC
ATACTCTGGGGCAGCGGAAGTTCTAGTGTAGTAGAATCACTGTATAGATGTAGATGTTGA
TATATATGTTTGTGTATATATATATCAAGCCAAATTTCTGATAGGAAAAGTATAGCTTTA
CAGATGAGGAGGAAGAGGCGATTTGAAAAGCCTGAGTCAGTGTTGGTTGGCATATTAGAG
GAGCCCTGGACCACAGCCCAGGCTGCATCTTCGCACGTGGGCCCAAGGCAGGGCGCCCGG
CCCCCCGCCACCACCTCGCCACTGCGGAGGCAAGAGGCCCTGCAGGGTGCCACTGCTCTC
TCTGGGTCCCCAGCGACAAGGGCATAGACGAGTGAGGGGAGGCAACACATCAGGATGACT
GGAATTTTCCATCCCGTTTTGCTTCGACCGTGGGTATTGAGCGGCAGCCTCTGATATTCT
ATCCCATTTCCAAAAATGGTATCCATTAGGCCGGAAAGAGAACGGATCCGTAGAAATGTT
GACCTTGCAGCTGCCCACGAATTCAGGACACTCTGGACAGGAAGACACACTCCCCAGAAC
GAGAGCAGGGAAGAGGGGACCGGGGGAGGCTCGGTCCCCGGTCCAAGGAACGTAGCTCCT
CCCCAGGGTCGTCTCGCCCAGACCTTCTCTACCAGGTCCCTCCGCTCAGTTACCCTCGGG
AAGCCCTGCTCTGTTGTGTTCCTTCACTGTACGGTTTCTGTAATAAAAAGTGTTAATCCA
TGTTAATCCTTGTGAAAACTATTGCGTGCAACAGTATTTTCTCGTGTACCTCTTTTTCCT
ATGTGAATTGTCCCTCTTTTCTTTTTTTATTTATAAATGTCTACTTTTTTTAAAAGACAA
ACCAATGTGTTGTAGGCCTATATGTAACCTATTCCTTAGTCTCATATTATAGGTATGTTA
TAAGAATGGATATTTTACTTGGCTTTAGAATGTTTTACAAGAAAAATAATTCTTATCTGA
TCAAGTCCTTGCTACTAAAATGCTTGTGTTTTTCATCATGACGTCGTGTGCTTCTAAATT
AATGATCATTTTCGTTGTAGAAAAATGGAGTGAATTTATATTAGTCTTGGAAACTAATAA
TAGCATTGTAAATTTATGAGATGATTTTAACAGAAAAAAAATTATAGAAGAATATAGTTA
TTTTAATTGTAATATTACTAACTGTAGGGTGAGAAAGGGGGGTCCCGTCGTGTGAACTAT
GTTATAGCTTGTTACTCACAGTTTCTTTTTGATCATTTTTTCGGTCTCTGAGGTGAAACG
AGTTATTAATTAAAATTCGTAAACTCACATATGCATATTGTATATGTGTAGAAATGTAAT
CACACTCTGTCTTGGAATTACATTAAACTGTTTGGAATCACTGTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCATCTCCTCATCCTCTCTGTGTGCATTTTTTTAACCAAATGAAGTAGACCAGGAAGTC
ATACTCTGGGGCAGCGGAAGTTCTAGTGTAGTAGAATCACTGTATAGATGTAGATGTTGA
TATATATGTTTGTGTATATATATATCAAGCCAAATTTCTGATAGGAAAAGTATAGCTTTA
CAGATGAGGAGGAAGAGGCGATTTGAAAAGCCTGAGTCAGTGTTGGTTGGCATATTAGAG
GAGCCCTGGACCACAGCCCAGGCTGCATCTTCGCACGTGGGCCCAAGGCAGGGCGCCCGG
CCCCCCGCCACCACCTCGCCACTGCGGAGGCAAGAGGCCCTGCAGGGTGCCACTGCTCTC
TCTGGGTCCCCAGCGACAAGGGCATAGACGAGTGAGGGGAGGCAACACATCAGGATGACT
GGAATTTTCCATCCCGTTTTGCTTCGACCGTGGGTATTGAGCGGCAGCCTCTGATATTCT
ATCCCATTTCCAAAAATGGTATCCATTAGGCCGGAAAGAGAACGGATCCGTAGAAATGTT
GACCTTGCAGCTGCCCACGAATTCAGGACACTCTGGACAGGAAGACACACTCCCCAGAAC
GAGAGCAGGGAAGAGGGGACCGGGGGAGGCTCGGTCCCCGGTCCAAGGAACGTAGCTCCT
CCCCAGGGTCGTCTCGCCCAGACCTTCTCTACCAGGTCCCTCCGCTCAGTTACCCTCGGG
AAGCCCTGCTCTGTTGTGTTCCTTCACTGTACGGTTTCTGTAATAAAAAGTGTTAATCCA
TGTTAATCCTTGTGAAAACTATTGCGTGCAACAGTATTTTCTCGTGTACCTCTTTTTCCT
ATGTGAATTGTCCCTCTTTTCTTTTTTTATTTATAAATGTCTACTTTTTTTAAAAGACAA
ACCAATGTGTTGTAGGCCTATATGTAACCTATTCCTTAGTCTCATATTATAGGTATGTTA
TAAGAATGGATATTTTACTTGGCTTTAGAATGTTTTACAAGAAAAATAATTCTTATCTGA
TCAAGTCCTTGCTACTAAAATGCTTGTGTTTTTCATCATGACGTCGTGTGCTTCTAAATT
AATGATCATTTTCGTTGTAGAAAAATGGAGTGAATTTATATTAGTCTTGGAAACTAATAA
TAGCATTGTAAATTTATGAGATGATTTTAACAGAAAAAAAATTATAGAAGAATATAGTTA
TTTTAATTGTAATATTACTAACTGTAGGGTGAGAAAGGGGGGTCCCGTCGTGTGAACTAT
GTTATAGCTTGTTACTCACAGTTTCTTTTTGATCATTTTTTCGGTCTCTGAGGTGAAACG
AGTTATTAATTAAAATTCGTAAACTCACATATGCATATTGTATATGTGTAGAAATGTAAT
CACACTCTGTCTTGGAATTACATTAAACTGTTTGGAATCACTGTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               576-692, - strand, RNAz p=0.931379
               

               
               1261-1425, - strand, RNAz p=0.988911

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               576-692, - strand, RNAz p=0.931379
               

               
               1261-1425, - strand, RNAz p=0.988911

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               608-703, - strand, RNAmicro p=0.961242

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               608-703, - strand, RNAmicro p=0.961242

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1425, gnl|bosTau2|chr4 (56649339-56647894)
               

               
               1-1425, gnl|Hg17|chr7 (138704990-138703571)
               

               
               1-1425, gnl|Mm7|chr6 (38619819-38618437)
               


               
               892-1347, gnl|bosTau2|chr20 (2469423-2469868)
               

               
               892-1347, gnl|Hg17|chr7 (138704105-138703649)
               

               
               892-1347, gnl|Mm7|chr6 (38618953-38618513)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1425, gnl|bosTau2|chr4 (56649339-56647894)
               

               
               1-1425, gnl|Hg17|chr7 (138704990-138703571)
               

               
               1-1425, gnl|Mm7|chr6 (38619819-38618437)
               


               
               892-1347, gnl|bosTau2|chr20 (2469423-2469868)
               

               
               892-1347, gnl|Hg17|chr7 (138704105-138703649)
               

               
               892-1347, gnl|Mm7|chr6 (38618953-38618513)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

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               fce (0.543183)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               spc (0.113366)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               spc (0.113366)

	576-692, - strand, RNAz p=0.931379
	1261-1425, - strand, RNAz p=0.988911

	1-1425, gnl\|bosTau2\|chr4 (56649339-56647894)
	1-1425, gnl\|Hg17\|chr7 (138704990-138703571)
	1-1425, gnl\|Mm7\|chr6 (38619819-38618437)

	892-1347, gnl\|bosTau2\|chr20 (2469423-2469868)
	892-1347, gnl\|Hg17\|chr7 (138704105-138703649)
	892-1347, gnl\|Mm7\|chr6 (38618953-38618513)

	fce (0.543183)
	ret (0.257467)
	cbe (0.239234)
	mgp (0.230681)
	ecc (0.23007)
	hea (0.204499)
	fbs (0.175346)
	mga (0.160205)
	fco (0.157208)
	lun (0.150489)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	lnt (0.142308)
	che (0.136314)
	ste (0.135208)
	spc (0.113366)