Non-Coding RNA Search

Ss1.1-Pig4-TMW8055N19.3

Sequence:


               
               CCGCAGCGGCCTCAGTAGCTGCAGCAGCCAGTGGTGACCTGGGCTGGATGGCAGAGACAG
CCGCCATTATCACAGATGCCTCCTTCCTATCTGGCCTGAGCGCCTCCCTCCTGGACCGGA
GGCCAGCCAGTTCCCTGAGCCCCACTGGGGGGCTCACCCAGGCCCCCCAGGACAGTGCCC
CTCCCAGCGACTCCCCAGGGCCTGACACAGCCCCTCAGACCGCCGGGTTGAGTCGGCCCA
GCCTTGTGTCTATGGCTCCGGTGGACACACCCTCGGAGGTTGGTTCCTGAGCCCTGGGCA
AATTGACCGCCTCTGTCCCTGGCCATCCAGGCCAGCTGGGTATGGCCTGGCTAGAGCCCT
CGGGGGTCAGGGAGGCTGTTCCCAGTGGCTCGGACTGCCCACCCCGCCTTGAGTGGAATC
GGGGTCCATCAGGTTTGCTTGGAGGCAGGCTTCTCTTCCCCAGGACGCGGGGCCTGCCTG
AAGCTTGTCCCTGTTTGTGGTGGGCCTCCTCAGCTGGTGAATCAAGACAAGCCAATGAGC
CGGGGTGGGAGAGGGGGCGGGGGCTCCCTGGAAAGTTCTGGAAGGGGTTTGTGAAAGGTC
TGGAGCGAGCTGTCCCCAGGCAGAGCAGGCAGGTCTCTGAGCAAGGTGAACATGGGTGGG
GCCAGCTCCGCTGGTGCTCCGTCGTGCGCAGTGCCTTTCCACGGCCACCCTGCGTTCCCC
GGGCTGGGGTCCCGAGGAGGCAGTACCTGCGCCTCAGGTCTAGCGCACAGCCACCAACAT
TGAAGGCAGCCACTGGGCACCAGGGGCCTGCCCTGCTCAGGGTGGGGAACGGCCTGCGGC
CCAACCCAATCACTTGGTGAGGAACGCAGAAGAGTGCTCATTCCACTCTATTTAATTGCA
GTGTACAAAATGGTGTTTGTATATAGAATAAACTGTCTGTTGACAGCGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCAGCGGCCTCAGTAGCTGCAGCAGCCAGTGGTGACCTGGGCTGGATGGCAGAGACAG
CCGCCATTATCACAGATGCCTCCTTCCTATCTGGCCTGAGCGCCTCCCTCCTGGACCGGA
GGCCAGCCAGTTCCCTGAGCCCCACTGGGGGGCTCACCCAGGCCCCCCAGGACAGTGCCC
CTCCCAGCGACTCCCCAGGGCCTGACACAGCCCCTCAGACCGCCGGGTTGAGTCGGCCCA
GCCTTGTGTCTATGGCTCCGGTGGACACACCCTCGGAGGTTGGTTCCTGAGCCCTGGGCA
AATTGACCGCCTCTGTCCCTGGCCATCCAGGCCAGCTGGGTATGGCCTGGCTAGAGCCCT
CGGGGGTCAGGGAGGCTGTTCCCAGTGGCTCGGACTGCCCACCCCGCCTTGAGTGGAATC
GGGGTCCATCAGGTTTGCTTGGAGGCAGGCTTCTCTTCCCCAGGACGCGGGGCCTGCCTG
AAGCTTGTCCCTGTTTGTGGTGGGCCTCCTCAGCTGGTGAATCAAGACAAGCCAATGAGC
CGGGGTGGGAGAGGGGGCGGGGGCTCCCTGGAAAGTTCTGGAAGGGGTTTGTGAAAGGTC
TGGAGCGAGCTGTCCCCAGGCAGAGCAGGCAGGTCTCTGAGCAAGGTGAACATGGGTGGG
GCCAGCTCCGCTGGTGCTCCGTCGTGCGCAGTGCCTTTCCACGGCCACCCTGCGTTCCCC
GGGCTGGGGTCCCGAGGAGGCAGTACCTGCGCCTCAGGTCTAGCGCACAGCCACCAACAT
TGAAGGCAGCCACTGGGCACCAGGGGCCTGCCCTGCTCAGGGTGGGGAACGGCCTGCGGC
CCAACCCAATCACTTGGTGAGGAACGCAGAAGAGTGCTCATTCCACTCTATTTAATTGCA
GTGTACAAAATGGTGTTTGTATATAGAATAAACTGTCTGTTGACAGCGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-435, + strand, RNAz p=0.999997

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-435, + strand, RNAz p=0.999997

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               309-443, - strand, RNAmicro p=0.999002

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               309-443, - strand, RNAmicro p=0.999002

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of DQ005958, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of DQ005958, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-936, gnl|bosTau2|chr7 (10283567-10282665)
               

               
               1-936, gnl|Hg17|chr19 (961638-960660)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-936, gnl|bosTau2|chr7 (10283567-10282665)
               

               
               1-936, gnl|Hg17|chr19 (961638-960660)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               elu (0.385356)
               

               
               eru (0.360144)
               

               
               med (0.348756)
               

               
               mas (0.210305)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               eru (0.360144)
               

               
               med (0.348756)
               

               
               mas (0.210305)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	1-936, gnl\|bosTau2\|chr7 (10283567-10282665)
	1-936, gnl\|Hg17\|chr19 (961638-960660)

	elu (0.385356)
	eru (0.360144)
	med (0.348756)
	mas (0.210305)
	jej (0.197844)
	fcc (0.197785)
	nep (0.183925)
	fbs (0.175346)
	cki (0.165235)
	cag (0.151194)
	pty (0.142714)
	hlv (0.139256)
	thg (0.126791)
	ese (0.126502)
	pgl (0.118483)
	ebs (0.118301)
	jca (0.11396)
	nbm (0.0993246)
	eje (0.0988338)