Ss1.1-Pig4-TMW8055N24.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGCTTCTGCGGAGGCTGCGTCGGGTTCTTGGCGAAGGGACAAAGCCCCGCGGCCTAAGT GGCCGAGTCGGAGAAACCCACGGGTACCCGCGGCCCTCGGAGCACAGCCCTCCTTATAGC CTGGAAAAAATGACAGATCTTGTAGCCGTTTGGGATGTTGCTTTAAGTGATGGAGTTCAT AAGATTGAATTTGAACATGGGACCACATCAGGCAAAAGAGTGGTATATGTAGATGGGAAG GAAGAGATAAGAAAAGAATGGATGTTCAAATTAGTGGGCAAAGAAACCTTCTGTGTTGGA GCCGCAAAGACAAAAGCAACCATAAATATAGATGCTGTCAGTGGTTTTGCTTATGAATAT ACTCTGGAAATTAATGGGAAGAGTCTCAAGAAGTATATGGAGAGCAGATCAAAAACCACC AACACTTGGGTACTGCAGTTGGATAATGAGGACTTTAGAGTTGTGTTGGAAAAAGACACT ATGGATGTCTGGTGCAATGGTAAAAAAATGGAGACGGCAGGCGAGTTTGTAGATGATGGG ACTGAAACTCACTTCAGTATTGGGAACCATGACTGTTACATAAAAGCCGTCAGTAGTGGG AAGCGGAAAGAAGGGATTATTCATACACTCATTGTGGATAATAGAGAAATCGCAGAAATT CCTTAATGACTTCACATTAATGAATTTTAATCTTAAGAAGTAAAGATCAAGACTTTTAAA TTACTGTGGTAATTAAATATGTCCAGTATGTACTTTTCAGTACATTTAGTTGCCATGTTT TTATTTTTTAATTACTTGAAACTGTAGTGTTCCAAGGGTCAGGAAAAAAAATTATGTATC ATAAGAATTGCAGTTTATTTTATAAATAATGTAAAATGTTCTAAAGTTAAATGGAAAATA AGTTGTGGACCAAAATCACTAATGTTTTACAAGAGCAACTTTTACTATAATAAATACTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGCTTCTGCGGAGGCTGCGTCGGGTTCTTGGCGAAGGGACAAAGCCCCGCGGCCTAAGT GGCCGAGTCGGAGAAACCCACGGGTACCCGCGGCCCTCGGAGCACAGCCCTCCTTATAGC CTGGAAAAAATGACAGATCTTGTAGCCGTTTGGGATGTTGCTTTAAGTGATGGAGTTCAT AAGATTGAATTTGAACATGGGACCACATCAGGCAAAAGAGTGGTATATGTAGATGGGAAG GAAGAGATAAGAAAAGAATGGATGTTCAAATTAGTGGGCAAAGAAACCTTCTGTGTTGGA GCCGCAAAGACAAAAGCAACCATAAATATAGATGCTGTCAGTGGTTTTGCTTATGAATAT ACTCTGGAAATTAATGGGAAGAGTCTCAAGAAGTATATGGAGAGCAGATCAAAAACCACC AACACTTGGGTACTGCAGTTGGATAATGAGGACTTTAGAGTTGTGTTGGAAAAAGACACT ATGGATGTCTGGTGCAATGGTAAAAAAATGGAGACGGCAGGCGAGTTTGTAGATGATGGG ACTGAAACTCACTTCAGTATTGGGAACCATGACTGTTACATAAAAGCCGTCAGTAGTGGG AAGCGGAAAGAAGGGATTATTCATACACTCATTGTGGATAATAGAGAAATCGCAGAAATT CCTTAATGACTTCACATTAATGAATTTTAATCTTAAGAAGTAAAGATCAAGACTTTTAAA TTACTGTGGTAATTAAATATGTCCAGTATGTACTTTTCAGTACATTTAGTTGCCATGTTT TTATTTTTTAATTACTTGAAACTGTAGTGTTCCAAGGGTCAGGAAAAAAAATTATGTATC ATAAGAATTGCAGTTTATTTTATAAATAATGTAAAATGTTCTAAAGTTAAATGGAAAATA AGTTGTGGACCAAAATCACTAATGTTTTACAAGAGCAACTTTTACTATAATAAATACTAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 239-467, gnl|bosTau2|chr1 (81813023-81812795) | |
| 239-467, gnl|canFam2|chr23 (37868869-37869109) | |
| 239-467, gnl|danRer3|chr16 (20245363-20245126) | |
| 239-467, gnl|dasNov1|scaffold_12664 (30418-30630) | |
| 239-467, gnl|echTel1|scaffold_252590 (6988-7228) | |
| 239-467, gnl|fr1|chrUn (26854192-26854431) | |
| 239-467, gnl|galGal2|chr7 (28962293-28962053) | |
| 239-467, gnl|hg17|chr3 (139823724-139823964) | |
| 239-467, gnl|Hg17|chr3 (139823726-139823954) | |
| 239-467, gnl|loxAfr1|scaffold_116104 (662-902) | |
| 239-467, gnl|mm7|chr9 (98876120-98875880) | |
| 239-467, gnl|Mm7|chr9 (98876116-98875888) | |
| 239-467, gnl|monDom2|scaffold_24 (33864020-33864260) | |
| 239-467, gnl|oryCun1|scaffold_172681 (38115-38355) | |
| 239-467, gnl|panTro1|chr2 (142336872-142337112) | |
| 239-467, gnl|rheMac2|chr2 (149196484-149196244) | |
| 239-467, gnl|rn3|chr8 (103860401-103860641) | |
| 239-467, gnl|tetNig1|chr2 (16108091-16107852) | |
| 239-467, gnl|xenTro1|scaffold_2236 (24530-24293) | |
| 784-960, gnl|bosTau2|chr1 (81803384-81803210) | |
| 784-960, gnl|Hg17|chr3 (139834723-139834908) | |
| 784-960, gnl|Mm7|chr9 (98643390-98643556) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 239-467, gnl|bosTau2|chr1 (81813023-81812795) | |
| 239-467, gnl|canFam2|chr23 (37868869-37869109) | |
| 239-467, gnl|danRer3|chr16 (20245363-20245126) | |
| 239-467, gnl|dasNov1|scaffold_12664 (30418-30630) | |
| 239-467, gnl|echTel1|scaffold_252590 (6988-7228) | |
| 239-467, gnl|fr1|chrUn (26854192-26854431) | |
| 239-467, gnl|galGal2|chr7 (28962293-28962053) | |
| 239-467, gnl|hg17|chr3 (139823724-139823964) | |
| 239-467, gnl|Hg17|chr3 (139823726-139823954) | |
| 239-467, gnl|loxAfr1|scaffold_116104 (662-902) | |
| 239-467, gnl|mm7|chr9 (98876120-98875880) | |
| 239-467, gnl|Mm7|chr9 (98876116-98875888) | |
| 239-467, gnl|monDom2|scaffold_24 (33864020-33864260) | |
| 239-467, gnl|oryCun1|scaffold_172681 (38115-38355) | |
| 239-467, gnl|panTro1|chr2 (142336872-142337112) | |
| 239-467, gnl|rheMac2|chr2 (149196484-149196244) | |
| 239-467, gnl|rn3|chr8 (103860401-103860641) | |
| 239-467, gnl|tetNig1|chr2 (16108091-16107852) | |
| 239-467, gnl|xenTro1|scaffold_2236 (24530-24293) | |
| 784-960, gnl|bosTau2|chr1 (81803384-81803210) | |
| 784-960, gnl|Hg17|chr3 (139834723-139834908) | |
| 784-960, gnl|Mm7|chr9 (98643390-98643556) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cbe (0.956938) | |
| ova (0.645661) | |
| ret (0.514933) | |
| spc (0.453463) | |
| cki (0.330469) | |
| lyg (0.266205) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| gul (0.177588) | |
| sin (0.174948) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| kid (0.129735) | |
| tra (0.123092) | |
| pgl (0.118483) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.956938) | |
| ova (0.645661) | |
| ret (0.514933) | |
| spc (0.453463) | |
| cki (0.330469) | |
| lyg (0.266205) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| gul (0.177588) | |
| sin (0.174948) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| kid (0.129735) | |
| tra (0.123092) | |
| pgl (0.118483) |