Ss1.1-Pig4-TMW8055O07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTCAAAGAGGGGAAATACGAAAGAGCAATTGAGTGCTATACTCGAGGGATGGCAGCA GATGGCGCTAATGCCCTTCTTCCAGCTAACAGAGCAATGGCCTATCTGAAGATTCAGAAA TATGAAGAGGCTGAAAAAGATTGCACACAAGCTATTTTATTAGATGGCTCCTATTCTAAA GCTTTTGCTAGAAGAGGAACTGCACGAACATTTTTGGGAAAGTTAAATGAGGCCAAACAA GATTTTGAGACCGTTTTACTTCTGGAACCTGGAAATAAGCAAGCAGTAACCGAACTTTCT AAAATTAAAAAGGAATTAATTGACAGAGGACACTGGGACGATGTCTTTCTCGATTCTACT CAAAGGCAAAACGTGGTAAGACCCATTGATAATCCACCTCATCGAGGATCAACTAAACCG CTCAAGAAGGTTATTATTGAAGAGACTGGTAATTTGATACAGACTGTTGATGTGCCAAAT AGCACTACTCCTGCTGCTCCAGAGCATAATCCTATTAATCTAGCAAATGTAATAGCAGCC ACAGGCACGACAAGCGAGAACTCAAGCCAGGATGACCTTTTGCCCACAAGTGATATCCCA AAAGCAAAAGTATTGAAAATAGAAGAAATCAGTGATCCTTCAGCTCTGCAATCTCAAGTC AGTTTGAAAAAGGATGTATGTCAGTCTTTCAGTGAGAAGATTTCTGTAGAAGTAGACAGA ACACCTGCTCAGGTTATCAGGACTGTCCTTCCTCCAGTTCCTGCAAACTCATTTCAGCTT GAATCTGATTTCAGACAATTGAAAAATTCACCAGATTTGTTGTATCAGTATTTGAAGCAA ATTGAACCATCCTTGTATCCTAAGGTGTTTCAGAAAAATTTAGATCCAGATGTATTCAAC CAGATCATTAAAATTCTGCATGACTTTTACATTGAGAAAGAAAAGCCATCACTCATCTTT GAAATCTTAAAAAGACTTTCTGAACTAAGAAGGTTTGATATGGCTGTGATGTTCATGTCA GAACCTGAGAAAAAAATTACACATGTATTATTCAATCACATAGACAAATCAGGATTGAAT GATAATTCTGTCGAAGAACTCAAAAAAAGATACGGTAGTTGATTTCCATTTTTACTGAAA TTATTGTCTTTGACTTTCACATGTAAATTTTTTCTTCTGAAAATAAAGTGTTTTGTTTTG CTTTTTAAGAAAACGAAATCATATAGGAAAAGGACTCTTTGGATGTAAGCTCATTAACTA TAATGTGAATTATGTTTTAACTAGTGAGAAATATACTTAAACGAACTATTTATTAGAAGT CTTTTTTTCTGAAAATAAAAATACAAATAATGAAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTCAAAGAGGGGAAATACGAAAGAGCAATTGAGTGCTATACTCGAGGGATGGCAGCA GATGGCGCTAATGCCCTTCTTCCAGCTAACAGAGCAATGGCCTATCTGAAGATTCAGAAA TATGAAGAGGCTGAAAAAGATTGCACACAAGCTATTTTATTAGATGGCTCCTATTCTAAA GCTTTTGCTAGAAGAGGAACTGCACGAACATTTTTGGGAAAGTTAAATGAGGCCAAACAA GATTTTGAGACCGTTTTACTTCTGGAACCTGGAAATAAGCAAGCAGTAACCGAACTTTCT AAAATTAAAAAGGAATTAATTGACAGAGGACACTGGGACGATGTCTTTCTCGATTCTACT CAAAGGCAAAACGTGGTAAGACCCATTGATAATCCACCTCATCGAGGATCAACTAAACCG CTCAAGAAGGTTATTATTGAAGAGACTGGTAATTTGATACAGACTGTTGATGTGCCAAAT AGCACTACTCCTGCTGCTCCAGAGCATAATCCTATTAATCTAGCAAATGTAATAGCAGCC ACAGGCACGACAAGCGAGAACTCAAGCCAGGATGACCTTTTGCCCACAAGTGATATCCCA AAAGCAAAAGTATTGAAAATAGAAGAAATCAGTGATCCTTCAGCTCTGCAATCTCAAGTC AGTTTGAAAAAGGATGTATGTCAGTCTTTCAGTGAGAAGATTTCTGTAGAAGTAGACAGA ACACCTGCTCAGGTTATCAGGACTGTCCTTCCTCCAGTTCCTGCAAACTCATTTCAGCTT GAATCTGATTTCAGACAATTGAAAAATTCACCAGATTTGTTGTATCAGTATTTGAAGCAA ATTGAACCATCCTTGTATCCTAAGGTGTTTCAGAAAAATTTAGATCCAGATGTATTCAAC CAGATCATTAAAATTCTGCATGACTTTTACATTGAGAAAGAAAAGCCATCACTCATCTTT GAAATCTTAAAAAGACTTTCTGAACTAAGAAGGTTTGATATGGCTGTGATGTTCATGTCA GAACCTGAGAAAAAAATTACACATGTATTATTCAATCACATAGACAAATCAGGATTGAAT GATAATTCTGTCGAAGAACTCAAAAAAAGATACGGTAGTTGATTTCCATTTTTACTGAAA TTATTGTCTTTGACTTTCACATGTAAATTTTTTCTTCTGAAAATAAAGTGTTTTGTTTTG CTTTTTAAGAAAACGAAATCATATAGGAAAAGGACTCTTTGGATGTAAGCTCATTAACTA TAATGTGAATTATGTTTTAACTAGTGAGAAATATACTTAAACGAACTATTTATTAGAAGT CTTTTTTTCTGAAAATAAAAATACAAATAATGAAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 936-1036, + strand, RNAz p=0.76125 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 936-1036, + strand, RNAz p=0.76125 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 1-122, gnl|bosTau2|chr5 (24619029-24618908) | |
| 1-122, gnl|canFam2|chr27 (10091078-10090917) | |
| 1-122, gnl|danRer3|chr4 (761583-761718) | |
| 1-122, gnl|dasNov1|scaffold_13692 (47473-47313) | |
| 1-122, gnl|echTel1|scaffold_316460 (39862-40024) | |
| 1-122, gnl|fr1|chrUn (191212425-191212560) | |
| 1-122, gnl|galGal2|chr1 (28352902-28353051) | |
| 1-122, gnl|hg17|chr12 (46366826-46366987) | |
| 1-122, gnl|Hg17|chr12 (46366948-46366827) | |
| 1-122, gnl|loxAfr1|scaffold_5246 (36687-36526) | |
| 1-122, gnl|mm7|chr15 (97688682-97688837) | |
| 1-122, gnl|Mm7|chr15 (97688804-97688683) | |
| 1-122, gnl|monDom2|scaffold_88 (3113210-3113328) | |
| 1-122, gnl|oryCun1|scaffold_140547 (5062-5217) | |
| 1-122, gnl|panTro1|chr10 (47351078-47351239) | |
| 1-122, gnl|rheMac2|chr11 (44754893-44755054) | |
| 1-122, gnl|rn3|chr7 (13351210-13351345) | |
| 1-122, gnl|tetNig1|chrUn_random (55002957-55003091) | |
| 1-122, gnl|xenTro1|scaffold_66 (2698720-2698858) | |
| 310-414, gnl|bosTau2|chr5 (24610156-24610052) | |
| 310-414, gnl|Hg17|chr12 (46359647-46359543) | |
| 310-414, gnl|Mm7|chr15 (97684503-97684402) | |
| 415-650, gnl|bosTau2|chr5 (24605202-24604964) | |
| 415-650, gnl|canFam2|chr27 (10102436-10102125) | |
| 415-650, gnl|dasNov1|scaffold_46581 (4681-4997) | |
| 415-650, gnl|echTel1|scaffold_308450 (4074-4379) | |
| 415-650, gnl|hg17|chr12 (46350141-46350456) | |
| 415-650, gnl|Hg17|chr12 (46350395-46350157) | |
| 415-650, gnl|loxAfr1|scaffold_5246 (49795-49479) | |
| 415-650, gnl|mm7|chr15 (97682169-97682475) | |
| 415-650, gnl|Mm7|chr15 (97682414-97682194) | |
| 415-650, gnl|monDom2|scaffold_262 (42320-42627) | |
| 415-650, gnl|oryCun1|scaffold_194369 (7325-7626) | |
| 415-650, gnl|panTro1|chr10 (47334403-47334718) | |
| 415-650, gnl|rheMac2|chr11 (44738148-44738463) | |
| 415-650, gnl|rn3|chr7 (136469059-136469348) | |
| 652-837, gnl|bosTau2|chr5 (24603724-24603539) | |
| 652-837, gnl|canFam2|chr27 (10103880-10103670) | |
| 652-837, gnl|dasNov1|scaffold_46581 (3537-3747) | |
| 652-837, gnl|echTel1|scaffold_308450 (2758-2972) | |
| 652-837, gnl|hg17|chr12 (46348906-46349113) | |
| 652-837, gnl|Hg17|chr12 (46349151-46348966) | |
| 652-837, gnl|loxAfr1|scaffold_5246 (51350-51144) | |
| 652-837, gnl|mm7|chr15 (97680879-97681057) | |
| 652-837, gnl|Mm7|chr15 (97681095-97680910) | |
| 652-837, gnl|monDom2|scaffold_262 (40123-40345) | |
| 652-837, gnl|oryCun1|scaffold_194369 (6059-6258) | |
| 652-837, gnl|panTro1|chr10 (47333164-47333371) | |
| 652-837, gnl|rheMac2|chr11 (44736896-44737106) | |
| 652-837, gnl|rn3|chr7 (136463697-136463911) | |
| 936-1036, gnl|bosTau2|chr5 (24601880-24601780) | |
| 936-1036, gnl|Hg17|chr12 (46347130-46347030) | |
| 936-1036, gnl|Mm7|chr15 (97679061-97678961) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-122, gnl|bosTau2|chr5 (24619029-24618908) | |
| 1-122, gnl|canFam2|chr27 (10091078-10090917) | |
| 1-122, gnl|danRer3|chr4 (761583-761718) | |
| 1-122, gnl|dasNov1|scaffold_13692 (47473-47313) | |
| 1-122, gnl|echTel1|scaffold_316460 (39862-40024) | |
| 1-122, gnl|fr1|chrUn (191212425-191212560) | |
| 1-122, gnl|galGal2|chr1 (28352902-28353051) | |
| 1-122, gnl|hg17|chr12 (46366826-46366987) | |
| 1-122, gnl|Hg17|chr12 (46366948-46366827) | |
| 1-122, gnl|loxAfr1|scaffold_5246 (36687-36526) | |
| 1-122, gnl|mm7|chr15 (97688682-97688837) | |
| 1-122, gnl|Mm7|chr15 (97688804-97688683) | |
| 1-122, gnl|monDom2|scaffold_88 (3113210-3113328) | |
| 1-122, gnl|oryCun1|scaffold_140547 (5062-5217) | |
| 1-122, gnl|panTro1|chr10 (47351078-47351239) | |
| 1-122, gnl|rheMac2|chr11 (44754893-44755054) | |
| 1-122, gnl|rn3|chr7 (13351210-13351345) | |
| 1-122, gnl|tetNig1|chrUn_random (55002957-55003091) | |
| 1-122, gnl|xenTro1|scaffold_66 (2698720-2698858) | |
| 310-414, gnl|bosTau2|chr5 (24610156-24610052) | |
| 310-414, gnl|Hg17|chr12 (46359647-46359543) | |
| 310-414, gnl|Mm7|chr15 (97684503-97684402) | |
| 415-650, gnl|bosTau2|chr5 (24605202-24604964) | |
| 415-650, gnl|canFam2|chr27 (10102436-10102125) | |
| 415-650, gnl|dasNov1|scaffold_46581 (4681-4997) | |
| 415-650, gnl|echTel1|scaffold_308450 (4074-4379) | |
| 415-650, gnl|hg17|chr12 (46350141-46350456) | |
| 415-650, gnl|Hg17|chr12 (46350395-46350157) | |
| 415-650, gnl|loxAfr1|scaffold_5246 (49795-49479) | |
| 415-650, gnl|mm7|chr15 (97682169-97682475) | |
| 415-650, gnl|Mm7|chr15 (97682414-97682194) | |
| 415-650, gnl|monDom2|scaffold_262 (42320-42627) | |
| 415-650, gnl|oryCun1|scaffold_194369 (7325-7626) | |
| 415-650, gnl|panTro1|chr10 (47334403-47334718) | |
| 415-650, gnl|rheMac2|chr11 (44738148-44738463) | |
| 415-650, gnl|rn3|chr7 (136469059-136469348) | |
| 652-837, gnl|bosTau2|chr5 (24603724-24603539) | |
| 652-837, gnl|canFam2|chr27 (10103880-10103670) | |
| 652-837, gnl|dasNov1|scaffold_46581 (3537-3747) | |
| 652-837, gnl|echTel1|scaffold_308450 (2758-2972) | |
| 652-837, gnl|hg17|chr12 (46348906-46349113) | |
| 652-837, gnl|Hg17|chr12 (46349151-46348966) | |
| 652-837, gnl|loxAfr1|scaffold_5246 (51350-51144) | |
| 652-837, gnl|mm7|chr15 (97680879-97681057) | |
| 652-837, gnl|Mm7|chr15 (97681095-97680910) | |
| 652-837, gnl|monDom2|scaffold_262 (40123-40345) | |
| 652-837, gnl|oryCun1|scaffold_194369 (6059-6258) | |
| 652-837, gnl|panTro1|chr10 (47333164-47333371) | |
| 652-837, gnl|rheMac2|chr11 (44736896-44737106) | |
| 652-837, gnl|rn3|chr7 (136463697-136463911) | |
| 936-1036, gnl|bosTau2|chr5 (24601880-24601780) | |
| 936-1036, gnl|Hg17|chr12 (46347130-46347030) | |
| 936-1036, gnl|Mm7|chr15 (97679061-97678961) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| ret (0.3862) | |
| fco (0.314416) | |
| tbr (0.308356) | |
| tra (0.246184) | |
| gul (0.177588) | |
| lin (0.145603) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| thg (0.126791) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (0.3862) | |
| fco (0.314416) | |
| tbr (0.308356) | |
| tra (0.246184) | |
| gul (0.177588) | |
| lin (0.145603) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| thg (0.126791) | |
| spc (0.113366) | |
| ldo (0.0970026) |