Non-Coding RNA Search

Ss1.1-Pig4-TMW8055O12.5

Sequence:


               
               TAGTTACCACGTCAGTGAGCTGACAGGGAAGGCAGCCGGCTCCACCGCCCGTTCCGGTCG
ACTCTTCCCGACCAACTGTGCGGCTCTTGATTTCAGCGTCAACTCCCAGGAAACGAGCAC
CTTCCCTGCTCGCATCTGCCACCAGAGCCGGTAGAGCAGCTGGGAGACGCCTTCGGGGCC
TGGGCTGGACATGAGCAGCGGCTGCCGGTCCTGGGACTAGGCCCCGCCATTTTGGATCCG
CTGACAGGTTTGCCAGGATGGTGGATAAAAATATTTACATCATTCAAGGGGAAATTAACA
TTGTGGTTGGGGCCATCAAACGAAATGCCCGATGGAGCACCCATACTCCACTGGATGAAG
AACGAGATCCTCTACTGCATAGTTTCAGTCATCTAAAGGAGGTTTTAAACAATGTAACAG
CATATGGAACTTCCCAGCGAGGGATCAGATTCCAGCCTCAGTTTCGACCTATGCCACTCA
CAGCTGCGGCAACACCAGCTGCTTAACCCACTGTGCTGGCCAGGGATCCAGCCTGTACTC
CAGCACTGCAGAGACACCACCAGCAGCCAATCCCATTGTGCCACAACAGGAACTCCTGCT
GTTACTTATTTTTAAATTAAATTTATTTTAATTCTCTCTAACACCCATTTTATAAGTGAT
AAAATACAGGCTTAGAAAAGTTAAGCATCACAGTATGTTTCAAAGTAAATTGCAAAACTG
GAATTTGAACCTATGCCCATGTTTTTAACCTAGAACCTTCAACTTCTAATCTTGGTCCCA
ACATTAACTGGCTTTATGGCATTGTACAAATTACTTAACTTCCCTAAATCTTAATTACAT
TATTTGTAAATTGTTTTAGAACTTATTTTAGTTATAATACTCTAGAATTTGGAGGATGTT
CTGGAATGGCTAGTTGAAAATCAGGCTTATTTCTATAGAGTGCTATTACTCAAGGTATAA
TCTGTAAATTATTTCTGGTACACAAACTGCTATTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGTTACCACGTCAGTGAGCTGACAGGGAAGGCAGCCGGCTCCACCGCCCGTTCCGGTCG
ACTCTTCCCGACCAACTGTGCGGCTCTTGATTTCAGCGTCAACTCCCAGGAAACGAGCAC
CTTCCCTGCTCGCATCTGCCACCAGAGCCGGTAGAGCAGCTGGGAGACGCCTTCGGGGCC
TGGGCTGGACATGAGCAGCGGCTGCCGGTCCTGGGACTAGGCCCCGCCATTTTGGATCCG
CTGACAGGTTTGCCAGGATGGTGGATAAAAATATTTACATCATTCAAGGGGAAATTAACA
TTGTGGTTGGGGCCATCAAACGAAATGCCCGATGGAGCACCCATACTCCACTGGATGAAG
AACGAGATCCTCTACTGCATAGTTTCAGTCATCTAAAGGAGGTTTTAAACAATGTAACAG
CATATGGAACTTCCCAGCGAGGGATCAGATTCCAGCCTCAGTTTCGACCTATGCCACTCA
CAGCTGCGGCAACACCAGCTGCTTAACCCACTGTGCTGGCCAGGGATCCAGCCTGTACTC
CAGCACTGCAGAGACACCACCAGCAGCCAATCCCATTGTGCCACAACAGGAACTCCTGCT
GTTACTTATTTTTAAATTAAATTTATTTTAATTCTCTCTAACACCCATTTTATAAGTGAT
AAAATACAGGCTTAGAAAAGTTAAGCATCACAGTATGTTTCAAAGTAAATTGCAAAACTG
GAATTTGAACCTATGCCCATGTTTTTAACCTAGAACCTTCAACTTCTAATCTTGGTCCCA
ACATTAACTGGCTTTATGGCATTGTACAAATTACTTAACTTCCCTAAATCTTAATTACAT
TATTTGTAAATTGTTTTAGAACTTATTTTAGTTATAATACTCTAGAATTTGGAGGATGTT
CTGGAATGGCTAGTTGAAAATCAGGCTTATTTCTATAGAGTGCTATTACTCAAGGTATAA
TCTGTAAATTATTTCTGGTACACAAACTGCTATTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47212159|emb|CAF92102.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47212159|emb|CAF92102.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-155, - strand, RNAz p=0.745895

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-155, - strand, RNAz p=0.745895

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-249, gnl|bosTau2|chr26 (15381069-15381315)
               

               
               1-249, gnl|canFam2|chr28 (17775564-17776636)
               

               
               1-249, gnl|dasNov1|scaffold_6919 (5903-6974)
               

               
               1-249, gnl|echTel1|scaffold_316526 (1354-2393)
               

               
               1-249, gnl|hg17|chr10 (103994883-103995952)
               

               
               1-249, gnl|Hg17|chr10 (103995278-103995530)
               

               
               1-249, gnl|loxAfr1|scaffold_13371 (20723-21796)
               

               
               1-249, gnl|mm7|chr19 (46048781-46049840)
               

               
               1-249, gnl|Mm7|chr19 (46049174-46049428)
               

               
               1-249, gnl|monDom2|scaffold_14 (61098939-61097823)
               

               
               1-249, gnl|oryCun1|scaffold_214945 (54105-53036)
               

               
               1-249, gnl|panTro1|chr8 (105750735-105751803)
               

               
               1-249, gnl|rheMac2|chr9 (101901618-101902685)
               

               
               1-249, gnl|rn3|chr1 (251633364-251634417)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-249, gnl|bosTau2|chr26 (15381069-15381315)
               

               
               1-249, gnl|canFam2|chr28 (17775564-17776636)
               

               
               1-249, gnl|dasNov1|scaffold_6919 (5903-6974)
               

               
               1-249, gnl|echTel1|scaffold_316526 (1354-2393)
               

               
               1-249, gnl|hg17|chr10 (103994883-103995952)
               

               
               1-249, gnl|Hg17|chr10 (103995278-103995530)
               

               
               1-249, gnl|loxAfr1|scaffold_13371 (20723-21796)
               

               
               1-249, gnl|mm7|chr19 (46048781-46049840)
               

               
               1-249, gnl|Mm7|chr19 (46049174-46049428)
               

               
               1-249, gnl|monDom2|scaffold_14 (61098939-61097823)
               

               
               1-249, gnl|oryCun1|scaffold_214945 (54105-53036)
               

               
               1-249, gnl|panTro1|chr8 (105750735-105751803)
               

               
               1-249, gnl|rheMac2|chr9 (101901618-101902685)
               

               
               1-249, gnl|rn3|chr1 (251633364-251634417)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               thg (0.126791)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)
               

               
               med (0.116252)

	1-249, gnl\|bosTau2\|chr26 (15381069-15381315)
	1-249, gnl\|canFam2\|chr28 (17775564-17776636)
	1-249, gnl\|dasNov1\|scaffold_6919 (5903-6974)
	1-249, gnl\|echTel1\|scaffold_316526 (1354-2393)
	1-249, gnl\|hg17\|chr10 (103994883-103995952)
	1-249, gnl\|Hg17\|chr10 (103995278-103995530)
	1-249, gnl\|loxAfr1\|scaffold_13371 (20723-21796)
	1-249, gnl\|mm7\|chr19 (46048781-46049840)
	1-249, gnl\|Mm7\|chr19 (46049174-46049428)
	1-249, gnl\|monDom2\|scaffold_14 (61098939-61097823)
	1-249, gnl\|oryCun1\|scaffold_214945 (54105-53036)
	1-249, gnl\|panTro1\|chr8 (105750735-105751803)
	1-249, gnl\|rheMac2\|chr9 (101901618-101902685)
	1-249, gnl\|rn3\|chr1 (251633364-251634417)