Ss1.1-Pig4-TMW8055O14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCAGCTGCGCGAAAGATTCGCGAGAGAGGGCGGTGGCCCAGGCCTGCTTGGCCGCGCGC CCCGCCCCTCGGAGGCCGGCTTTCCAACGCGCCCCCAAGGTCTGCAGAGCTTGCGGGTAC AGAGCGCTCCACCCACCGGCCCCGACCCGGGCCCAGCAGCCTCCCTGGACTGGACCCGTG CTGGAGGGAAAAGCCGCCTTGGGGAGGCGGGAAAGGGAACTGGAGGCGGCCACGGAAGGA TTAACCTCCATTTCAGCTAATCATGGGAGAGATTAAAGTCTCTCCTGATTATAACTGGTT TAGAAGTACAGTCCCCCTTAAAAAGATTATTGTGGATGATGACGATAGTAAGATCTGGTC GCTCTACGATGCAGGCCCCAGAAATATTAGGTGTCCTCTCATATTTCTCCCTCCCGTCAG CGGGACTGCAGATGTATTTTTCCGGCAGATTTTGGCTTTGACTGGCTGGGGTTACCGGGT TATTGCTTTGCAGTATCCAGTTTATTGGGACCATCTTGAATTCTGTGATGGATTCAGAAA ACTTTTAGACCATTTACAATTGGATAAAGTTCATCTCTTTGGGGCTTCTCTGGGAGGCTT TTTGGCCCAGAAGTTTGCTGAATACACTCACAAATCTCCCAGAGTCCAGTCCCTCATCCT CTGTAATGCCTTCAGTGACACTTCTATCTTTAATCAAACGTGGACTGCCAACAGCTTTTG GCTGATGCCATCATTTATGCTCAAAAAAATAGTTCTTGGAAATTTTTCATCTGGCCCAGT GGACCCTATGATGGCTGATGCCATTGACTTCATGGTGGACAGGCTGGAAAGTTTGGGTCA GAGTGAACTGGCTTCAAGACTTACCCTGAACTGTCAAAATTCTTATGTGGAACCTCATAA AATTCGGGACATCCCCGTAACCATTATGGATGTGTTTGACCAGAGTGCACTTTCAACTGA AGCTAAGGAAGAAATGTACAAACTGTACCCTAATGCCCGGAGGGCTCACCTTAAAACAGG AGGCAATTTCCCATACCTGTGCAGAAGTGCGGAGGTGAACCTCTATGTACAGATACATTT GCTGCAATTCCACGGAACCAAATACGCGGCCATTGACCCGTCAATGGTCAGTGCTGAGGA ACTTGAGGTGCAGAAGGGCAACCTCGGCATCAGTCAGGAGGAGCAATAGCTGGGGCTGTT AGTGATGGGTGGTCCATGTGTGCATACAATCAGTGACGTCAGCGCCTGAGAGTCGGCCTC TGGTTGGTTGGTCAGGTTCACCGGTTATCACTGTGTTTGGAACTAGGACTGATTGTCATC TTCGTGACAGGCGGCAGCTCTTCTAAGCCAGTGTAACTATTCCTTCTTCAGTTTTTTTAG CCTTTGAACTTAAAGAAGTACTTTTGAAAACTCCCATTTTAAGAATTGTGAAAATTTTGC TACCAAAAGTCTTCACCACTGTTTCTTTGAGGTTTGGGATTTTGTGGGGTTTTCTCCTTT CCTTTCCCTTCCTTCTTTCCTTTCTGTTATTTGCTGTTAATGTTGCACATCCACATTGTG TATCAAAATGACACTGGTTATTTTGATGCTTTCTTGTTTATAACCGTTATCTGAGTGCCA AGGTAGTCACCCAGTGTTTGCTCTCCTGCAAATCAATGACTTCTAATTTCAGTTCAGCGA ATTGTTTTCAGTTTTGGCTGTTGTCTTTCTACCCACTGCAGTCTTTGGAATAAAAATTCA ACTTTAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCAGCTGCGCGAAAGATTCGCGAGAGAGGGCGGTGGCCCAGGCCTGCTTGGCCGCGCGC CCCGCCCCTCGGAGGCCGGCTTTCCAACGCGCCCCCAAGGTCTGCAGAGCTTGCGGGTAC AGAGCGCTCCACCCACCGGCCCCGACCCGGGCCCAGCAGCCTCCCTGGACTGGACCCGTG CTGGAGGGAAAAGCCGCCTTGGGGAGGCGGGAAAGGGAACTGGAGGCGGCCACGGAAGGA TTAACCTCCATTTCAGCTAATCATGGGAGAGATTAAAGTCTCTCCTGATTATAACTGGTT TAGAAGTACAGTCCCCCTTAAAAAGATTATTGTGGATGATGACGATAGTAAGATCTGGTC GCTCTACGATGCAGGCCCCAGAAATATTAGGTGTCCTCTCATATTTCTCCCTCCCGTCAG CGGGACTGCAGATGTATTTTTCCGGCAGATTTTGGCTTTGACTGGCTGGGGTTACCGGGT TATTGCTTTGCAGTATCCAGTTTATTGGGACCATCTTGAATTCTGTGATGGATTCAGAAA ACTTTTAGACCATTTACAATTGGATAAAGTTCATCTCTTTGGGGCTTCTCTGGGAGGCTT TTTGGCCCAGAAGTTTGCTGAATACACTCACAAATCTCCCAGAGTCCAGTCCCTCATCCT CTGTAATGCCTTCAGTGACACTTCTATCTTTAATCAAACGTGGACTGCCAACAGCTTTTG GCTGATGCCATCATTTATGCTCAAAAAAATAGTTCTTGGAAATTTTTCATCTGGCCCAGT GGACCCTATGATGGCTGATGCCATTGACTTCATGGTGGACAGGCTGGAAAGTTTGGGTCA GAGTGAACTGGCTTCAAGACTTACCCTGAACTGTCAAAATTCTTATGTGGAACCTCATAA AATTCGGGACATCCCCGTAACCATTATGGATGTGTTTGACCAGAGTGCACTTTCAACTGA AGCTAAGGAAGAAATGTACAAACTGTACCCTAATGCCCGGAGGGCTCACCTTAAAACAGG AGGCAATTTCCCATACCTGTGCAGAAGTGCGGAGGTGAACCTCTATGTACAGATACATTT GCTGCAATTCCACGGAACCAAATACGCGGCCATTGACCCGTCAATGGTCAGTGCTGAGGA ACTTGAGGTGCAGAAGGGCAACCTCGGCATCAGTCAGGAGGAGCAATAGCTGGGGCTGTT AGTGATGGGTGGTCCATGTGTGCATACAATCAGTGACGTCAGCGCCTGAGAGTCGGCCTC TGGTTGGTTGGTCAGGTTCACCGGTTATCACTGTGTTTGGAACTAGGACTGATTGTCATC TTCGTGACAGGCGGCAGCTCTTCTAAGCCAGTGTAACTATTCCTTCTTCAGTTTTTTTAG CCTTTGAACTTAAAGAAGTACTTTTGAAAACTCCCATTTTAAGAATTGTGAAAATTTTGC TACCAAAAGTCTTCACCACTGTTTCTTTGAGGTTTGGGATTTTGTGGGGTTTTCTCCTTT CCTTTCCCTTCCTTCTTTCCTTTCTGTTATTTGCTGTTAATGTTGCACATCCACATTGTG TATCAAAATGACACTGGTTATTTTGATGCTTTCTTGTTTATAACCGTTATCTGAGTGCCA AGGTAGTCACCCAGTGTTTGCTCTCCTGCAAATCAATGACTTCTAATTTCAGTTCAGCGA ATTGTTTTCAGTTTTGGCTGTTGTCTTTCTACCCACTGCAGTCTTTGGAATAAAAATTCA ACTTTAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1070-1188, + strand, RNAz p=0.71138 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1070-1188, + strand, RNAz p=0.71138 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_016630, + |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 1-239, gnl|bosTau2|chr10 (8350009-8349768) | |
| 1-239, gnl|Hg17|chr15 (63069294-63069055) | |
| 1-239, gnl|Mm7|chr9 (65490590-65490796) | |
| 324-496, gnl|bosTau2|chr10 (8343282-8343111) | |
| 324-496, gnl|canFam2|chr30 (32367276-32367498) | |
| 324-496, gnl|danRer3|chrNA (243624535-243624328) | |
| 324-496, gnl|dasNov1|scaffold_59087 (4767-4986) | |
| 324-496, gnl|echTel1|scaffold_310815 (7417-7636) | |
| 324-496, gnl|fr1|chrUn (98152741-98152922) | |
| 324-496, gnl|galGal2|chr10 (18404121-18404317) | |
| 324-496, gnl|hg17|chr15 (63060246-63060465) | |
| 324-496, gnl|Hg17|chr15 (63060418-63060247) | |
| 324-496, gnl|loxAfr1|scaffold_13292 (36052-36273) | |
| 324-496, gnl|mm7|chr9 (65498588-65498365) | |
| 324-496, gnl|Mm7|chr9 (65498414-65498585) | |
| 324-496, gnl|monDom2|scaffold_12 (48346459-48346239) | |
| 324-496, gnl|oryCun1|scaffold_196609 (17392-17610) | |
| 324-496, gnl|panTro1|chr16 (63530603-63530822) | |
| 324-496, gnl|rheMac2|chr7 (43449527-43449746) | |
| 324-496, gnl|rn3|chr8 (69737103-69736884) | |
| 324-496, gnl|tetNig1|chrUn_random (33114654-33114474) | |
| 324-496, gnl|xenTro1|scaffold_208 (591173-590955) | |
| 564-714, gnl|bosTau2|chr10 (8336795-8336645) | |
| 564-714, gnl|Hg17|chr15 (63054143-63053993) | |
| 564-714, gnl|Mm7|chr9 (65505476-65505626) | |
| 823-933, gnl|bosTau2|chr10 (8334006-8333896) | |
| 823-933, gnl|canFam2|chr30 (32357966-32358122) | |
| 823-933, gnl|danRer3|chrNA (243630858-243630703) | |
| 823-933, gnl|dasNov1|scaffold_103434 (4023-3867) | |
| 823-933, gnl|echTel1|scaffold_231248 (2104-2268) | |
| 823-933, gnl|fr1|chrUn (98150208-98150372) | |
| 823-933, gnl|galGal2|chr10 (18401978-18402119) | |
| 823-933, gnl|hg17|chr15 (63048615-63048770) | |
| 823-933, gnl|Hg17|chr15 (63048753-63048643) | |
| 823-933, gnl|loxAfr1|scaffold_13292 (23820-23976) | |
| 823-933, gnl|mm7|chr9 (65511618-65511481) | |
| 823-933, gnl|Mm7|chr9 (65511501-65511611) | |
| 823-933, gnl|monDom2|scaffold_12 (48353437-48353278) | |
| 823-933, gnl|oryCun1|scaffold_196609 (6848-6980) | |
| 823-933, gnl|panTro1|chr16 (63518986-63519141) | |
| 823-933, gnl|rheMac2|chr7 (43438339-43438494) | |
| 823-933, gnl|rn3|chr8 (69751705-69751544) | |
| 823-933, gnl|tetNig1|chrUn_random (33116198-33116033) | |
| 823-933, gnl|xenTro1|scaffold_208 (594259-594121) | |
| 1070-1747, gnl|bosTau2|chr10 (8330488-8329812) | |
| 1070-1747, gnl|Hg17|chr15 (63043133-63042419) | |
| 1070-1747, gnl|Mm7|chr9 (65516471-65517098) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-239, gnl|bosTau2|chr10 (8350009-8349768) | |
| 1-239, gnl|Hg17|chr15 (63069294-63069055) | |
| 1-239, gnl|Mm7|chr9 (65490590-65490796) | |
| 324-496, gnl|bosTau2|chr10 (8343282-8343111) | |
| 324-496, gnl|canFam2|chr30 (32367276-32367498) | |
| 324-496, gnl|danRer3|chrNA (243624535-243624328) | |
| 324-496, gnl|dasNov1|scaffold_59087 (4767-4986) | |
| 324-496, gnl|echTel1|scaffold_310815 (7417-7636) | |
| 324-496, gnl|fr1|chrUn (98152741-98152922) | |
| 324-496, gnl|galGal2|chr10 (18404121-18404317) | |
| 324-496, gnl|hg17|chr15 (63060246-63060465) | |
| 324-496, gnl|Hg17|chr15 (63060418-63060247) | |
| 324-496, gnl|loxAfr1|scaffold_13292 (36052-36273) | |
| 324-496, gnl|mm7|chr9 (65498588-65498365) | |
| 324-496, gnl|Mm7|chr9 (65498414-65498585) | |
| 324-496, gnl|monDom2|scaffold_12 (48346459-48346239) | |
| 324-496, gnl|oryCun1|scaffold_196609 (17392-17610) | |
| 324-496, gnl|panTro1|chr16 (63530603-63530822) | |
| 324-496, gnl|rheMac2|chr7 (43449527-43449746) | |
| 324-496, gnl|rn3|chr8 (69737103-69736884) | |
| 324-496, gnl|tetNig1|chrUn_random (33114654-33114474) | |
| 324-496, gnl|xenTro1|scaffold_208 (591173-590955) | |
| 564-714, gnl|bosTau2|chr10 (8336795-8336645) | |
| 564-714, gnl|Hg17|chr15 (63054143-63053993) | |
| 564-714, gnl|Mm7|chr9 (65505476-65505626) | |
| 823-933, gnl|bosTau2|chr10 (8334006-8333896) | |
| 823-933, gnl|canFam2|chr30 (32357966-32358122) | |
| 823-933, gnl|danRer3|chrNA (243630858-243630703) | |
| 823-933, gnl|dasNov1|scaffold_103434 (4023-3867) | |
| 823-933, gnl|echTel1|scaffold_231248 (2104-2268) | |
| 823-933, gnl|fr1|chrUn (98150208-98150372) | |
| 823-933, gnl|galGal2|chr10 (18401978-18402119) | |
| 823-933, gnl|hg17|chr15 (63048615-63048770) | |
| 823-933, gnl|Hg17|chr15 (63048753-63048643) | |
| 823-933, gnl|loxAfr1|scaffold_13292 (23820-23976) | |
| 823-933, gnl|mm7|chr9 (65511618-65511481) | |
| 823-933, gnl|Mm7|chr9 (65511501-65511611) | |
| 823-933, gnl|monDom2|scaffold_12 (48353437-48353278) | |
| 823-933, gnl|oryCun1|scaffold_196609 (6848-6980) | |
| 823-933, gnl|panTro1|chr16 (63518986-63519141) | |
| 823-933, gnl|rheMac2|chr7 (43438339-43438494) | |
| 823-933, gnl|rn3|chr8 (69751705-69751544) | |
| 823-933, gnl|tetNig1|chrUn_random (33116198-33116033) | |
| 823-933, gnl|xenTro1|scaffold_208 (594259-594121) | |
| 1070-1747, gnl|bosTau2|chr10 (8330488-8329812) | |
| 1070-1747, gnl|Hg17|chr15 (63043133-63042419) | |
| 1070-1747, gnl|Mm7|chr9 (65516471-65517098) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| pro (0.512033) | |
| mcp (0.511945) | |
| nep (0.36785) | |
| sin (0.349895) | |
| nje (0.33184) | |
| cty (0.31224) | |
| eru (0.240096) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| cbl (0.229595) | |
| spc (0.226732) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| ski (0.146735) | |
| spl (0.143184) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| kid (0.129735) | |
| bla (0.124347) | |
| clu (0.119646) | |
| med (0.116252) | |
| jca (0.11396) | |
| ldo (0.0970026) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| mcp (0.511945) | |
| nep (0.36785) | |
| sin (0.349895) | |
| nje (0.33184) | |
| cty (0.31224) | |
| eru (0.240096) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| cbl (0.229595) | |
| spc (0.226732) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| ski (0.146735) | |
| spl (0.143184) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| kid (0.129735) | |
| bla (0.124347) | |
| clu (0.119646) | |
| med (0.116252) | |
| jca (0.11396) | |
| ldo (0.0970026) |