Non-Coding RNA Search

Ss1.1-Pig4-TMW8055P12.3

Sequence:


               
               TCCCGCGCTGTGAGCCCCTCGTGGCAGCTCCGCACGCGGGGACAGACACAGAGGGGCTTC
GACGCGGCGCCATCAACATTCTCCTTATAAACGTGAGTGGCTTCTCCAGGCAAACTATGC
ACTATTTCATGGTCAGAATCAAAGGAAGTTTAAATGAGGGTGGAGTTAAACTGTGCTAAA
TTACAGTAGTGCTTATTAGTAACTAGATTTCAAAAGGTTACAGAAAATGTACATTCTCTA
CACAAAAACTGCATCTCCTGCACAGACAACATCGACAGCGACACGGGGAGGAAACTGATT
GTCCATTCTTTGCCCAGGAAGTCTCAGTACTTTATAGATTCGTCGTTACCTCTTTTTTGT
TGTTGTTGCTGTTGTGGTGGTTCTTCCGAAAAAGCAGTTACGTTTTTTTTTTTTTTTTTC
TCTTTTCTTTTTCTTTTTATACTAGGGACGTGGAGATGTTAAAACGACAACAAAAAATAT
ATATATAAAAACAGGAATGAAATCTGTGAGAGAATATTTCTTTTTCTTTTTATACTAGGG
ACGTGGAGATGTTAAAACGACAACAAAAAATATATATATAAAAACAGGAATGAAATCTGT
GAGAGAATATTTTTGGTTCTAAAGACGGGTGCATCCGTTTTGTCTTCGCCCGAATCCCTT
GCCGGAGGCCACACGAGCAGTGACATTGCACGGAGAGGGCAGCTTTGGGTTCCCGCCGCC
GTCACTGAAACCACCGGAAGGCGGCTCCCGTCGGAAGCATCACCTTCTCCAGAGCAGCGG
AAGGCTTCTTTTTGAGTTCCTCACATTTTCTGAATTTGCAAATCTGATGGCCAGTCTTTC
GGTTCCTACAACTGCTGCACTGCTCGCAGTTGATGCGCCGTCGGCAGGGCGCACACATGC
CGCAGCGTTTCCGCTTCTTCTTGCCCGAGCTGATGGCCGAGGCCAGCTCGCCCTGCATGG
GGTACTCGGCCAGGCCGGCCATGTGCAGCGCACTCTCGGCCAGGAACACGCCCGCCGGGG
TCATGATGAAGAGGCCTGGGTTGATGGGGAAGGCGCCCAGGTAGGGGAAGTCGGACTGGC
CATTGAGGGCCTCGGCGCCCGCCACGGCCTCCATGTCGGGCAGGCCGGCGCCCGCCTCGC
TCATCAGCGGCAGGTGCTCCTGCACCACGCGCTTGAGCATCTCCGTGGACTGCGCGAACT
GCTGCAGTGTCAGCTGTCCCTCGGCGGCCAGCTCCGTGGCCCGCTCTGCCTTGCTCAGCA
GGCTGGCCACAGCACCACTTTTGTGCTTTGAGGTAGGGTTGCTTTTGTCCACGGCCATGG
CCGCCGCCAGGTCGTGCCCGTTGGCCAACAGGGAGGCAGCGGCTGCGGCCGCCGCCGCCT
TCTCGGCAGACTCCCCGCCCAGCACGCTGCCACCGCCACTGCCGCCACTGCCCCCGAAGG
AAGAGTAGTGGGAGAGAGGGCGGGAGCGGCGCAGGCTCTTGTTGAGGGGTTCGCTGATGA
TGCCGCTCTTGTTCCGACGCTCGGGGGGTGGCGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCGCGCTGTGAGCCCCTCGTGGCAGCTCCGCACGCGGGGACAGACACAGAGGGGCTTC
GACGCGGCGCCATCAACATTCTCCTTATAAACGTGAGTGGCTTCTCCAGGCAAACTATGC
ACTATTTCATGGTCAGAATCAAAGGAAGTTTAAATGAGGGTGGAGTTAAACTGTGCTAAA
TTACAGTAGTGCTTATTAGTAACTAGATTTCAAAAGGTTACAGAAAATGTACATTCTCTA
CACAAAAACTGCATCTCCTGCACAGACAACATCGACAGCGACACGGGGAGGAAACTGATT
GTCCATTCTTTGCCCAGGAAGTCTCAGTACTTTATAGATTCGTCGTTACCTCTTTTTTGT
TGTTGTTGCTGTTGTGGTGGTTCTTCCGAAAAAGCAGTTACGTTTTTTTTTTTTTTTTTC
TCTTTTCTTTTTCTTTTTATACTAGGGACGTGGAGATGTTAAAACGACAACAAAAAATAT
ATATATAAAAACAGGAATGAAATCTGTGAGAGAATATTTCTTTTTCTTTTTATACTAGGG
ACGTGGAGATGTTAAAACGACAACAAAAAATATATATATAAAAACAGGAATGAAATCTGT
GAGAGAATATTTTTGGTTCTAAAGACGGGTGCATCCGTTTTGTCTTCGCCCGAATCCCTT
GCCGGAGGCCACACGAGCAGTGACATTGCACGGAGAGGGCAGCTTTGGGTTCCCGCCGCC
GTCACTGAAACCACCGGAAGGCGGCTCCCGTCGGAAGCATCACCTTCTCCAGAGCAGCGG
AAGGCTTCTTTTTGAGTTCCTCACATTTTCTGAATTTGCAAATCTGATGGCCAGTCTTTC
GGTTCCTACAACTGCTGCACTGCTCGCAGTTGATGCGCCGTCGGCAGGGCGCACACATGC
CGCAGCGTTTCCGCTTCTTCTTGCCCGAGCTGATGGCCGAGGCCAGCTCGCCCTGCATGG
GGTACTCGGCCAGGCCGGCCATGTGCAGCGCACTCTCGGCCAGGAACACGCCCGCCGGGG
TCATGATGAAGAGGCCTGGGTTGATGGGGAAGGCGCCCAGGTAGGGGAAGTCGGACTGGC
CATTGAGGGCCTCGGCGCCCGCCACGGCCTCCATGTCGGGCAGGCCGGCGCCCGCCTCGC
TCATCAGCGGCAGGTGCTCCTGCACCACGCGCTTGAGCATCTCCGTGGACTGCGCGAACT
GCTGCAGTGTCAGCTGTCCCTCGGCGGCCAGCTCCGTGGCCCGCTCTGCCTTGCTCAGCA
GGCTGGCCACAGCACCACTTTTGTGCTTTGAGGTAGGGTTGCTTTTGTCCACGGCCATGG
CCGCCGCCAGGTCGTGCCCGTTGGCCAACAGGGAGGCAGCGGCTGCGGCCGCCGCCGCCT
TCTCGGCAGACTCCCCGCCCAGCACGCTGCCACCGCCACTGCCGCCACTGCCCCCGAAGG
AAGAGTAGTGGGAGAGAGGGCGGGAGCGGCGCAGGCTCTTGTTGAGGGGTTCGCTGATGA
TGCCGCTCTTGTTCCGACGCTCGGGGGGTGGCGCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9NV51_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NV51_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               154-272, - strand, RNAz p=0.954826
               

               
               806-1005, - strand, RNAz p=0.65776
               

               
               1086-1405, - strand, RNAz p=0.898111

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-272, - strand, RNAz p=0.954826
               

               
               806-1005, - strand, RNAz p=0.65776
               

               
               1086-1405, - strand, RNAz p=0.898111

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of NM_016463, -
               

               
               5' of NM_016463, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_016463, -
               

               
               5' of NM_016463, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-527, gnl|bosTau2|chr7 (29960075-29960584)
               

               
               1-527, gnl|Hg17|chr5 (139043276-139042776)
               

               
               1-527, gnl|Mm7|chr18 (36237420-36236903)
               


               
               767-1534, gnl|bosTau2|chr7 (29962256-29963017)
               

               
               767-1534, gnl|Hg17|chr5 (139041216-139040449)
               

               
               767-1534, gnl|Mm7|chr18 (36235557-36234802)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-527, gnl|bosTau2|chr7 (29960075-29960584)
               

               
               1-527, gnl|Hg17|chr5 (139043276-139042776)
               

               
               1-527, gnl|Mm7|chr18 (36237420-36236903)
               


               
               767-1534, gnl|bosTau2|chr7 (29962256-29963017)
               

               
               767-1534, gnl|Hg17|chr5 (139041216-139040449)
               

               
               767-1534, gnl|Mm7|chr18 (36235557-36234802)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               spl (0.286369)
               

               
               pla (0.267344)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               cli (0.152812)
               

               
               hlv (0.139256)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               pla (0.267344)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               cli (0.152812)
               

               
               hlv (0.139256)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	154-272, - strand, RNAz p=0.954826
	806-1005, - strand, RNAz p=0.65776
	1086-1405, - strand, RNAz p=0.898111

	1-527, gnl\|bosTau2\|chr7 (29960075-29960584)
	1-527, gnl\|Hg17\|chr5 (139043276-139042776)
	1-527, gnl\|Mm7\|chr18 (36237420-36236903)

	767-1534, gnl\|bosTau2\|chr7 (29962256-29963017)
	767-1534, gnl\|Hg17\|chr5 (139041216-139040449)
	767-1534, gnl\|Mm7\|chr18 (36235557-36234802)

	spl (0.286369)
	pla (0.267344)
	tes (0.207814)
	fcc (0.197785)
	eje (0.197668)
	cli (0.152812)
	hlv (0.139256)
	eep (0.122564)
	eru (0.120048)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)
	spc (0.113366)