Ss1.1-Pig4-TMW8055P16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCAAAGCCAGAGCCAGAGCAAGTGATAAAAAACTATACTGAAGAGCTGAAGGTGGCCCC GGATGAGGACTGCATCATCTGTATGGAGAAGCTCTCTGTGGCATCTGGGTACAGCGACGT GACTGACAGCAAGACCATCGGGCCCATGGCCGTGGGCCGCCTGGCCAAGTGCAGCCATGC CTTCCACTTGCTCTGCCTGCTGGCCATGTACTGCAATGGGAACAAGGATGGAAGCTTGCA GTGTCCTTCCTGCAAAACCATCTACGGGGAGAAAACTGGGACCCAGCCCCGGGGGAAGAT GGAAGTGTTCACGTTCCAGGTGTCCCTCCCTGGCCACGAGGACTGCGGGACGATACTCAT CGTGTACAACATTCCCCACGGCATTCAGGGCCCGGAGCACCCCAACCCTGGAAAGCCGTT CACCGCTAGAGGGTTTCCCCGCCAGTGCTACCTTCCAGACAACGCCCAGGGCCGCAAGGT CCTGGAGCTGCTGAAGGTGGCCTGGAAGAGGCGACTTATCTTCACCATAGGGACGTCCAG CACCACGGGCGAGACGGATACGGTGGTGTGGAACGAGATTCACCACAAGACAGAGATGGA CCGCAATGTGACGGGCCACGGCTACCCCGACCCCAACTACCTGCAGAACGTGCTGGCCGA GCTGGCCGCCCAGGGGGTGACCGAGGACTGCCTGGAGCAGCAGTGACCGTGGCCTTGGCT GGCCTGTCTCTGCCCCCACGCGGGCCGCCCCTGGGACGGGCAGATGGGAAGGTGCCTTTC CTCAGAAGCTGGAGTATGCGTGGGGGCACAGGTGTGCTTCACGTGGAGCCTGGGCTTCTC CTGCCTGCCCCCCCCCCTCCCCGCCAGGCCCGGGTGTGCGTGGGACTTGGGGGCGAGCCT GGGAGTTGTATTTGTGGGGGCTTAGGATGCAGCTACCTCAGTGCATGGGCCCCTCCGTCC TCGGCGGGCTGTGTTGGGCCCTCCGTGCCGGGGGCCTGGCAGGGGGTGAGAAGAGACGTC CTCGCCCCTAGCCAGGGCAGGCCGGGGTCTGGGTGAGCTTCTCATACCTCAGATGTTCAG TTTGCAATAAATGCCCTACAGCCAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCAAAGCCAGAGCCAGAGCAAGTGATAAAAAACTATACTGAAGAGCTGAAGGTGGCCCC GGATGAGGACTGCATCATCTGTATGGAGAAGCTCTCTGTGGCATCTGGGTACAGCGACGT GACTGACAGCAAGACCATCGGGCCCATGGCCGTGGGCCGCCTGGCCAAGTGCAGCCATGC CTTCCACTTGCTCTGCCTGCTGGCCATGTACTGCAATGGGAACAAGGATGGAAGCTTGCA GTGTCCTTCCTGCAAAACCATCTACGGGGAGAAAACTGGGACCCAGCCCCGGGGGAAGAT GGAAGTGTTCACGTTCCAGGTGTCCCTCCCTGGCCACGAGGACTGCGGGACGATACTCAT CGTGTACAACATTCCCCACGGCATTCAGGGCCCGGAGCACCCCAACCCTGGAAAGCCGTT CACCGCTAGAGGGTTTCCCCGCCAGTGCTACCTTCCAGACAACGCCCAGGGCCGCAAGGT CCTGGAGCTGCTGAAGGTGGCCTGGAAGAGGCGACTTATCTTCACCATAGGGACGTCCAG CACCACGGGCGAGACGGATACGGTGGTGTGGAACGAGATTCACCACAAGACAGAGATGGA CCGCAATGTGACGGGCCACGGCTACCCCGACCCCAACTACCTGCAGAACGTGCTGGCCGA GCTGGCCGCCCAGGGGGTGACCGAGGACTGCCTGGAGCAGCAGTGACCGTGGCCTTGGCT GGCCTGTCTCTGCCCCCACGCGGGCCGCCCCTGGGACGGGCAGATGGGAAGGTGCCTTTC CTCAGAAGCTGGAGTATGCGTGGGGGCACAGGTGTGCTTCACGTGGAGCCTGGGCTTCTC CTGCCTGCCCCCCCCCCTCCCCGCCAGGCCCGGGTGTGCGTGGGACTTGGGGGCGAGCCT GGGAGTTGTATTTGTGGGGGCTTAGGATGCAGCTACCTCAGTGCATGGGCCCCTCCGTCC TCGGCGGGCTGTGTTGGGCCCTCCGTGCCGGGGGCCTGGCAGGGGGTGAGAAGAGACGTC CTCGCCCCTAGCCAGGGCAGGCCGGGGTCTGGGTGAGCTTCTCATACCTCAGATGTTCAG TTTGCAATAAATGCCCTACAGCCAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 225-343, + strand, RNAz p=0.556495 | |
| 225-343, - strand, RNAz p=0.556495 | |
| 225-340, + strand, RNAz p=0.762142 | |
| 225-340, - strand, RNAz p=0.762142 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 225-343, + strand, RNAz p=0.556495 | |
| 225-343, - strand, RNAz p=0.556495 | |
| 225-340, + strand, RNAz p=0.762142 | |
| 225-340, - strand, RNAz p=0.762142 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 225-389, gnl|bosTau2|chr15 (52342580-52342416) | |
| 225-389, gnl|canFam2|chr18 (40609299-40609113) | |
| 225-389, gnl|danRer3|chr7 (8157670-8157842) | |
| 225-389, gnl|echTel1|scaffold_188870 (10534-10360) | |
| 225-389, gnl|fr1|chrUn (11832065-11831884) | |
| 225-389, gnl|galGal2|chrUn (94656443-94656239) | |
| 225-389, gnl|hg17|chr11 (58719252-58719448) | |
| 225-389, gnl|Hg17|chr11 (58719255-58719419) | |
| 225-389, gnl|loxAfr1|scaffold_87910 (1443-1623) | |
| 225-389, gnl|mm7|chr19 (12158417-12158231) | |
| 225-389, gnl|Mm7|chr19 (12158412-12158248) | |
| 225-389, gnl|monDom2|scaffold_33 (23088706-23088914) | |
| 225-389, gnl|oryCun1|scaffold_173761 (65312-65498) | |
| 225-389, gnl|panTro1|chr9 (59614816-59615012) | |
| 225-389, gnl|rheMac2|chr14 (14612718-14612522) | |
| 225-389, gnl|rn3|chr1 (215563485-215563299) | |
| 225-389, gnl|tetNig1|chrUn_random (126060805-126060981) | |
| 225-389, gnl|xenTro1|scaffold_207 (256324-256140) | |
| 477-691, gnl|bosTau2|chr15 (52328159-52327945) | |
| 477-691, gnl|Hg17|chr11 (58728723-58728937) | |
| 477-691, gnl|Mm7|chr19 (12149834-12149620) | |
| 811-1106, gnl|bosTau2|chr25 (31190742-31190449) | |
| 811-1106, gnl|Hg17|chr7 (75779618-75779959) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 225-389, gnl|bosTau2|chr15 (52342580-52342416) | |
| 225-389, gnl|canFam2|chr18 (40609299-40609113) | |
| 225-389, gnl|danRer3|chr7 (8157670-8157842) | |
| 225-389, gnl|echTel1|scaffold_188870 (10534-10360) | |
| 225-389, gnl|fr1|chrUn (11832065-11831884) | |
| 225-389, gnl|galGal2|chrUn (94656443-94656239) | |
| 225-389, gnl|hg17|chr11 (58719252-58719448) | |
| 225-389, gnl|Hg17|chr11 (58719255-58719419) | |
| 225-389, gnl|loxAfr1|scaffold_87910 (1443-1623) | |
| 225-389, gnl|mm7|chr19 (12158417-12158231) | |
| 225-389, gnl|Mm7|chr19 (12158412-12158248) | |
| 225-389, gnl|monDom2|scaffold_33 (23088706-23088914) | |
| 225-389, gnl|oryCun1|scaffold_173761 (65312-65498) | |
| 225-389, gnl|panTro1|chr9 (59614816-59615012) | |
| 225-389, gnl|rheMac2|chr14 (14612718-14612522) | |
| 225-389, gnl|rn3|chr1 (215563485-215563299) | |
| 225-389, gnl|tetNig1|chrUn_random (126060805-126060981) | |
| 225-389, gnl|xenTro1|scaffold_207 (256324-256140) | |
| 477-691, gnl|bosTau2|chr15 (52328159-52327945) | |
| 477-691, gnl|Hg17|chr11 (58728723-58728937) | |
| 477-691, gnl|Mm7|chr19 (12149834-12149620) | |
| 811-1106, gnl|bosTau2|chr25 (31190742-31190449) | |
| 811-1106, gnl|Hg17|chr7 (75779618-75779959) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.161186) | |
| cly (0.120642) | |
| cty (0.10408) |