Non-Coding RNA Search

Ss1.1-Pig4-TMW8055P17.3

Sequence:


               
               ACAGTCCAGACTAGCAGCAAGAAAATATGCCAGAGTTGTACAGAAGTTGGGTTTTCCAGC
TAAATTCTTGGACTTCAAGATTCAGAACATGGTGGGGAGCTGTGATGTGAAGTTCCCTAT
AAGGTTAGAAGGCCTTGTGCTTACCCACCAACAGTTCAGTAGTTATGAGCCAGAGTTGTT
TCCTGGTTTAATCTACAGAATGATCAAACCGAGAATTGTTCTCCTTATTTTTGTCTCTGG
AAAAGTTGTATTAACAGGTGCTAAAGTCAGAGCAGAAATTTACGAAGCGTTTGAGAACAT
CTACCCTATCCTAAAGGGTTTCAGGAAGACGACGTAATGGCCGTCATGTACTCCTGCCTC
CCCCACCACTTGTTTTTTTTAGAAGAAATCAGTTTTTGGTACATTTAATGGTGGTGTTGT
GGACGGCCCTGTGTGGTGCAAGGATGGACGTTCGGTTTAGGTTGCAGCACCAGGTGAAGC
TCCTGCACGCGAACCCCACAGGGGTGCCGCAGTTTCTGCACAGAGAACTCCAGAGCGTTC
CTGTAAGTTGCTCGTACTGTGCTGCTATTCGGGCAGCGCTGCCCGGTTATTTATATTTAG
ATTTTAAACACTTACTGCTGTTGACAAGTTGGTTTAAGGGACAAAACTTTAAGTGTTAAA
GCCACCTCAACAATTGATTGGACTTTTTCGTTTAATTTCTTCCCCATAAACCACATTTTT
TATATTTCTACCAGAAAAGTAAAAATCTTTTTTAAAAGTATTGTTTTCTAATTTGTAACT
CCCAGGGGTTATTTTTGTGCCAGACACATTCCGCGTTTTCAGTATTGCAGGACAGAATAG
AAATGTATTAATGAAAACAAATGGCTGTACATATTTTTCTTCCTTCAGAGTACTCTGTAC
AATAAATGCTGTTTATAAAAGTGTTAGATGTTATAAATGAAACCTTGTAAGATTCATGTG
ATCATACTGTTTAAAAAAGTTGTATTTTAGATATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGTCCAGACTAGCAGCAAGAAAATATGCCAGAGTTGTACAGAAGTTGGGTTTTCCAGC
TAAATTCTTGGACTTCAAGATTCAGAACATGGTGGGGAGCTGTGATGTGAAGTTCCCTAT
AAGGTTAGAAGGCCTTGTGCTTACCCACCAACAGTTCAGTAGTTATGAGCCAGAGTTGTT
TCCTGGTTTAATCTACAGAATGATCAAACCGAGAATTGTTCTCCTTATTTTTGTCTCTGG
AAAAGTTGTATTAACAGGTGCTAAAGTCAGAGCAGAAATTTACGAAGCGTTTGAGAACAT
CTACCCTATCCTAAAGGGTTTCAGGAAGACGACGTAATGGCCGTCATGTACTCCTGCCTC
CCCCACCACTTGTTTTTTTTAGAAGAAATCAGTTTTTGGTACATTTAATGGTGGTGTTGT
GGACGGCCCTGTGTGGTGCAAGGATGGACGTTCGGTTTAGGTTGCAGCACCAGGTGAAGC
TCCTGCACGCGAACCCCACAGGGGTGCCGCAGTTTCTGCACAGAGAACTCCAGAGCGTTC
CTGTAAGTTGCTCGTACTGTGCTGCTATTCGGGCAGCGCTGCCCGGTTATTTATATTTAG
ATTTTAAACACTTACTGCTGTTGACAAGTTGGTTTAAGGGACAAAACTTTAAGTGTTAAA
GCCACCTCAACAATTGATTGGACTTTTTCGTTTAATTTCTTCCCCATAAACCACATTTTT
TATATTTCTACCAGAAAAGTAAAAATCTTTTTTAAAAGTATTGTTTTCTAATTTGTAACT
CCCAGGGGTTATTTTTGTGCCAGACACATTCCGCGTTTTCAGTATTGCAGGACAGAATAG
AAATGTATTAATGAAAACAAATGGCTGTACATATTTTTCTTCCTTCAGAGTACTCTGTAC
AATAAATGCTGTTTATAAAAGTGTTAGATGTTATAAATGAAACCTTGTAAGATTCATGTG
ATCATACTGTTTAAAAAAGTTGTATTTTAGATATAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38492542|pdb|1NVP|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38492542|pdb|1NVP|A

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-622, gnl|bosTau2|chr11 (35619770-35619140)
               

               
               1-622, gnl|Hg17|chr6 (170796338-170799263)
               

               
               1-622, gnl|Mm7|chr17 (13751130-13753932)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-622, gnl|bosTau2|chr11 (35619770-35619140)
               

               
               1-622, gnl|Hg17|chr6 (170796338-170799263)
               

               
               1-622, gnl|Mm7|chr17 (13751130-13753932)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fty (0.351679)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               spl (0.143184)
               

               
               pgl (0.118483)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               spl (0.143184)
               

               
               pgl (0.118483)

	1-622, gnl\|bosTau2\|chr11 (35619770-35619140)
	1-622, gnl\|Hg17\|chr6 (170796338-170799263)
	1-622, gnl\|Mm7\|chr17 (13751130-13753932)

	fty (0.351679)
	aor (0.195274)
	sag (0.182715)
	sin (0.174948)
	cje (0.165235)
	spl (0.143184)
	pgl (0.118483)