Non-Coding RNA Search

Ss1.1-Pig4-TMW8055P22.3

Sequence:


               
               TGGGGGGGTGGCGGGTCTTCACTCGTAGGCATTTGGGGGATCTGAGGGTGGGCCGAGGCA
TTTCTTAGAGGATGATCAATAGACCCTAACTGGGCACCGAGAAAACCAAGATACACATCC
AAGTGACATCGTGCAAGGGGGCAAGACTTAAATGTGACGAAACGATTGGCCTTTAGGGAG
ACTTGCTGGACCACGGCTACAGCCTCTGGGTAATGACGGACACGATTAGTGAAGCCGAGG
CGTGTTGGGGCTGGTGCTGGGCCATTGCGATGGAACTTCCCGTCCACAGAGAGGGACTTG
TTCTGTCAAGATTTCTTCTTGTGTCTTTGACCCTTGAAAACTAGAGCTGTGCAGTTGATT
TCTTTTCTTCCTGGCTTTTTTTGACCACCCTGCTCCCATCACTGTCCTCCACACAAAGGA
GGGACAGATAAAAGAGTGGCCATCCTTCTCTTCTTGGCCACCTTCCCAAGGCCTTAAGCT
TTGGATTCAAGGGGCACTGCATGGAGACAACATTTCAGTTGAGAATGAAAACTGCAACTT
TTAACCAAACCATTATTGAAAGCAATGCTGATGAATCACTGTTTTTAGACACCTTAGTTT
TGAGGGGAGGCGTTCCACAGATTGTTTCTATACAAATGTAAATCCTAAAAAAGTTGTTCA
ACTATTTTATTATCTTAGATTATATCAAAGTATTTGGTGTGTGTAGTGAAAAAAAAAACC
TGCCAACAATAAAAATGACTGACTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGGGGTGGCGGGTCTTCACTCGTAGGCATTTGGGGGATCTGAGGGTGGGCCGAGGCA
TTTCTTAGAGGATGATCAATAGACCCTAACTGGGCACCGAGAAAACCAAGATACACATCC
AAGTGACATCGTGCAAGGGGGCAAGACTTAAATGTGACGAAACGATTGGCCTTTAGGGAG
ACTTGCTGGACCACGGCTACAGCCTCTGGGTAATGACGGACACGATTAGTGAAGCCGAGG
CGTGTTGGGGCTGGTGCTGGGCCATTGCGATGGAACTTCCCGTCCACAGAGAGGGACTTG
TTCTGTCAAGATTTCTTCTTGTGTCTTTGACCCTTGAAAACTAGAGCTGTGCAGTTGATT
TCTTTTCTTCCTGGCTTTTTTTGACCACCCTGCTCCCATCACTGTCCTCCACACAAAGGA
GGGACAGATAAAAGAGTGGCCATCCTTCTCTTCTTGGCCACCTTCCCAAGGCCTTAAGCT
TTGGATTCAAGGGGCACTGCATGGAGACAACATTTCAGTTGAGAATGAAAACTGCAACTT
TTAACCAAACCATTATTGAAAGCAATGCTGATGAATCACTGTTTTTAGACACCTTAGTTT
TGAGGGGAGGCGTTCCACAGATTGTTTCTATACAAATGTAAATCCTAAAAAAGTTGTTCA
ACTATTTTATTATCTTAGATTATATCAAAGTATTTGGTGTGTGTAGTGAAAAAAAAAACC
TGCCAACAATAAAAATGACTGACTAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               359-501, + strand, RNAz p=0.999866

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               359-501, + strand, RNAz p=0.999866

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               400-501, AM008985 KN-252-bone-marrow, Bos taurus Bos taurus cDNA clone 
(emb|AM008985.1|), blast E-value=3e-21, identity=89.32% 
               

               
               400-501, AM038620 KN-252-spleen, Bos indicus Bos indicus cDNA clone 
(emb|AM038620.1|), blast E-value=3e-21, identity=89.32% 
               

               
               400-501, 1460758 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT898267.1|), 
blast E-value=3e-21, identity=89.32% 
               

               
               400-501, HW_Fat_6_C09 Bos taurus CF-24-HW fat cDNA library Bos taurus cDNA, 
(gb|DV780838.1|), blast E-value=3e-21, identity=89.32% 
               

               
               400-501, 1593133 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY460620.1|), 
blast E-value=3e-21, identity=89.32% 
               

               
               400-501, 1596285 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY461797.1|), 
blast E-value=3e-21, identity=89.32%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               400-501, AM008985 KN-252-bone-marrow, Bos taurus Bos taurus cDNA clone 
(emb|AM008985.1|), blast E-value=3e-21, identity=89.32% 
               

               
               400-501, AM038620 KN-252-spleen, Bos indicus Bos indicus cDNA clone 
(emb|AM038620.1|), blast E-value=3e-21, identity=89.32% 
               

               
               400-501, 1460758 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT898267.1|), 
blast E-value=3e-21, identity=89.32% 
               

               
               400-501, HW_Fat_6_C09 Bos taurus CF-24-HW fat cDNA library Bos taurus cDNA, 
(gb|DV780838.1|), blast E-value=3e-21, identity=89.32% 
               

               
               400-501, 1593133 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY460620.1|), 
blast E-value=3e-21, identity=89.32% 
               

               
               400-501, 1596285 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY461797.1|), 
blast E-value=3e-21, identity=89.32%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005574, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005574, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-748, gnl|bosTau2|chr15 (38731393-38730666)
               

               
               13-748, gnl|Hg17|chr11 (33837422-33836698)
               

               
               13-748, gnl|Mm7|chr2 (103831936-103832661)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-748, gnl|bosTau2|chr15 (38731393-38730666)
               

               
               13-748, gnl|Hg17|chr11 (33837422-33836698)
               

               
               13-748, gnl|Mm7|chr2 (103831936-103832661)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               pro (1.02407)
               

               
               che (0.272628)
               

               
               ova (0.258264)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.02407)
               

               
               che (0.272628)
               

               
               ova (0.258264)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	400-501, AM008985 KN-252-bone-marrow, Bos taurus Bos taurus cDNA clone (emb\|AM008985.1\|), blast E-value=3e-21, identity=89.32%
	400-501, AM038620 KN-252-spleen, Bos indicus Bos indicus cDNA clone (emb\|AM038620.1\|), blast E-value=3e-21, identity=89.32%
	400-501, 1460758 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DT898267.1\|), blast E-value=3e-21, identity=89.32%
	400-501, HW_Fat_6_C09 Bos taurus CF-24-HW fat cDNA library Bos taurus cDNA, (gb\|DV780838.1\|), blast E-value=3e-21, identity=89.32%
	400-501, 1593133 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb\|DY460620.1\|), blast E-value=3e-21, identity=89.32%
	400-501, 1596285 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb\|DY461797.1\|), blast E-value=3e-21, identity=89.32%

	13-748, gnl\|bosTau2\|chr15 (38731393-38730666)
	13-748, gnl\|Hg17\|chr11 (33837422-33836698)
	13-748, gnl\|Mm7\|chr2 (103831936-103832661)

	pro (1.02407)
	che (0.272628)
	ova (0.258264)
	cmu (0.186393)
	ton (0.1755)
	fbs (0.175346)
	fhi (0.169578)
	cst (0.140036)
	ssp (0.13552)
	pla (0.133672)
	kid (0.129735)
	sug (0.127291)
	ecc (0.115035)
	spc (0.113366)
	nbm (0.0993246)
	ldo (0.0970026)