Non-Coding RNA Search

Ss1.1-Pig4-TMW8056A01.5

Sequence:


               
               AGTTCGCCTCCGGGAGCTTGATAGTTGTGTGGGTTTGGTCTAAGTTTAACTCCCGGGGAC
TATGCGCTCCGGTGCAGCCGGCAGGGCCTGCCAGAGAGTCTGCAGGTGCTTTTTTTCTGG
GTTTGGGACTCGAGTAGATGGGGGGCAGCCGGAGTACTTGAGAGAAAACGGCTCCGGTTC
CCTCGTAGGGCTTGCGGAGCCCCACGGTAGCGAGCGGAGAGAAGCTCCTGAGTCTAGTGA
TGAGGGGAGCGAGGTGCTGATAGAGATCTGTCAGAAAAGGCGTTTTCTCAGTGGCACCAA
GCGGAAGCTTAGCCGAGATTCTCTTCTCAGCGGGTGCCACCCCGGCTTTGGCCCCTTGGG
CATAGAGTTGCGGAAGAACCTGGCGGCAGAATGGTGGTCTTCGGTGGTGGTGTTCAGGGA
GCAGGTCTTCCCGGTAGACGCCCTCCACCATGAACCGGGGCCTTCGCTGCCTGGGGACAG
TGCCTTCAGGTGCCTTGGAGCATTATGTTAATTACCTGGATCTGATGAATAAGAGGCTAC
CTTTTGGCCTTGCTCAGATTGGAGTGTGTTTTCATCCTGTTTCTGACACTAAACAGACAT
CTGATGCTGTTAAAAGCCAAAGAATCGGTGAAAAGACTGAAGCTTCACTGGTGTGGTTTA
CTTCATCAAGAACTGCAAGCCAGTGGCTTGATTTCTGGCTACGTCATCGACTCCTGTGGT
GGAGAAAGTTTGCCATGAGTCCATCTAACTTCAGCAGCAGTGATTGTCAGGATGAAGCAG
GCCGGAAGGGAAACAAACTTTACTACAATTTTCCCTGGGGAAAGGAGCCAATAGAAACCC
TGTGGAATCTAGGAGATCAAGAACTTTTACATAAGTATCCAGAAAATGTGGCTCAATTGC
ACGGTCGAGATGGACGAAAAAATGTGGTTCCTTCTGTTTTATCTATAAACGGAGATCTAG
ACCAAGGCATGCTGGCATACCTCTATGATTCCTTCCAGCTAACGGAGAACTCCTTCACAA
GAAAGAAAGATCTTCATAGAAAGGTGCTTAAACTTCACCCTTGTTTAGCCCCTATTAAGG
TTGCTTTGGATGTGGGAAGAGGACCAACAGTGGAACTAAGACAGGTTTGTCAAGGGCTAT
TTAATGAACTACTAGAAAATGGAATTTCTGTATGGCCTGGTTATATGGAAACTGTACAGT
CCTCATTGGAACAACTTTATGCCAAATATGATGAAATGAGTATCCTCTTCACAGTGCTGA
TTACCGAAGCTACTTTGGAGAATGGATTAATACATCTGAGAAGTAGAGACACCACAATGA
AGGAAATGATGCATATATCCAAAGTAAAAGACTTTTTAACTAAATATATATCATCAGCTA
AGAATGTATAGATTTTAATATTTGTATAATAAATACTCCTCTTTCCTAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTCGCCTCCGGGAGCTTGATAGTTGTGTGGGTTTGGTCTAAGTTTAACTCCCGGGGAC
TATGCGCTCCGGTGCAGCCGGCAGGGCCTGCCAGAGAGTCTGCAGGTGCTTTTTTTCTGG
GTTTGGGACTCGAGTAGATGGGGGGCAGCCGGAGTACTTGAGAGAAAACGGCTCCGGTTC
CCTCGTAGGGCTTGCGGAGCCCCACGGTAGCGAGCGGAGAGAAGCTCCTGAGTCTAGTGA
TGAGGGGAGCGAGGTGCTGATAGAGATCTGTCAGAAAAGGCGTTTTCTCAGTGGCACCAA
GCGGAAGCTTAGCCGAGATTCTCTTCTCAGCGGGTGCCACCCCGGCTTTGGCCCCTTGGG
CATAGAGTTGCGGAAGAACCTGGCGGCAGAATGGTGGTCTTCGGTGGTGGTGTTCAGGGA
GCAGGTCTTCCCGGTAGACGCCCTCCACCATGAACCGGGGCCTTCGCTGCCTGGGGACAG
TGCCTTCAGGTGCCTTGGAGCATTATGTTAATTACCTGGATCTGATGAATAAGAGGCTAC
CTTTTGGCCTTGCTCAGATTGGAGTGTGTTTTCATCCTGTTTCTGACACTAAACAGACAT
CTGATGCTGTTAAAAGCCAAAGAATCGGTGAAAAGACTGAAGCTTCACTGGTGTGGTTTA
CTTCATCAAGAACTGCAAGCCAGTGGCTTGATTTCTGGCTACGTCATCGACTCCTGTGGT
GGAGAAAGTTTGCCATGAGTCCATCTAACTTCAGCAGCAGTGATTGTCAGGATGAAGCAG
GCCGGAAGGGAAACAAACTTTACTACAATTTTCCCTGGGGAAAGGAGCCAATAGAAACCC
TGTGGAATCTAGGAGATCAAGAACTTTTACATAAGTATCCAGAAAATGTGGCTCAATTGC
ACGGTCGAGATGGACGAAAAAATGTGGTTCCTTCTGTTTTATCTATAAACGGAGATCTAG
ACCAAGGCATGCTGGCATACCTCTATGATTCCTTCCAGCTAACGGAGAACTCCTTCACAA
GAAAGAAAGATCTTCATAGAAAGGTGCTTAAACTTCACCCTTGTTTAGCCCCTATTAAGG
TTGCTTTGGATGTGGGAAGAGGACCAACAGTGGAACTAAGACAGGTTTGTCAAGGGCTAT
TTAATGAACTACTAGAAAATGGAATTTCTGTATGGCCTGGTTATATGGAAACTGTACAGT
CCTCATTGGAACAACTTTATGCCAAATATGATGAAATGAGTATCCTCTTCACAGTGCTGA
TTACCGAAGCTACTTTGGAGAATGGATTAATACATCTGAGAAGTAGAGACACCACAATGA
AGGAAATGATGCATATATCCAAAGTAAAAGACTTTTTAACTAAATATATATCATCAGCTA
AGAATGTATAGATTTTAATATTTGTATAATAAATACTCCTCTTTCCTAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|2114436|gb|AAC51321.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|2114436|gb|AAC51321.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               767-886, + strand, RNAz p=0.554517

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               767-886, + strand, RNAz p=0.554517

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               47-491, gnl|bosTau2|chr19 (42620620-42620167)
               

               
               47-491, gnl|Hg17|chr17 (59923563-59923110)
               

               
               47-491, gnl|Mm7|chr11 (106888495-106888123)
               


               
               727-903, gnl|bosTau2|chr19 (42614322-42614146)
               

               
               727-903, gnl|Hg17|chr17 (59917550-59917374)
               

               
               727-903, gnl|Mm7|chr11 (106884643-106884467)
               


               
               1123-1452, gnl|bosTau2|chr8 (24684643-24684972)
               

               
               1123-1452, gnl|Hg17|chr17 (59906970-59904364)
               

               
               1123-1452, gnl|Mm7|chr11 (106881795-106877315)
               


               
               1210-1429, gnl|bosTau2|chr19 (42604867-42604648)
               

               
               1210-1429, gnl|Hg17|chr17 (59904584-59904364)
               

               
               1210-1429, gnl|Mm7|chr11 (106877526-106877313)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-491, gnl|bosTau2|chr19 (42620620-42620167)
               

               
               47-491, gnl|Hg17|chr17 (59923563-59923110)
               

               
               47-491, gnl|Mm7|chr11 (106888495-106888123)
               


               
               727-903, gnl|bosTau2|chr19 (42614322-42614146)
               

               
               727-903, gnl|Hg17|chr17 (59917550-59917374)
               

               
               727-903, gnl|Mm7|chr11 (106884643-106884467)
               


               
               1123-1452, gnl|bosTau2|chr8 (24684643-24684972)
               

               
               1123-1452, gnl|Hg17|chr17 (59906970-59904364)
               

               
               1123-1452, gnl|Mm7|chr11 (106881795-106877315)
               


               
               1210-1429, gnl|bosTau2|chr19 (42604867-42604648)
               

               
               1210-1429, gnl|Hg17|chr17 (59904584-59904364)
               

               
               1210-1429, gnl|Mm7|chr11 (106877526-106877313)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

Help | Less info


               
               spl (0.429553)
               

               
               cte (0.29274)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.429553)
               

               
               cte (0.29274)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	47-491, gnl\|bosTau2\|chr19 (42620620-42620167)
	47-491, gnl\|Hg17\|chr17 (59923563-59923110)
	47-491, gnl\|Mm7\|chr11 (106888495-106888123)

	727-903, gnl\|bosTau2\|chr19 (42614322-42614146)
	727-903, gnl\|Hg17\|chr17 (59917550-59917374)
	727-903, gnl\|Mm7\|chr11 (106884643-106884467)

	1123-1452, gnl\|bosTau2\|chr8 (24684643-24684972)
	1123-1452, gnl\|Hg17\|chr17 (59906970-59904364)
	1123-1452, gnl\|Mm7\|chr11 (106881795-106877315)

	1210-1429, gnl\|bosTau2\|chr19 (42604867-42604648)
	1210-1429, gnl\|Hg17\|chr17 (59904584-59904364)
	1210-1429, gnl\|Mm7\|chr11 (106877526-106877313)

	spl (0.429553)
	cte (0.29274)
	fli (0.202881)
	aor (0.195274)
	fco (0.157208)
	tbr (0.154178)
	liv (0.146284)
	lin (0.145603)
	pty (0.142714)
	kid (0.129735)
	ova (0.129132)
	cty (0.10408)
	ldo (0.0970026)