Non-Coding RNA Search

Ss1.1-Pig4-TMW8056A02.5

Sequence:


               
               ACAAGACCACCTCTTGGCTAGACCCCAGGCTTGACCCTCGTTTTGCCATGAACCAGAGAA
TCAGTCAAAGCGCTCCAGTGAAACAGCCCCCACCACTGGCTCCCCAGAGCCCTCAGGGAG
GAGTCATGGGTGGTGGCAGCTCCAACCAGCAGCAACAGATGCGGCTGCAACAGTTGCAGA
TGGAGAAGGAGAGACTGCGACTGAAGCAGCAAGAACTGCTTCGGCAGGAATTAGCTCTCC
GTAGCCAATTACCAACACTGGAGCAGGATGGCGGGACTCAAAATCCAGTTTCTTCTCCTG
GGATGTCTCAGGAATTAAGAACAATGACGACCAATAGCTCAGATCCCTTTCTTAACAGTG
GCACCTACCATTCTCGAGATGAGAGCACAGACAGCGGACTAAGCATGAGCAGCTACAGTG
TCCCTCGAACCCCAGATGACTTCTTGAACAGTGTTGGCCAAGAACCATAGCTGTAAATGA
ATCTCTCCATAAATGGCTAGTACAATAAAACTCGAGGATGAAAAGACGGCTCCTGTGAGA
GGAAATGAGCTGTTCAGACTTGTAGAGGGGATGCTTATTCAAAGTCACGTGTTTGCTTGT
GCCTATACTGTTGACTAACAGTTACGTACAGAATCATGAAGGAACATGTGAATGCCTTTC
TATGAAAGCAGATGAACTGCATCTTAAACCTACTTAGGTTTAGCCTTGTAAGGATCATTG
GAAGGACTTTTCCACACAGAAATGTTCAACCTGAGAGGGAGAACTGTAAGGCCTCATGTT
CTGAAAAGGGCTGTAGTTCAAGGAGACAGAGGTAAGGTTGTGTCTCTTTCAAAAATGCAT
TACTATTAAAGAGTATTTGAAAATAACAGTTTATTTTAACAGATGCCTTTTAGTGAGTTA
CCACAAATCTTGGGTTTCAGGCACATTGCAAAGATGTTATTATGTGAGTGCTATGTTAAA
AGCTGCATGCTGAGACAGATCATAGTCTTTGCCTAGAAAGCCATTTAAAATTAAGATTTG
ACTACAGTTCTTTTCTTCTAAGCTATAATATATTTATTGAGTTTCAGTTTTTGAAAATAT
GGAAAGAATGCTTTCTCATTTTTGTGCTTTTGATTTTTTAACCAACTTTGAACAGTGTAC
TTTTTAAAATGTTTAAAGGTAATTTTTGTATAGAAAGGATATTTGCTGCTCTTTTATTAA
TTCTCACCAATTAAATTGAAAGTGTCCTGACCCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAGACCACCTCTTGGCTAGACCCCAGGCTTGACCCTCGTTTTGCCATGAACCAGAGAA
TCAGTCAAAGCGCTCCAGTGAAACAGCCCCCACCACTGGCTCCCCAGAGCCCTCAGGGAG
GAGTCATGGGTGGTGGCAGCTCCAACCAGCAGCAACAGATGCGGCTGCAACAGTTGCAGA
TGGAGAAGGAGAGACTGCGACTGAAGCAGCAAGAACTGCTTCGGCAGGAATTAGCTCTCC
GTAGCCAATTACCAACACTGGAGCAGGATGGCGGGACTCAAAATCCAGTTTCTTCTCCTG
GGATGTCTCAGGAATTAAGAACAATGACGACCAATAGCTCAGATCCCTTTCTTAACAGTG
GCACCTACCATTCTCGAGATGAGAGCACAGACAGCGGACTAAGCATGAGCAGCTACAGTG
TCCCTCGAACCCCAGATGACTTCTTGAACAGTGTTGGCCAAGAACCATAGCTGTAAATGA
ATCTCTCCATAAATGGCTAGTACAATAAAACTCGAGGATGAAAAGACGGCTCCTGTGAGA
GGAAATGAGCTGTTCAGACTTGTAGAGGGGATGCTTATTCAAAGTCACGTGTTTGCTTGT
GCCTATACTGTTGACTAACAGTTACGTACAGAATCATGAAGGAACATGTGAATGCCTTTC
TATGAAAGCAGATGAACTGCATCTTAAACCTACTTAGGTTTAGCCTTGTAAGGATCATTG
GAAGGACTTTTCCACACAGAAATGTTCAACCTGAGAGGGAGAACTGTAAGGCCTCATGTT
CTGAAAAGGGCTGTAGTTCAAGGAGACAGAGGTAAGGTTGTGTCTCTTTCAAAAATGCAT
TACTATTAAAGAGTATTTGAAAATAACAGTTTATTTTAACAGATGCCTTTTAGTGAGTTA
CCACAAATCTTGGGTTTCAGGCACATTGCAAAGATGTTATTATGTGAGTGCTATGTTAAA
AGCTGCATGCTGAGACAGATCATAGTCTTTGCCTAGAAAGCCATTTAAAATTAAGATTTG
ACTACAGTTCTTTTCTTCTAAGCTATAATATATTTATTGAGTTTCAGTTTTTGAAAATAT
GGAAAGAATGCTTTCTCATTTTTGTGCTTTTGATTTTTTAACCAACTTTGAACAGTGTAC
TTTTTAAAATGTTTAAAGGTAATTTTTGTATAGAAAGGATATTTGCTGCTCTTTTATTAA
TTCTCACCAATTAAATTGAAAGTGTCCTGACCCTTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               45-139, - strand, RNAz p=0.558861
               

               
               84-228, - strand, RNAz p=0.989805

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-139, - strand, RNAz p=0.558861
               

               
               84-228, - strand, RNAz p=0.989805

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               45-228, gnl|bosTau2|chr2 (83940586-83940403)
               

               
               45-228, gnl|canFam2|chr5 (32421346-32421122)
               

               
               45-228, gnl|danRer3|chr18 (39362006-39361804)
               

               
               45-228, gnl|dasNov1|scaffold_66240 (1795-1583)
               

               
               45-228, gnl|echTel1|scaffold_316807 (56701-56474)
               

               
               45-228, gnl|fr1|chrUn (142815810-142815990)
               

               
               45-228, gnl|galGal2|chr1 (174600954-174600723)
               

               
               45-228, gnl|hg17|chr11 (101581816-101582044)
               

               
               45-228, gnl|Hg17|chr11 (101581833-101582016)
               

               
               45-228, gnl|loxAfr1|scaffold_4174 (9737-9510)
               

               
               45-228, gnl|mm7|chr9 (7977044-7976818)
               

               
               45-228, gnl|Mm7|chr9 (7977027-7976844)
               

               
               45-228, gnl|monDom2|scaffold_65 (7287357-7287583)
               

               
               45-228, gnl|oryCun1|scaffold_202521 (55420-55192)
               

               
               45-228, gnl|panTro1|chr9 (103553036-103553264)
               

               
               45-228, gnl|rheMac2|chr14 (100796150-100796378)
               

               
               45-228, gnl|rn3|chr8 (4797859-4797633)
               

               
               45-228, gnl|tetNig1|chr16 (5625598-5625779)
               

               
               45-228, gnl|xenTro1|scaffold_601 (132939-133161)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-228, gnl|bosTau2|chr2 (83940586-83940403)
               

               
               45-228, gnl|canFam2|chr5 (32421346-32421122)
               

               
               45-228, gnl|danRer3|chr18 (39362006-39361804)
               

               
               45-228, gnl|dasNov1|scaffold_66240 (1795-1583)
               

               
               45-228, gnl|echTel1|scaffold_316807 (56701-56474)
               

               
               45-228, gnl|fr1|chrUn (142815810-142815990)
               

               
               45-228, gnl|galGal2|chr1 (174600954-174600723)
               

               
               45-228, gnl|hg17|chr11 (101581816-101582044)
               

               
               45-228, gnl|Hg17|chr11 (101581833-101582016)
               

               
               45-228, gnl|loxAfr1|scaffold_4174 (9737-9510)
               

               
               45-228, gnl|mm7|chr9 (7977044-7976818)
               

               
               45-228, gnl|Mm7|chr9 (7977027-7976844)
               

               
               45-228, gnl|monDom2|scaffold_65 (7287357-7287583)
               

               
               45-228, gnl|oryCun1|scaffold_202521 (55420-55192)
               

               
               45-228, gnl|panTro1|chr9 (103553036-103553264)
               

               
               45-228, gnl|rheMac2|chr14 (100796150-100796378)
               

               
               45-228, gnl|rn3|chr8 (4797859-4797633)
               

               
               45-228, gnl|tetNig1|chr16 (5625598-5625779)
               

               
               45-228, gnl|xenTro1|scaffold_601 (132939-133161)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               tes (0.415628)
               

               
               csk (0.140746)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               csk (0.140746)

	45-139, - strand, RNAz p=0.558861
	84-228, - strand, RNAz p=0.989805

	45-228, gnl\|bosTau2\|chr2 (83940586-83940403)
	45-228, gnl\|canFam2\|chr5 (32421346-32421122)
	45-228, gnl\|danRer3\|chr18 (39362006-39361804)
	45-228, gnl\|dasNov1\|scaffold_66240 (1795-1583)
	45-228, gnl\|echTel1\|scaffold_316807 (56701-56474)
	45-228, gnl\|fr1\|chrUn (142815810-142815990)
	45-228, gnl\|galGal2\|chr1 (174600954-174600723)
	45-228, gnl\|hg17\|chr11 (101581816-101582044)
	45-228, gnl\|Hg17\|chr11 (101581833-101582016)
	45-228, gnl\|loxAfr1\|scaffold_4174 (9737-9510)
	45-228, gnl\|mm7\|chr9 (7977044-7976818)
	45-228, gnl\|Mm7\|chr9 (7977027-7976844)
	45-228, gnl\|monDom2\|scaffold_65 (7287357-7287583)
	45-228, gnl\|oryCun1\|scaffold_202521 (55420-55192)
	45-228, gnl\|panTro1\|chr9 (103553036-103553264)
	45-228, gnl\|rheMac2\|chr14 (100796150-100796378)
	45-228, gnl\|rn3\|chr8 (4797859-4797633)
	45-228, gnl\|tetNig1\|chr16 (5625598-5625779)
	45-228, gnl\|xenTro1\|scaffold_601 (132939-133161)