Non-Coding RNA Search

Ss1.1-Pig4-TMW8056A09.5

Sequence:


               
               CTTTTTTTTCCCTTTTTCATCTGACGTATATTCAAACATTGTTCTTTATAACCATTTCTA
CCTCATTGCTACATATTGTACATGTAGTATTTATTTGTTGTCTTTTTTTGAATGTCATGC
ATTTCGTAAGAAAAAGACTTGTCCTTGAACTTGAACAGTCTACCTCAAAAAGACTGTCTT
TACACTGAACAGTATTAGCAACCTAAATGATAAGACGCATTAGCGAAGTGTGGCAGGGTA
GATAATGCACGAGTACTTGGGATACTGATGGACTTTTAATTGTACTCATAACACAAGACT
GCTTAAAAGAACTTAAAAGAAATTATGCACTGTGTAGGTCTTCATCAATGTCCCATGTGG
GGAATAATATACAGAATACAGCTTTATTCCTATGCGACCATCTCTGAGAAATGTGTTAGC
ATTCTCAAATATTTTACACTGGCAATCTGGCTACTTAAAATAAATTAAAACATCATTTTT
ATATTCTTTTGACTGATAACCTTAGCTCTTAAATTTAAGAGAAATAACGGTACTTAATTA
TTTTTAACTGCAGTCTTCAGTGATTTTTAAATGCCTTCATTTTAATTCTGTGACTCCTGA
TATAAATTAATAAAAAACAATGCAGTTGCAAGGACCTGCACAACACTGAAAAGAAACCAA
AAAATTATAAATGGCACTTCCCAAAGGAATTAACAACATGGAGTCATGGGTGCTTGCAAG
TTCCGTAACTGAAAGTATTTTGTTTCTGATTTCCCTTTATAACATGTATTTGTTTATTGA
AGTAATTGTATAAGTAATGGCACATCAAATTACTTTGTATGAAGTGTTTTATATTTTACT
ATTTATTTTAGCATTTTTTCTTTTTCTTCACCAGCTCTATATTACAATAGCAAAAGAACA
CTTACTTTAAAAACAAAAAAAATGCTGAAAGGGGTCCACCACCCACCCAATCGCTGAACA
GACTTTTGAAGTTGCTTGTCAGCAAATTGTGGATATTTTACAAAAGCAAATGAACTGTGA
CAATCCACAACTCCCACAGATGTGAATTCAGAAATACATCTGAAACTCCCGGTATGCCTG
ACAATCTATTCTTTAAGTTTCATTAACAAAGTGTCATCCAATCCTTTCACTTACAATTCC
TTGAAGGAATGTATTGTCTAGAGGCTGTCTAGTAGTGATTAAGAGAGGGGTTTTGTTTTA
CTTGTTTACTGTATTAGGTGAGGAATGCCATATTTCTTGTCAGCTAACAGTACTTGCCTG
AAACAGAAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTTTTTCCCTTTTTCATCTGACGTATATTCAAACATTGTTCTTTATAACCATTTCTA
CCTCATTGCTACATATTGTACATGTAGTATTTATTTGTTGTCTTTTTTTGAATGTCATGC
ATTTCGTAAGAAAAAGACTTGTCCTTGAACTTGAACAGTCTACCTCAAAAAGACTGTCTT
TACACTGAACAGTATTAGCAACCTAAATGATAAGACGCATTAGCGAAGTGTGGCAGGGTA
GATAATGCACGAGTACTTGGGATACTGATGGACTTTTAATTGTACTCATAACACAAGACT
GCTTAAAAGAACTTAAAAGAAATTATGCACTGTGTAGGTCTTCATCAATGTCCCATGTGG
GGAATAATATACAGAATACAGCTTTATTCCTATGCGACCATCTCTGAGAAATGTGTTAGC
ATTCTCAAATATTTTACACTGGCAATCTGGCTACTTAAAATAAATTAAAACATCATTTTT
ATATTCTTTTGACTGATAACCTTAGCTCTTAAATTTAAGAGAAATAACGGTACTTAATTA
TTTTTAACTGCAGTCTTCAGTGATTTTTAAATGCCTTCATTTTAATTCTGTGACTCCTGA
TATAAATTAATAAAAAACAATGCAGTTGCAAGGACCTGCACAACACTGAAAAGAAACCAA
AAAATTATAAATGGCACTTCCCAAAGGAATTAACAACATGGAGTCATGGGTGCTTGCAAG
TTCCGTAACTGAAAGTATTTTGTTTCTGATTTCCCTTTATAACATGTATTTGTTTATTGA
AGTAATTGTATAAGTAATGGCACATCAAATTACTTTGTATGAAGTGTTTTATATTTTACT
ATTTATTTTAGCATTTTTTCTTTTTCTTCACCAGCTCTATATTACAATAGCAAAAGAACA
CTTACTTTAAAAACAAAAAAAATGCTGAAAGGGGTCCACCACCCACCCAATCGCTGAACA
GACTTTTGAAGTTGCTTGTCAGCAAATTGTGGATATTTTACAAAAGCAAATGAACTGTGA
CAATCCACAACTCCCACAGATGTGAATTCAGAAATACATCTGAAACTCCCGGTATGCCTG
ACAATCTATTCTTTAAGTTTCATTAACAAAGTGTCATCCAATCCTTTCACTTACAATTCC
TTGAAGGAATGTATTGTCTAGAGGCTGTCTAGTAGTGATTAAGAGAGGGGTTTTGTTTTA
CTTGTTTACTGTATTAGGTGAGGAATGCCATATTTCTTGTCAGCTAACAGTACTTGCCTG
AAACAGAAATTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               3-122, - strand, RNAz p=0.687806
               

               
               839-1217, - strand, RNAz p=0.981664

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-122, - strand, RNAz p=0.687806
               

               
               839-1217, - strand, RNAz p=0.981664

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1270, gnl|bosTau2|chr2 (23310170-23308911)
               

               
               3-1270, gnl|Hg17|chr2 (164286727-164285463)
               

               
               3-1270, gnl|Mm7|chr2 (63904216-63902890)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1270, gnl|bosTau2|chr2 (23310170-23308911)
               

               
               3-1270, gnl|Hg17|chr2 (164286727-164285463)
               

               
               3-1270, gnl|Mm7|chr2 (63904216-63902890)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               ste (0.135208)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               ste (0.135208)

	3-122, - strand, RNAz p=0.687806
	839-1217, - strand, RNAz p=0.981664

	3-1270, gnl\|bosTau2\|chr2 (23310170-23308911)
	3-1270, gnl\|Hg17\|chr2 (164286727-164285463)
	3-1270, gnl\|Mm7\|chr2 (63904216-63902890)