Non-Coding RNA Search

Ss1.1-Pig4-TMW8056A11.5

Sequence:


               
               CGACCCCCACCTGCCTGGACGCCATCAACTGATTCTGGATGCTCAGCCCTAACCCTGAGG
CCCCAGCAGGAGCTGGTTGAGAGCAGCCCTGCCGCCTCATTCCTTAGTTCCCGGAGCTGG
CAGGGGCTGCAGCCGCGCTTGGGTCAGACGCCAGTGACGGGAGCTGTGAGTGGAAGACGA
GGGATTGCCATCGCCTACGAGGATGAGGGAAGCAGCTGATACCGTGTGGGGCCAGGGCCC
CAGGTGGACTCAGGAATCACTGCTGAGAGCTTCAGTGCTCTCTCTGCACCAACCTCACTC
TTCGGCCAGGATCCTCCGGGGGGCCCTTCACTGCGGATAGGATCCGGCTCTGTTCTCTCC
CGTCCTGGCACTGGCACAAGGCCTGGCACATGCTGGCTTAGGGCATGCCTCTTGTTTGAC
TGATGGAGGAAGAGCTGTGGGTCTTCCCAGAATCCTTCTTGCACCCCTGGGAGCAGCCCA
AGACCTCTGGCCAATCCAGGATCCTGCTGTGCAGTTGAGGGTGTGTCCTGGTCAGAGGCA
GCTGCTGGATGCTTTGGAGCAGGTCTTCTCTGCCTCTGCGCTGTTGACACCTCGGGTGAC
GTGGGTGCCTACTGTGAGGGGGTGTCCTGTGGAGGCAGGACGTTTAGCACCATCTCTGGT
TTCTGCCCAGTAGATGCCAGCAGTATACCCCTCCCCGCCTGCGATGACCAGCAATGTCTC
CAGATATTGACAGATGTCCCCTATGGGGGCAAAACTGCCCCCAGTCGAGAAGCGCTGGTC
TACACCTATGCTGTCCAACACAGTAGCTACATGCGGCTGTTCAAACATACGTCTGAATTC
ATCAAGGTTAAAAACTCAGTTTCTTAGTCGCGCGAATCTCATTTCAGTGCGCGGGCAGCC
ACACGAGAGGAGGGCGCGGCTATAGGACGTTTCCATCACCCCGAAAGCTGTCAGCTGGTG
CTGGGCTGTACCACTCCAGTTTGTTTCTCAGGGAAACAACAGAAACGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACCCCCACCTGCCTGGACGCCATCAACTGATTCTGGATGCTCAGCCCTAACCCTGAGG
CCCCAGCAGGAGCTGGTTGAGAGCAGCCCTGCCGCCTCATTCCTTAGTTCCCGGAGCTGG
CAGGGGCTGCAGCCGCGCTTGGGTCAGACGCCAGTGACGGGAGCTGTGAGTGGAAGACGA
GGGATTGCCATCGCCTACGAGGATGAGGGAAGCAGCTGATACCGTGTGGGGCCAGGGCCC
CAGGTGGACTCAGGAATCACTGCTGAGAGCTTCAGTGCTCTCTCTGCACCAACCTCACTC
TTCGGCCAGGATCCTCCGGGGGGCCCTTCACTGCGGATAGGATCCGGCTCTGTTCTCTCC
CGTCCTGGCACTGGCACAAGGCCTGGCACATGCTGGCTTAGGGCATGCCTCTTGTTTGAC
TGATGGAGGAAGAGCTGTGGGTCTTCCCAGAATCCTTCTTGCACCCCTGGGAGCAGCCCA
AGACCTCTGGCCAATCCAGGATCCTGCTGTGCAGTTGAGGGTGTGTCCTGGTCAGAGGCA
GCTGCTGGATGCTTTGGAGCAGGTCTTCTCTGCCTCTGCGCTGTTGACACCTCGGGTGAC
GTGGGTGCCTACTGTGAGGGGGTGTCCTGTGGAGGCAGGACGTTTAGCACCATCTCTGGT
TTCTGCCCAGTAGATGCCAGCAGTATACCCCTCCCCGCCTGCGATGACCAGCAATGTCTC
CAGATATTGACAGATGTCCCCTATGGGGGCAAAACTGCCCCCAGTCGAGAAGCGCTGGTC
TACACCTATGCTGTCCAACACAGTAGCTACATGCGGCTGTTCAAACATACGTCTGAATTC
ATCAAGGTTAAAAACTCAGTTTCTTAGTCGCGCGAATCTCATTTCAGTGCGCGGGCAGCC
ACACGAGAGGAGGGCGCGGCTATAGGACGTTTCCATCACCCCGAAAGCTGTCAGCTGGTG
CTGGGCTGTACCACTCCAGTTTGTTTCTCAGGGAAACAACAGAAACGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               267-395, - strand, RNAz p=0.93802
               

               
               666-818, - strand, RNAz p=0.998213

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               267-395, - strand, RNAz p=0.93802
               

               
               666-818, - strand, RNAz p=0.998213

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               108-1006, gnl|bosTau2|chr3 (70986005-70985112)
               

               
               108-1006, gnl|Hg17|chr1 (44107193-44108111)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               108-1006, gnl|bosTau2|chr3 (70986005-70985112)
               

               
               108-1006, gnl|Hg17|chr1 (44107193-44108111)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fty (0.17584)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	267-395, - strand, RNAz p=0.93802
	666-818, - strand, RNAz p=0.998213

	108-1006, gnl\|bosTau2\|chr3 (70986005-70985112)
	108-1006, gnl\|Hg17\|chr1 (44107193-44108111)

	fty (0.17584)
	ton (0.1755)
	nje (0.16592)
	cly (0.120642)
	eru (0.120048)
	ecc (0.115035)
	jca (0.11396)
	nbm (0.0993246)