Ss1.1-Pig4-TMW8056A16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCACTGTCTACCCGGCCATCTGGCTTCCTGGGAGAGCCTTGCCTTTGGGACCAGGCTG AGCAGGTCCTTCAACAGGCTCTGGAAGAATTTGGAGAACCCTGGGACCTCAATCCTGGAG ATGGTGCCTTCTATGGACCTAAGATTGACGTGCATGTCCGCGATGCCCTGGGCCGGCCCC ATCAGTGTGGGACAATCCAGCTTGACTTCCAGCTGCCTCTGAGATTTGACCTCCAGTACA AGGGGCAGGCGGGGGCCCTGGAGCGTCCAGTCCTCATTCATCGAGCAGTGCTAGGTTCTG TGGAGAGGATGTTGGGCGTGCTGGCAGAAAGCTGTGGGGGGAAATGGCCCCTGTGGCTGT CCCCATTCCAGGTGGTGGTCATCCCTGTGGGGAGTGAGCAAGAGGAATACGCCAGGGAGG CACAGCAGAGCCTTCGAGCTGCAGGACTGGTCGGAGACCTGGACGCCGACTCTGGACTGA CTCTCAGTCGGAGAGTCCGACGGGCTCAGCTTGCCCACTACAATTTTCAGTTTGTTGTTG GCCAGAAAGAGCAGAGTAAGAGAACAGTGAACATTCGGACTCGAGATAATCATCGACTTG GGGAGCGGGACTTGGCTGAGGCTGTACAGCGGCTGCTGGAGCTGCAGAACACCAGAGTCC CAAATGCTGAAGAAATTTTTTAAGTTTCTCTATGTAGATGTGTCAAAGATCTGCAGGGGC CGCCAGCCCTCCTTAACACAGGAGAGCCCAACCTGACTGACAGAATCCAGAGTTCCCCCA GGGCCCTCAGAACTCATGTGGAGGCGTGAATCTGCTCTCCTGAAGAGAGATTTGGTCCAG GGGAACCTGTTGCTATTTGGATGTGAGGAGAATGAAACTAAAAGTAATAAACTCGAGGAG TTCCCTGGTGGCCTAGAAGTTAAGGATCCAGCATTGTCACTGCTGTGGCTTTGAACCCTG GCCCAGGAACTTTGGTGAGACCAAATAAATAAAGATAAAAATAATAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCACTGTCTACCCGGCCATCTGGCTTCCTGGGAGAGCCTTGCCTTTGGGACCAGGCTG AGCAGGTCCTTCAACAGGCTCTGGAAGAATTTGGAGAACCCTGGGACCTCAATCCTGGAG ATGGTGCCTTCTATGGACCTAAGATTGACGTGCATGTCCGCGATGCCCTGGGCCGGCCCC ATCAGTGTGGGACAATCCAGCTTGACTTCCAGCTGCCTCTGAGATTTGACCTCCAGTACA AGGGGCAGGCGGGGGCCCTGGAGCGTCCAGTCCTCATTCATCGAGCAGTGCTAGGTTCTG TGGAGAGGATGTTGGGCGTGCTGGCAGAAAGCTGTGGGGGGAAATGGCCCCTGTGGCTGT CCCCATTCCAGGTGGTGGTCATCCCTGTGGGGAGTGAGCAAGAGGAATACGCCAGGGAGG CACAGCAGAGCCTTCGAGCTGCAGGACTGGTCGGAGACCTGGACGCCGACTCTGGACTGA CTCTCAGTCGGAGAGTCCGACGGGCTCAGCTTGCCCACTACAATTTTCAGTTTGTTGTTG GCCAGAAAGAGCAGAGTAAGAGAACAGTGAACATTCGGACTCGAGATAATCATCGACTTG GGGAGCGGGACTTGGCTGAGGCTGTACAGCGGCTGCTGGAGCTGCAGAACACCAGAGTCC CAAATGCTGAAGAAATTTTTTAAGTTTCTCTATGTAGATGTGTCAAAGATCTGCAGGGGC CGCCAGCCCTCCTTAACACAGGAGAGCCCAACCTGACTGACAGAATCCAGAGTTCCCCCA GGGCCCTCAGAACTCATGTGGAGGCGTGAATCTGCTCTCCTGAAGAGAGATTTGGTCCAG GGGAACCTGTTGCTATTTGGATGTGAGGAGAATGAAACTAAAAGTAATAAACTCGAGGAG TTCCCTGGTGGCCTAGAAGTTAAGGATCCAGCATTGTCACTGCTGTGGCTTTGAACCCTG GCCCAGGAACTTTGGTGAGACCAAATAAATAAAGATAAAAATAATAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 142-245, gnl|bosTau2|chr3 (17009766-17009663) | |
| 142-245, gnl|canFam2|chr17 (62770346-62770466) | |
| 142-245, gnl|danRer3|chrNA (40732225-40732314) | |
| 142-245, gnl|dasNov1|scaffold_37271 (48566-48684) | |
| 142-245, gnl|echTel1|scaffold_314902 (71493-71608) | |
| 142-245, gnl|fr1|chrUn (214501824-214501941) | |
| 142-245, gnl|hg17|chr1 (147289850-147289972) | |
| 142-245, gnl|Hg17|chr1 (147289882-147289985) | |
| 142-245, gnl|loxAfr1|scaffold_13165 (34703-34795) | |
| 142-245, gnl|mm7|chr3 (95616655-95616542) | |
| 142-245, gnl|Mm7|chr3 (95616630-95616527) | |
| 142-245, gnl|monDom2|scaffold_44 (3659311-3659407) | |
| 142-245, gnl|oryCun1|scaffold_182951 (12145-12042) | |
| 142-245, gnl|panTro1|chr1 (129013874-129013996) | |
| 142-245, gnl|rheMac2|chr1 (128883962-128884084) | |
| 142-245, gnl|rn3|chr2 (190496170-190496060) | |
| 142-245, gnl|tetNig1|chr8 (8751671-8751574) | |
| 142-245, gnl|xenTro1|scaffold_1136 (188727-188616) | |
| 534-924, gnl|bosTau2|chr3 (17007586-17007203) | |
| 534-924, gnl|canFam2|chr17 (62775255-62774895) | |
| 534-924, gnl|dasNov1|scaffold_39623 (39530-39149) | |
| 534-924, gnl|echTel1|scaffold_314902 (73900-73564) | |
| 534-924, gnl|Hg17|chr1 (147292464-147292838) | |
| 534-924, gnl|hg17|chr4 (136843638-136844024) | |
| 534-924, gnl|mm7|chr3 (95613928-95614269) | |
| 534-924, gnl|oryCun1|scaffold_182951 (8814-9179) | |
| 534-924, gnl|panTro1|chr3 (153893899-153894282) | |
| 534-924, gnl|rheMac2|chr5 (127950574-127950959) | |
| 534-924, gnl|rn3|chr2 (190493535-190493874) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 142-245, gnl|bosTau2|chr3 (17009766-17009663) | |
| 142-245, gnl|canFam2|chr17 (62770346-62770466) | |
| 142-245, gnl|danRer3|chrNA (40732225-40732314) | |
| 142-245, gnl|dasNov1|scaffold_37271 (48566-48684) | |
| 142-245, gnl|echTel1|scaffold_314902 (71493-71608) | |
| 142-245, gnl|fr1|chrUn (214501824-214501941) | |
| 142-245, gnl|hg17|chr1 (147289850-147289972) | |
| 142-245, gnl|Hg17|chr1 (147289882-147289985) | |
| 142-245, gnl|loxAfr1|scaffold_13165 (34703-34795) | |
| 142-245, gnl|mm7|chr3 (95616655-95616542) | |
| 142-245, gnl|Mm7|chr3 (95616630-95616527) | |
| 142-245, gnl|monDom2|scaffold_44 (3659311-3659407) | |
| 142-245, gnl|oryCun1|scaffold_182951 (12145-12042) | |
| 142-245, gnl|panTro1|chr1 (129013874-129013996) | |
| 142-245, gnl|rheMac2|chr1 (128883962-128884084) | |
| 142-245, gnl|rn3|chr2 (190496170-190496060) | |
| 142-245, gnl|tetNig1|chr8 (8751671-8751574) | |
| 142-245, gnl|xenTro1|scaffold_1136 (188727-188616) | |
| 534-924, gnl|bosTau2|chr3 (17007586-17007203) | |
| 534-924, gnl|canFam2|chr17 (62775255-62774895) | |
| 534-924, gnl|dasNov1|scaffold_39623 (39530-39149) | |
| 534-924, gnl|echTel1|scaffold_314902 (73900-73564) | |
| 534-924, gnl|Hg17|chr1 (147292464-147292838) | |
| 534-924, gnl|hg17|chr4 (136843638-136844024) | |
| 534-924, gnl|mm7|chr3 (95613928-95614269) | |
| 534-924, gnl|oryCun1|scaffold_182951 (8814-9179) | |
| 534-924, gnl|panTro1|chr3 (153893899-153894282) | |
| 534-924, gnl|rheMac2|chr5 (127950574-127950959) | |
| 534-924, gnl|rn3|chr2 (190493535-190493874) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| elu (0.385356) | |
| ebs (0.236602) | |
| tes (0.207814) | |
| cje (0.165235) | |
| cst (0.140036) | |
| ute (0.132784) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| ebs (0.236602) | |
| tes (0.207814) | |
| cje (0.165235) | |
| cst (0.140036) | |
| ute (0.132784) |