Non-Coding RNA Search

Ss1.1-Pig4-TMW8056B15.3

Sequence:


               
               CCCGGCGTCAGGAGCTTGGCACCTGCCGGCGGGGCCCGGCGCTTTCGGCTGGGAAACTTC
TGCGGGTGAGAGGCTGGAGCTCCGCGAGGGGCCGAGGAATCCAGGAAACCACAGAATATT
TGAGGACTACATGTAAGTCAGAGGCCCAGATGAACTTAAGGATGCTATAACATGGGATTC
TTAGTTTTTTAAGATCCATATACATCAAGCCCCAGTCCAGTGTCCAGGCTTTCGATTTTG
TGAAGAGAGCAAAACTCTGATGATGGAAAAGCCAAGGACTTAATCACTTGCTTCGATATC
ATCTCACATCCACTGAAACGTGAAGCAGACCATAGCACAGCCATGGAAAGAAATTCAAGT
TTATGGAAGAACTTAATAGATGAGCACCCAGTCTGCACCAGCTGGAAGCAGGAGGCTGAG
GGAGCCATCTGTCATCTCGCCAGTATTTTATTTGTAGATCAGAGTGACAGTTGATGGCGA
ATTTCTGCATTACATTTTCCCCTTCCAGTTTCTGGATTCTCCTGAATGGGACTCACTGAG
ACCCACGGAGGAAGGTATCTTTCAGGTAACTCTCACAGCAGAAACTGATTGTCGCTATGT
GTCTTGGAGGAGAAAGAAATTATACTTGCTCTTGGCTCAACATCGTTACATCTCCCGCCT
GTTTTCAGTCTTAATTGGCAGTGACATTGCAGACAAACTCTATGCCTTGAATGACAGGGT
ATATATAGGAAAAAGATATCATTACGATATTCGGTTACCCAACTTCTATCAAATGTCAAG
TCCAGAAATGTCCAGATCACCCCTGACGGAACAGTTTCGGAATTCCAGAAGATATTGTGA
TAAGTGACCCCGCAAAGTCTGAAGTTTTGTAATTATAAAAAAAGACTCTCGTTATCATTC
CCCAGATGTAATAGCAAAATACAGAAAATTGAGTTCACTGATATTTTTATAAATCCAACT
CAGAGGCAAGATGCCATTGCCAACTGTTTTATTCATCTCAACTTGTGCATTGTCAATAAA
TTTTACAATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGCGTCAGGAGCTTGGCACCTGCCGGCGGGGCCCGGCGCTTTCGGCTGGGAAACTTC
TGCGGGTGAGAGGCTGGAGCTCCGCGAGGGGCCGAGGAATCCAGGAAACCACAGAATATT
TGAGGACTACATGTAAGTCAGAGGCCCAGATGAACTTAAGGATGCTATAACATGGGATTC
TTAGTTTTTTAAGATCCATATACATCAAGCCCCAGTCCAGTGTCCAGGCTTTCGATTTTG
TGAAGAGAGCAAAACTCTGATGATGGAAAAGCCAAGGACTTAATCACTTGCTTCGATATC
ATCTCACATCCACTGAAACGTGAAGCAGACCATAGCACAGCCATGGAAAGAAATTCAAGT
TTATGGAAGAACTTAATAGATGAGCACCCAGTCTGCACCAGCTGGAAGCAGGAGGCTGAG
GGAGCCATCTGTCATCTCGCCAGTATTTTATTTGTAGATCAGAGTGACAGTTGATGGCGA
ATTTCTGCATTACATTTTCCCCTTCCAGTTTCTGGATTCTCCTGAATGGGACTCACTGAG
ACCCACGGAGGAAGGTATCTTTCAGGTAACTCTCACAGCAGAAACTGATTGTCGCTATGT
GTCTTGGAGGAGAAAGAAATTATACTTGCTCTTGGCTCAACATCGTTACATCTCCCGCCT
GTTTTCAGTCTTAATTGGCAGTGACATTGCAGACAAACTCTATGCCTTGAATGACAGGGT
ATATATAGGAAAAAGATATCATTACGATATTCGGTTACCCAACTTCTATCAAATGTCAAG
TCCAGAAATGTCCAGATCACCCCTGACGGAACAGTTTCGGAATTCCAGAAGATATTGTGA
TAAGTGACCCCGCAAAGTCTGAAGTTTTGTAATTATAAAAAAAGACTCTCGTTATCATTC
CCCAGATGTAATAGCAAAATACAGAAAATTGAGTTCACTGATATTTTTATAAATCCAACT
CAGAGGCAAGATGCCATTGCCAACTGTTTTATTCATCTCAACTTGTGCATTGTCAATAAA
TTTTACAATTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55627130|ref|XP_518655.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55627130|ref|XP_518655.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               103-457, gnl|bosTau2|chr24 (31313662-31314025)
               

               
               103-457, gnl|Hg17|chr6 (105716730-105716363)
               

               
               103-457, gnl|Mm7|chr10 (45126502-45126852)
               


               
               560-1032, gnl|bosTau2|chr24 (31316392-31316859)
               

               
               560-1032, gnl|Hg17|chr6 (105713324-105712856)
               

               
               560-1032, gnl|Mm7|chr10 (45129636-45130056)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-457, gnl|bosTau2|chr24 (31313662-31314025)
               

               
               103-457, gnl|Hg17|chr6 (105716730-105716363)
               

               
               103-457, gnl|Mm7|chr10 (45126502-45126852)
               


               
               560-1032, gnl|bosTau2|chr24 (31316392-31316859)
               

               
               560-1032, gnl|Hg17|chr6 (105713324-105712856)
               

               
               560-1032, gnl|Mm7|chr10 (45129636-45130056)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               isp (0.300752)
               

               
               ton (0.1755)
               

               
               ctl (0.153069)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.300752)
               

               
               ton (0.1755)
               

               
               ctl (0.153069)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	103-457, gnl\|bosTau2\|chr24 (31313662-31314025)
	103-457, gnl\|Hg17\|chr6 (105716730-105716363)
	103-457, gnl\|Mm7\|chr10 (45126502-45126852)

	560-1032, gnl\|bosTau2\|chr24 (31316392-31316859)
	560-1032, gnl\|Hg17\|chr6 (105713324-105712856)
	560-1032, gnl\|Mm7\|chr10 (45129636-45130056)

	isp (0.300752)
	ton (0.1755)
	ctl (0.153069)
	hlv (0.139256)
	pla (0.133672)
	jca (0.11396)
	ldo (0.0970026)