Non-Coding RNA Search

Ss1.1-Pig4-TMW8056B16.5

Sequence:


               
               GCGCGGTGATTCACTCCCTCCTTCGCCCCGGGGCCCCCTTCCCGGCCAGACGGCGGGGAA
GACGGTTGGGTGTGCAGCGTCCTCGAACCCGCAAGCAAGCGAGCAGCTCCTCGGCGCCCT
TCGGGACTCAGGTCCACGCCATGGCGGATTCCGAGCGCCTCTCGGCCCCGGGCTGCTGGG
CCGCCTGCACCAACTTCTCGCGCACCCGAAAGGGATTTGTCCTGTTGGCTGAGATTGTAG
TGTGCCTGGTGATTCTGATCTGCTTCAGTGCCGCGACGTCAGGATTCTCTTTCCTGTCGG
TGATAGAGATGATCTTTGCTGCTGTCTTCTTTGTCATCTACATGTGTGACCTGCACACCA
AGATACAAATCATCAACTGGCCTTGGAGTGATTTCTTCCGAACCCTCATAGCAGCCATCC
TCTACCTGATCACCTCCATCCTTGTGCTCGTGGAGGGAGGACACAGCTCCAAAATTGCCG
CAGGGGTACTGGGCCTACTGGCTGCATGCTTGTTTGGCTACGATGCCTACATTACTTTCC
CCTTGAGGCAGCAAAGACATACAGCAGCCCCTACTGACCCTGCAGATGGCCCCGTGTAGG
TGAACTCCCTTCGCGTGTCTCTCAGCAACCTGCAAATAACACCTCCATCGCAATAACTCC
TTCCCGCCCCTACTGAAAGTGCCTTTACCGGGAGACCATGCCTTCCAGCCTGCCAATCAA
CCCTCCTGGGCGTGGCCACCCTTATGGGTCCGCCTAGGTCCACCTTCCTTCTGCAGTATC
CAGAGACGCTAGTTCTGCCTGGACAATGCCCCCACCTAAAGCCACAGATTTCAGACTCCA
GGCCCCAGGTTGTGACCCTCTCCAAATAACCTTTTCTGTGTGTGTTGGGTGGGAGGGGTT
CCATGGAGGAATAAATACATAATAACCAGATTGTTAGAACATATGAGAATGAATAAATTA
AGCCTTTGATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCGGTGATTCACTCCCTCCTTCGCCCCGGGGCCCCCTTCCCGGCCAGACGGCGGGGAA
GACGGTTGGGTGTGCAGCGTCCTCGAACCCGCAAGCAAGCGAGCAGCTCCTCGGCGCCCT
TCGGGACTCAGGTCCACGCCATGGCGGATTCCGAGCGCCTCTCGGCCCCGGGCTGCTGGG
CCGCCTGCACCAACTTCTCGCGCACCCGAAAGGGATTTGTCCTGTTGGCTGAGATTGTAG
TGTGCCTGGTGATTCTGATCTGCTTCAGTGCCGCGACGTCAGGATTCTCTTTCCTGTCGG
TGATAGAGATGATCTTTGCTGCTGTCTTCTTTGTCATCTACATGTGTGACCTGCACACCA
AGATACAAATCATCAACTGGCCTTGGAGTGATTTCTTCCGAACCCTCATAGCAGCCATCC
TCTACCTGATCACCTCCATCCTTGTGCTCGTGGAGGGAGGACACAGCTCCAAAATTGCCG
CAGGGGTACTGGGCCTACTGGCTGCATGCTTGTTTGGCTACGATGCCTACATTACTTTCC
CCTTGAGGCAGCAAAGACATACAGCAGCCCCTACTGACCCTGCAGATGGCCCCGTGTAGG
TGAACTCCCTTCGCGTGTCTCTCAGCAACCTGCAAATAACACCTCCATCGCAATAACTCC
TTCCCGCCCCTACTGAAAGTGCCTTTACCGGGAGACCATGCCTTCCAGCCTGCCAATCAA
CCCTCCTGGGCGTGGCCACCCTTATGGGTCCGCCTAGGTCCACCTTCCTTCTGCAGTATC
CAGAGACGCTAGTTCTGCCTGGACAATGCCCCCACCTAAAGCCACAGATTTCAGACTCCA
GGCCCCAGGTTGTGACCCTCTCCAAATAACCTTTTCTGTGTGTGTTGGGTGGGAGGGGTT
CCATGGAGGAATAAATACATAATAACCAGATTGTTAGAACATATGAGAATGAATAAATTA
AGCCTTTGATCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q95302_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q95302_PIG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               185-822, gnl|bosTau2|chr24 (25336209-25336856)
               

               
               185-822, gnl|Hg17|chrX (48784763-48787677)
               

               
               185-822, gnl|Mm7|chr2 (75652109-75652980)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               185-822, gnl|bosTau2|chr24 (25336209-25336856)
               

               
               185-822, gnl|Hg17|chrX (48784763-48787677)
               

               
               185-822, gnl|Mm7|chr2 (75652109-75652980)

Expressed library(ies): 25 entry(ies)

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Expressed library(ies): 25 entry(ies)

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               amn (1.25313)
               

               
               csp (0.644745)
               

               
               nmm (0.398406)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               eru (0.360144)
               

               
               ton (0.351)
               

               
               nco (0.323468)
               

               
               cag (0.302389)
               

               
               cly (0.241284)
               

               
               ece (0.229305)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (1.25313)
               

               
               csp (0.644745)
               

               
               nmm (0.398406)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               eru (0.360144)
               

               
               ton (0.351)
               

               
               nco (0.323468)
               

               
               cag (0.302389)
               

               
               cly (0.241284)
               

               
               ece (0.229305)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	185-822, gnl\|bosTau2\|chr24 (25336209-25336856)
	185-822, gnl\|Hg17\|chrX (48784763-48787677)
	185-822, gnl\|Mm7\|chr2 (75652109-75652980)

	amn (1.25313)
	csp (0.644745)
	nmm (0.398406)
	nlu (0.383362)
	nep (0.36785)
	eru (0.360144)
	ton (0.351)
	nco (0.323468)
	cag (0.302389)
	cly (0.241284)
	ece (0.229305)
	duo (0.172801)
	nje (0.16592)
	eli (0.151814)
	pty (0.142714)
	cst (0.140036)
	hlv (0.139256)
	nca (0.136874)
	ste (0.135208)
	pla (0.133672)
	ute (0.132784)
	cov (0.132153)
	eep (0.122564)
	jej (0.0989218)
	eje (0.0988338)