Ss1.1-Pig4-TMW8056B18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGGCGCGGGGCCGCCATGTTGCAGCAGGACAGTAATGATGACACCGAAGATGTTTCCC TGTTTGATGCGGAAGAGGAGACAACTAACAGACCGAAAAAACCCAAAATCAGACACCCCG TGGCATCATTTTTCCATTTATTCTTTCGAGTCAGTGCAATTATAGTCTATCTGCTCTGTG AATTGTTCAGCAGCAGCTTTATTGCCTGTATGGTGACAATTATCTTATTGTTGTCATGTG ACTTTTGGGCAGTCAAGAACGTCACAGGTAGGCTGATGGTTGGCCTGCGCTGGTGGAACC ACATTGATGAAGATGGAAAAAGCCATTGGGTGTTTGAGTCCAGGAAGGCCTCCCCTCAAG AGACGAGGACTGTTTCGGAGGCCGAGTCCAGGATCTTCTGGTTAGGACTCGTTGCCTGTC CGGTGCTGTGGGTGATCTTCGCCTTCAGCGCCCTCTTCTCCTTCAGAGTGAAGTGGTTGG CGGTGGTCATCATGGGTGTGGTGCTGCAAGGTGCCAACCTGTATGGCTACATCAGGTGCA AAGTGGGCAGCAGGAAGAATTTAACCAGCATGGCCACGTCCTACCTTGGGAAGCAGTTTC TAAGACAAACTACAGGAGACGATCAGACATCCTGAGGAGACGGAGGGAGCCTGCCTGTCC TTCACATTGGGAACAGCTGAGCCTTTCGAACTCAGTGCATATTGCAAGGAGGAGTGTTGG GTTTGTTTTTCCATTAGAAAATTTTCTTTCAAAAAAAAAGGTAGTCTTCGTATTAAGTTT TTACTTCCTTTTAGCATTTGGGGCTTGAAGGTGTGGCGTGGCTGGAAACACTGTCGGCGT TGGGGTCATGGTTTGCACCCGCGCACAGGTGGTCACCTAGGGCCCTGCGTCTTAGGTTAA CACAGTGGTTGTGCTCCTGTCTGTGTGGAATGGAGACCTTCGGCTGTGGTCTGTAGACCA CAGAGGGTGTTCTTAGTCTGTCTCAGAACTGTGTGTGTTTACCTGCTATTTCTAGACATT ATTTTCAGAAGGTTTTTTCTTCCATGGTAAGAGTGGGCCCTTTGGCTTATAGATAAGCTA GAAATAATTGTTTATTTTACATTAATATATACTTCATGATGAAACTTCTTAATCTAGGTA TTCACATCGTAGGCAGTTAAAAACCAAATTTGGGCTGTTGGTGTTAACTACTTTTTAAAT TTTTATTTTTTATTTGTAATGAGTTGTGTACTTAAGGCCCAATTAATATAAAAGGAATTT TCGTAGTTTATTCTTAAGGGATACCTGGGGATTGCTGCTGTTGTATTTATTTTTTGGATA GGTAGCCGATTTTACTTTGGAACACCCCAGAAGCTCTTCGGTGGTCCTTGGCCTAATGAA CTCTTTTACCACTAAAAGAGTATTATTCTTATGTCACAGTGAGAATAATCATTTAAAATA CTTGGCATTATAAATGCCTAAAAGACATTTTATCTTATCTATTTTTTTTTTCTTGCTATA ACGGAGATATTGTAAATCAGTGCATTTGTATTAATGGGTATTTCTTAAAGCAATATATGT AACAGTCTGCAAACTCTTGTAGGCATCTGTAAATTCCGTTGTAGGTACTGTAAACTTTGT TTTAATCAACAGATTATTTTGTGACTGTATTTATACATTGTTATAAATTTTTGAAGATGT TTTGTTTAATTGAATAAGTGTCTTTATTGGAGTGATGGCTTTGAAGGTGCATAACTTTAT ATTTGTATAAAACTCTGTTTACAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGGCGCGGGGCCGCCATGTTGCAGCAGGACAGTAATGATGACACCGAAGATGTTTCCC TGTTTGATGCGGAAGAGGAGACAACTAACAGACCGAAAAAACCCAAAATCAGACACCCCG TGGCATCATTTTTCCATTTATTCTTTCGAGTCAGTGCAATTATAGTCTATCTGCTCTGTG AATTGTTCAGCAGCAGCTTTATTGCCTGTATGGTGACAATTATCTTATTGTTGTCATGTG ACTTTTGGGCAGTCAAGAACGTCACAGGTAGGCTGATGGTTGGCCTGCGCTGGTGGAACC ACATTGATGAAGATGGAAAAAGCCATTGGGTGTTTGAGTCCAGGAAGGCCTCCCCTCAAG AGACGAGGACTGTTTCGGAGGCCGAGTCCAGGATCTTCTGGTTAGGACTCGTTGCCTGTC CGGTGCTGTGGGTGATCTTCGCCTTCAGCGCCCTCTTCTCCTTCAGAGTGAAGTGGTTGG CGGTGGTCATCATGGGTGTGGTGCTGCAAGGTGCCAACCTGTATGGCTACATCAGGTGCA AAGTGGGCAGCAGGAAGAATTTAACCAGCATGGCCACGTCCTACCTTGGGAAGCAGTTTC TAAGACAAACTACAGGAGACGATCAGACATCCTGAGGAGACGGAGGGAGCCTGCCTGTCC TTCACATTGGGAACAGCTGAGCCTTTCGAACTCAGTGCATATTGCAAGGAGGAGTGTTGG GTTTGTTTTTCCATTAGAAAATTTTCTTTCAAAAAAAAAGGTAGTCTTCGTATTAAGTTT TTACTTCCTTTTAGCATTTGGGGCTTGAAGGTGTGGCGTGGCTGGAAACACTGTCGGCGT TGGGGTCATGGTTTGCACCCGCGCACAGGTGGTCACCTAGGGCCCTGCGTCTTAGGTTAA CACAGTGGTTGTGCTCCTGTCTGTGTGGAATGGAGACCTTCGGCTGTGGTCTGTAGACCA CAGAGGGTGTTCTTAGTCTGTCTCAGAACTGTGTGTGTTTACCTGCTATTTCTAGACATT ATTTTCAGAAGGTTTTTTCTTCCATGGTAAGAGTGGGCCCTTTGGCTTATAGATAAGCTA GAAATAATTGTTTATTTTACATTAATATATACTTCATGATGAAACTTCTTAATCTAGGTA TTCACATCGTAGGCAGTTAAAAACCAAATTTGGGCTGTTGGTGTTAACTACTTTTTAAAT TTTTATTTTTTATTTGTAATGAGTTGTGTACTTAAGGCCCAATTAATATAAAAGGAATTT TCGTAGTTTATTCTTAAGGGATACCTGGGGATTGCTGCTGTTGTATTTATTTTTTGGATA GGTAGCCGATTTTACTTTGGAACACCCCAGAAGCTCTTCGGTGGTCCTTGGCCTAATGAA CTCTTTTACCACTAAAAGAGTATTATTCTTATGTCACAGTGAGAATAATCATTTAAAATA CTTGGCATTATAAATGCCTAAAAGACATTTTATCTTATCTATTTTTTTTTTCTTGCTATA ACGGAGATATTGTAAATCAGTGCATTTGTATTAATGGGTATTTCTTAAAGCAATATATGT AACAGTCTGCAAACTCTTGTAGGCATCTGTAAATTCCGTTGTAGGTACTGTAAACTTTGT TTTAATCAACAGATTATTTTGTGACTGTATTTATACATTGTTATAAATTTTTGAAGATGT TTTGTTTAATTGAATAAGTGTCTTTATTGGAGTGATGGCTTTGAAGGTGCATAACTTTAT ATTTGTATAAAACTCTGTTTACAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1333-1484, + strand, RNAz p=0.999295 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1333-1484, + strand, RNAz p=0.999295 |
| Aligned organism(s): 81 entry(ies) | More info |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
| 109-257, gnl|bosTau2|chr19 (23503166-23503018) | |
| 109-257, gnl|canFam2|chr5 (42091982-42091884) | |
| 109-257, gnl|canFam2|chr5 (42091990-42091892) | |
| 109-257, gnl|danRer3|chr23 (33824660-33824758) | |
| 109-257, gnl|dasNov1|scaffold_45937 (42695-42597) | |
| 109-257, gnl|dasNov1|scaffold_7544 (8768-8859) | |
| 109-257, gnl|echTel1|scaffold_156414 (1094-1004) | |
| 109-257, gnl|echTel1|scaffold_156414 (1102-1004) | |
| 109-257, gnl|fr1|chrUn (215986579-215986677) | |
| 109-257, gnl|fr1|chrUn (297738156-297738063) | |
| 109-257, gnl|hg17|chr15 (24792904-24793002) | |
| 109-257, gnl|Hg17|chr17 (15397872-15397724) | |
| 109-257, gnl|hg17|chr20 (1520130-1520233) | |
| 109-257, gnl|loxAfr1|scaffold_21606 (27104-27006) | |
| 109-257, gnl|loxAfr1|scaffold_21606 (27112-27018) | |
| 109-257, gnl|Mm7|chr11 (62965190-62965337) | |
| 109-257, gnl|mm7|chr7 (109351322-109351418) | |
| 109-257, gnl|mm7|chr7 (109351314-109351411) | |
| 109-257, gnl|monDom2|scaffold_24 (17726187-17726111) | |
| 109-257, gnl|panTro1|chr16 (21968785-21968687) | |
| 109-257, gnl|panTro1|chr21_random (1430908-1430810) | |
| 109-257, gnl|rheMac2|chr10 (34862414-34862512) | |
| 109-257, gnl|rheMac2|chr7 (5878116-5878214) | |
| 109-257, gnl|rn3|chr1 (206415315-206415229) | |
| 109-257, gnl|rn3|chr1 (206415323-206415237) | |
| 109-257, gnl|tetNig1|chr2 (1868468-1868566) | |
| 109-257, gnl|tetNig1|chr3 (10455412-10455506) | |
| 479-608, gnl|bosTau2|chr19 (23498249-23498120) | |
| 479-608, gnl|canFam2|chr5 (42082031-42081902) | |
| 479-608, gnl|canFam2|chr5 (42081902-42082030) | |
| 479-608, gnl|canFam2|chr5 (42082026-42081902) | |
| 479-608, gnl|canFam2|chr5 (42082031-42081902) | |
| 479-608, gnl|danRer3|chr7 (24523407-24523535) | |
| 479-608, gnl|dasNov1|scaffold_150924 (273-401) | |
| 479-608, gnl|dasNov1|scaffold_150924 (401-273) | |
| 479-608, gnl|dasNov1|scaffold_150924 (273-407) | |
| 479-608, gnl|dasNov1|scaffold_45937 (42333-42209) | |
| 479-608, gnl|echTel1|scaffold_291660 (37968-37840) | |
| 479-608, gnl|echTel1|scaffold_291660 (37840-37968) | |
| 479-608, gnl|echTel1|scaffold_291660 (37963-37840) | |
| 479-608, gnl|echTel1|scaffold_291660 (37968-37834) | |
| 479-608, gnl|fr1|chrUn (297737176-297737052) | |
| 479-608, gnl|fr1|chrUn (215987630-215987754) | |
| 479-608, gnl|galGal2|chr18 (2101232-2101365) | |
| 479-608, gnl|galGal2|chr18 (2101232-2101360) | |
| 479-608, gnl|hg17|chr15 (24793262-24793384) | |
| 479-608, gnl|hg17|chr16 (14202176-14202305) | |
| 479-608, gnl|Hg17|chr17 (15384601-15384472) | |
| 479-608, gnl|hg17|chr3 (184663363-184663489) | |
| 479-608, gnl|hg17|chr7 (89906381-89906516) | |
| 479-608, gnl|mm7|chr11 (62973512-62973637) | |
| 479-608, gnl|mm7|chr11 (62973637-62973509) | |
| 479-608, gnl|mm7|chr11 (62973508-62973637) | |
| 479-608, gnl|Mm7|chr11 (62973507-62973636) | |
| 479-608, gnl|mm7|chr7 (109351858-109351983) | |
| 479-608, gnl|monDom2|scaffold_18 (16421028-16420928) | |
| 479-608, gnl|monDom2|scaffold_24 (17725897-17725739) | |
| 479-608, gnl|monDom2|scaffold_24 (17725902-17725799) | |
| 479-608, gnl|oryCun1|scaffold_172489 (10526-10406) | |
| 479-608, gnl|oryCun1|scaffold_172489 (10404-10526) | |
| 479-608, gnl|oryCun1|scaffold_172489 (10521-10406) | |
| 479-608, gnl|oryCun1|scaffold_172489 (10526-10406) | |
| 479-608, gnl|panTro1|chr16 (21968427-21968305) | |
| 479-608, gnl|panTro1|chr18 (14618933-14619062) | |
| 479-608, gnl|panTro1|chr2 (63246178-63246313) | |
| 479-608, gnl|panTro1|chr2_random (25312112-25311986) | |
| 479-608, gnl|rheMac2|chr16 (15273537-15273412) | |
| 479-608, gnl|rheMac2|chr2 (103203675-103203549) | |
| 479-608, gnl|rheMac2|chr3 (126565541-126565406) | |
| 479-608, gnl|rheMac2|chr7 (5878469-5878591) | |
| 479-608, gnl|rn3|chr1 (206414965-206414836) | |
| 479-608, gnl|rn3|chr1 (206414836-206414965) | |
| 479-608, gnl|rn3|chr1 (206414960-206414836) | |
| 479-608, gnl|rn3|chr1 (206414965-206414830) | |
| 479-608, gnl|tetNig1|chr2 (1869527-1869649) | |
| 479-608, gnl|tetNig1|chr2 (1869635-1869524) | |
| 479-608, gnl|tetNig1|chr2 (1869526-1869649) | |
| 479-608, gnl|tetNig1|chr2 (1869526-1869649) | |
| 677-1764, gnl|bosTau2|chr19 (23496759-23495689) | |
| 677-1764, gnl|Hg17|chr17 (15382110-15381023) | |
| 677-1764, gnl|Mm7|chr11 (62975764-62976748) |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 109-257, gnl|bosTau2|chr19 (23503166-23503018) | |
| 109-257, gnl|canFam2|chr5 (42091982-42091884) | |
| 109-257, gnl|canFam2|chr5 (42091990-42091892) | |
| 109-257, gnl|danRer3|chr23 (33824660-33824758) | |
| 109-257, gnl|dasNov1|scaffold_45937 (42695-42597) | |
| 109-257, gnl|dasNov1|scaffold_7544 (8768-8859) | |
| 109-257, gnl|echTel1|scaffold_156414 (1094-1004) | |
| 109-257, gnl|echTel1|scaffold_156414 (1102-1004) | |
| 109-257, gnl|fr1|chrUn (215986579-215986677) | |
| 109-257, gnl|fr1|chrUn (297738156-297738063) | |
| 109-257, gnl|hg17|chr15 (24792904-24793002) | |
| 109-257, gnl|Hg17|chr17 (15397872-15397724) | |
| 109-257, gnl|hg17|chr20 (1520130-1520233) | |
| 109-257, gnl|loxAfr1|scaffold_21606 (27104-27006) | |
| 109-257, gnl|loxAfr1|scaffold_21606 (27112-27018) | |
| 109-257, gnl|Mm7|chr11 (62965190-62965337) | |
| 109-257, gnl|mm7|chr7 (109351322-109351418) | |
| 109-257, gnl|mm7|chr7 (109351314-109351411) | |
| 109-257, gnl|monDom2|scaffold_24 (17726187-17726111) | |
| 109-257, gnl|panTro1|chr16 (21968785-21968687) | |
| 109-257, gnl|panTro1|chr21_random (1430908-1430810) | |
| 109-257, gnl|rheMac2|chr10 (34862414-34862512) | |
| 109-257, gnl|rheMac2|chr7 (5878116-5878214) | |
| 109-257, gnl|rn3|chr1 (206415315-206415229) | |
| 109-257, gnl|rn3|chr1 (206415323-206415237) | |
| 109-257, gnl|tetNig1|chr2 (1868468-1868566) | |
| 109-257, gnl|tetNig1|chr3 (10455412-10455506) | |
| 479-608, gnl|bosTau2|chr19 (23498249-23498120) | |
| 479-608, gnl|canFam2|chr5 (42082031-42081902) | |
| 479-608, gnl|canFam2|chr5 (42081902-42082030) | |
| 479-608, gnl|canFam2|chr5 (42082026-42081902) | |
| 479-608, gnl|canFam2|chr5 (42082031-42081902) | |
| 479-608, gnl|danRer3|chr7 (24523407-24523535) | |
| 479-608, gnl|dasNov1|scaffold_150924 (273-401) | |
| 479-608, gnl|dasNov1|scaffold_150924 (401-273) | |
| 479-608, gnl|dasNov1|scaffold_150924 (273-407) | |
| 479-608, gnl|dasNov1|scaffold_45937 (42333-42209) | |
| 479-608, gnl|echTel1|scaffold_291660 (37968-37840) | |
| 479-608, gnl|echTel1|scaffold_291660 (37840-37968) | |
| 479-608, gnl|echTel1|scaffold_291660 (37963-37840) | |
| 479-608, gnl|echTel1|scaffold_291660 (37968-37834) | |
| 479-608, gnl|fr1|chrUn (297737176-297737052) | |
| 479-608, gnl|fr1|chrUn (215987630-215987754) | |
| 479-608, gnl|galGal2|chr18 (2101232-2101365) | |
| 479-608, gnl|galGal2|chr18 (2101232-2101360) | |
| 479-608, gnl|hg17|chr15 (24793262-24793384) | |
| 479-608, gnl|hg17|chr16 (14202176-14202305) | |
| 479-608, gnl|Hg17|chr17 (15384601-15384472) | |
| 479-608, gnl|hg17|chr3 (184663363-184663489) | |
| 479-608, gnl|hg17|chr7 (89906381-89906516) | |
| 479-608, gnl|mm7|chr11 (62973512-62973637) | |
| 479-608, gnl|mm7|chr11 (62973637-62973509) | |
| 479-608, gnl|mm7|chr11 (62973508-62973637) | |
| 479-608, gnl|Mm7|chr11 (62973507-62973636) | |
| 479-608, gnl|mm7|chr7 (109351858-109351983) | |
| 479-608, gnl|monDom2|scaffold_18 (16421028-16420928) | |
| 479-608, gnl|monDom2|scaffold_24 (17725897-17725739) | |
| 479-608, gnl|monDom2|scaffold_24 (17725902-17725799) | |
| 479-608, gnl|oryCun1|scaffold_172489 (10526-10406) | |
| 479-608, gnl|oryCun1|scaffold_172489 (10404-10526) | |
| 479-608, gnl|oryCun1|scaffold_172489 (10521-10406) | |
| 479-608, gnl|oryCun1|scaffold_172489 (10526-10406) | |
| 479-608, gnl|panTro1|chr16 (21968427-21968305) | |
| 479-608, gnl|panTro1|chr18 (14618933-14619062) | |
| 479-608, gnl|panTro1|chr2 (63246178-63246313) | |
| 479-608, gnl|panTro1|chr2_random (25312112-25311986) | |
| 479-608, gnl|rheMac2|chr16 (15273537-15273412) | |
| 479-608, gnl|rheMac2|chr2 (103203675-103203549) | |
| 479-608, gnl|rheMac2|chr3 (126565541-126565406) | |
| 479-608, gnl|rheMac2|chr7 (5878469-5878591) | |
| 479-608, gnl|rn3|chr1 (206414965-206414836) | |
| 479-608, gnl|rn3|chr1 (206414836-206414965) | |
| 479-608, gnl|rn3|chr1 (206414960-206414836) | |
| 479-608, gnl|rn3|chr1 (206414965-206414830) | |
| 479-608, gnl|tetNig1|chr2 (1869527-1869649) | |
| 479-608, gnl|tetNig1|chr2 (1869635-1869524) | |
| 479-608, gnl|tetNig1|chr2 (1869526-1869649) | |
| 479-608, gnl|tetNig1|chr2 (1869526-1869649) | |
| 677-1764, gnl|bosTau2|chr19 (23496759-23495689) | |
| 677-1764, gnl|Hg17|chr17 (15382110-15381023) | |
| 677-1764, gnl|Mm7|chr11 (62975764-62976748) |
| Expressed library(ies): 47 entry(ies) | More info |
| Expressed library(ies): 47 entry(ies) | Help | Less info |
| vin (1.66279) | |
| pro (1.02407) | |
| tbr (0.616713) | |
| liv (0.585137) | |
| sug (0.509165) | |
| tra (0.492368) | |
| mgp (0.461361) | |
| fat (0.442282) | |
| spl (0.429553) | |
| hea (0.408998) | |
| aor (0.390549) | |
| mgm (0.360685) | |
| rec (0.346141) | |
| spc (0.340097) | |
| nje (0.33184) | |
| isp (0.300752) | |
| bfe (0.299715) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| pan (0.23596) | |
| med (0.232504) | |
| cty (0.20816) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| fco (0.157208) | |
| lun (0.150489) | |
| ski (0.146735) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 47 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (1.66279) | |
| pro (1.02407) | |
| tbr (0.616713) | |
| liv (0.585137) | |
| sug (0.509165) | |
| tra (0.492368) | |
| mgp (0.461361) | |
| fat (0.442282) | |
| spl (0.429553) | |
| hea (0.408998) | |
| aor (0.390549) | |
| mgm (0.360685) | |
| rec (0.346141) | |
| spc (0.340097) | |
| nje (0.33184) | |
| isp (0.300752) | |
| bfe (0.299715) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| pan (0.23596) | |
| med (0.232504) | |
| cty (0.20816) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| fco (0.157208) | |
| lun (0.150489) | |
| ski (0.146735) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) |