Ss1.1-Pig4-TMW8056C03.3
|
ACCAAGGTGGCAGAGGGCCACAAGGCCAGCTTCTGCTTGGAGGACACGGAATGTGAAGGA
GACATCCAGAAAAGTTATGAGTGTGCCAACTTCGGCGAGCAGGGCATCACCATGGGCTGC
TGGGACATGTACCGCCACGACATTGACTGCCAGTGGGTTGACATCACAGACGTGCCTCCT
GGAGACTACCTGTTCCAGGTTGTCATTAACCCCAACTACGAGGTGGCAGAGTCTGACTAC
ACCAACAACATCATGAAGTGCAGGACCCGCTACGACGGCCACCGCATCTGGATGTACAAC
TGCCACATAGGTGGTTCCTTCAGCGAAGAGACAGAGAAAAAGTTTGAACACTTCAGTGGA
CTCATAAATAACCAGCTCACCTCGCGGTAAAGGAGCCATGTGGTCGCTCCCTGGCTTCAG
GCCGCAGGGCGTCTTCCCCAACAACTGCAGCCTGCCCGGCTCCCTTCACCCAGCCCGTCT
CGACCCCCTGCAGCCACAGCCAAGCTCAGGAGGACAACGAGGAAGGCGTGTTCCTGACGC
AGCCTGGGAAGGCCTCTGGGGGTGGGGCTTGTCCACAGGGCTGTGGGAGCAGCGCCAACC
AAGAGTCATCTTTCCAGGGCCGCAGGTGCACAGGCTGTCACCAACCTGTCCCATCCCAAA
CACGTCCACTCCCAGTCTGACACCATGCGCTCAGCTCACCCCAGGTAACATGGGGTCATT
TTCTTCTCAAGTTACACGTTGGCAACCTGAGTTATCAAACCAAGGAGGTCAGGCTGAACC
CAGTTTCTCCACCTCTTAGGTCATTTCCAGCCAACCTGAATACCTAGACTTCTCTTCCAA
CTAAACCAACTGCCTCTACTCTGTTCTATTCTATCGACACATATAAATAATGCTGCCACG
CGTCTTCTGATTCGGTGAGCTCAGAGTTGGTGCTTCTCTTTCCCCCAGCCCCCCACACCC
CTGCATCCTCTCGTTTTTCAAGATACTATTATTACCTTTTCACAGACTTTGAAACACCAG
GTAACTTAGTGGCATTTAATATTGGGCATCTGGGCCTTTGAAAGCATAGCTCAAAAGAAA
ACCCAACCCACCTGTGTAAGTGACTCATCTTTCTGTCCTTCCAGTGCTGTGGGTAATTGA
TTCAGCGGTGCTATAACCAGGGTCCTGGGTGATGAGGACACTCACCCATCGCCATGTGTC
ATCACAGACACTTTACATACTTGAAACTTGGAATAAAAGATTTACAACCTGAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACCAAGGTGGCAGAGGGCCACAAGGCCAGCTTCTGCTTGGAGGACACGGAATGTGAAGGA
GACATCCAGAAAAGTTATGAGTGTGCCAACTTCGGCGAGCAGGGCATCACCATGGGCTGC
TGGGACATGTACCGCCACGACATTGACTGCCAGTGGGTTGACATCACAGACGTGCCTCCT
GGAGACTACCTGTTCCAGGTTGTCATTAACCCCAACTACGAGGTGGCAGAGTCTGACTAC
ACCAACAACATCATGAAGTGCAGGACCCGCTACGACGGCCACCGCATCTGGATGTACAAC
TGCCACATAGGTGGTTCCTTCAGCGAAGAGACAGAGAAAAAGTTTGAACACTTCAGTGGA
CTCATAAATAACCAGCTCACCTCGCGGTAAAGGAGCCATGTGGTCGCTCCCTGGCTTCAG
GCCGCAGGGCGTCTTCCCCAACAACTGCAGCCTGCCCGGCTCCCTTCACCCAGCCCGTCT
CGACCCCCTGCAGCCACAGCCAAGCTCAGGAGGACAACGAGGAAGGCGTGTTCCTGACGC
AGCCTGGGAAGGCCTCTGGGGGTGGGGCTTGTCCACAGGGCTGTGGGAGCAGCGCCAACC
AAGAGTCATCTTTCCAGGGCCGCAGGTGCACAGGCTGTCACCAACCTGTCCCATCCCAAA
CACGTCCACTCCCAGTCTGACACCATGCGCTCAGCTCACCCCAGGTAACATGGGGTCATT
TTCTTCTCAAGTTACACGTTGGCAACCTGAGTTATCAAACCAAGGAGGTCAGGCTGAACC
CAGTTTCTCCACCTCTTAGGTCATTTCCAGCCAACCTGAATACCTAGACTTCTCTTCCAA
CTAAACCAACTGCCTCTACTCTGTTCTATTCTATCGACACATATAAATAATGCTGCCACG
CGTCTTCTGATTCGGTGAGCTCAGAGTTGGTGCTTCTCTTTCCCCCAGCCCCCCACACCC
CTGCATCCTCTCGTTTTTCAAGATACTATTATTACCTTTTCACAGACTTTGAAACACCAG
GTAACTTAGTGGCATTTAATATTGGGCATCTGGGCCTTTGAAAGCATAGCTCAAAAGAAA
ACCCAACCCACCTGTGTAAGTGACTCATCTTTCTGTCCTTCCAGTGCTGTGGGTAATTGA
TTCAGCGGTGCTATAACCAGGGTCCTGGGTGATGAGGACACTCACCCATCGCCATGTGTC
ATCACAGACACTTTACATACTTGAAACTTGGAATAAAAGATTTACAACCTGAAAAAAAAA |
|
gi|6841386|gb|AAF29046.1| |
Protein identifier
|
gi|6841386|gb|AAF29046.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
70-200, gnl|bosTau2|chr11 (7756488-7756618) |
|
70-200, gnl|canFam2|chr17 (51678513-51678415) |
|
70-200, gnl|danRer3|chr14 (1304376-1304474) |
|
70-200, gnl|dasNov1|scaffold_10203 (64789-64691) |
|
70-200, gnl|echTel1|scaffold_295249 (4884-4786) |
|
70-200, gnl|fr1|chrUn (80251538-80251636) |
|
70-200, gnl|galGal2|chr22 (1223339-1223241) |
|
70-200, gnl|hg17|chr2 (74672877-74672975) |
|
70-200, gnl|Hg17|chr2 (74673010-74672880) |
|
70-200, gnl|loxAfr1|scaffold_8565 (22403-22501) |
|
70-200, gnl|mm7|chr6 (83075885-83075787) |
|
70-200, gnl|Mm7|chr6 (83075750-83075880) |
|
70-200, gnl|monDom2|scaffold_10 (48129595-48129502) |
|
70-200, gnl|oryCun1|scaffold_128785 (102-4) |
|
70-200, gnl|panTro1|chr12 (77077444-77077542) |
|
70-200, gnl|rheMac2|chr13 (74764404-74764502) |
|
70-200, gnl|rn3|chr4 (117505874-117505776) |
|
70-200, gnl|tetNig1|chr10 (11905190-11905288) |
|
70-200, gnl|xenTro1|scaffold_1403 (51408-51506) |
| |
|
309-1251, gnl|bosTau2|chr8 (37011898-37012872) |
|
309-1251, gnl|Hg17|chr8 (23211582-23210636) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
70-200, gnl|bosTau2|chr11 (7756488-7756618) |
|
70-200, gnl|canFam2|chr17 (51678513-51678415) |
|
70-200, gnl|danRer3|chr14 (1304376-1304474) |
|
70-200, gnl|dasNov1|scaffold_10203 (64789-64691) |
|
70-200, gnl|echTel1|scaffold_295249 (4884-4786) |
|
70-200, gnl|fr1|chrUn (80251538-80251636) |
|
70-200, gnl|galGal2|chr22 (1223339-1223241) |
|
70-200, gnl|hg17|chr2 (74672877-74672975) |
|
70-200, gnl|Hg17|chr2 (74673010-74672880) |
|
70-200, gnl|loxAfr1|scaffold_8565 (22403-22501) |
|
70-200, gnl|mm7|chr6 (83075885-83075787) |
|
70-200, gnl|Mm7|chr6 (83075750-83075880) |
|
70-200, gnl|monDom2|scaffold_10 (48129595-48129502) |
|
70-200, gnl|oryCun1|scaffold_128785 (102-4) |
|
70-200, gnl|panTro1|chr12 (77077444-77077542) |
|
70-200, gnl|rheMac2|chr13 (74764404-74764502) |
|
70-200, gnl|rn3|chr4 (117505874-117505776) |
|
70-200, gnl|tetNig1|chr10 (11905190-11905288) |
|
70-200, gnl|xenTro1|scaffold_1403 (51408-51506) |
| |
|
309-1251, gnl|bosTau2|chr8 (37011898-37012872) |
|
309-1251, gnl|Hg17|chr8 (23211582-23210636) |
|
amn (0.835422) |
|
nep (0.36785) |
|
nca (0.273748) |
|
pla (0.267344) |
|
eru (0.240096) |
|
mas (0.210305) |
|
eye (0.170503) |
|
isp (0.150376) |
|
fat (0.147427) |
|
ssp (0.13552) |
|
eep (0.122564) |
|
clu (0.119646) |
|
jej (0.0989218) |
|
amn (0.835422) |
|
nep (0.36785) |
|
nca (0.273748) |
|
pla (0.267344) |
|
eru (0.240096) |
|
mas (0.210305) |
|
eye (0.170503) |
|
isp (0.150376) |
|
fat (0.147427) |
|
ssp (0.13552) |
|
eep (0.122564) |
|
clu (0.119646) |
|
jej (0.0989218) |
