Ss1.1-Pig4-TMW8056C03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGAACGGAGAGTGGGGTACCGTCTGCGACGACAAGTGGGACCTGGTGTCTGCCAGCGT GGTCTGCAGAGAACTGGGCTTCGGGAGTGCCAAAGAGGCCATCACAGGCTCCCGGCTGGG GCAAGGGATAGGACCCATCCACCTCAATGAAATCCAGTGCACGGGGAATGAGAAGTCCAT CATAGACTGCAAATTCAATGCAGAGTCTCAGGGCTGCAACCACGAGGAAGATGCTGGTGT GAGATGTAACATCCCCGCCATTGGCTTCCAGAAAAAGCTGCGCCTGAACGGGGGCCGAAA TCCCTACGAGGGCCGCGTGGAGGTGCTGGTGGAGAGGAACGGGTCCCTCGTGTGGGGGAC AGTGTGCGGCGAAAACTGGGGCATCGTGGAGGCCATGGTGGTCTGCCGGCAGCTGGGCCT GGGCTTCGCCAGCAACGCCTTCCAGGAGACCTGGTATTGGCACGGAAATGCCCACAACAA GGTGGTCATGAGCGGGGTGAAGTGCTCAGGAACGGAGCTGTCCCTGGCGCACTGTCGCCA CGACGGAGAGGACGTGACCTGCCCCCAGGGTGGGGTGCAGTATGGGGCCGGAGTCGCCTG CTCAGAAACCGCCCCAGACCTGGTCCTCAACGCAGAGATTGTGCAGCAGAGCACCTACCT GGAGGACCGGCCCATGTTCATGCTGCAGTGTGCCATGGAGGAGAACTGCCTCGCCGCCTC GGCCGCCCAGACCAACCCCACCACCGGCTACCGGAGGCTCCTGCGCTTCTCCTCCCAGAT CCACAACAACGGCCAGTCCGACTTCCGACCCAAGAACGGCCGCCACGCGTGGATCTGGCA TGACTGCCATAGGCACTACCACAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGAACGGAGAGTGGGGTACCGTCTGCGACGACAAGTGGGACCTGGTGTCTGCCAGCGT GGTCTGCAGAGAACTGGGCTTCGGGAGTGCCAAAGAGGCCATCACAGGCTCCCGGCTGGG GCAAGGGATAGGACCCATCCACCTCAATGAAATCCAGTGCACGGGGAATGAGAAGTCCAT CATAGACTGCAAATTCAATGCAGAGTCTCAGGGCTGCAACCACGAGGAAGATGCTGGTGT GAGATGTAACATCCCCGCCATTGGCTTCCAGAAAAAGCTGCGCCTGAACGGGGGCCGAAA TCCCTACGAGGGCCGCGTGGAGGTGCTGGTGGAGAGGAACGGGTCCCTCGTGTGGGGGAC AGTGTGCGGCGAAAACTGGGGCATCGTGGAGGCCATGGTGGTCTGCCGGCAGCTGGGCCT GGGCTTCGCCAGCAACGCCTTCCAGGAGACCTGGTATTGGCACGGAAATGCCCACAACAA GGTGGTCATGAGCGGGGTGAAGTGCTCAGGAACGGAGCTGTCCCTGGCGCACTGTCGCCA CGACGGAGAGGACGTGACCTGCCCCCAGGGTGGGGTGCAGTATGGGGCCGGAGTCGCCTG CTCAGAAACCGCCCCAGACCTGGTCCTCAACGCAGAGATTGTGCAGCAGAGCACCTACCT GGAGGACCGGCCCATGTTCATGCTGCAGTGTGCCATGGAGGAGAACTGCCTCGCCGCCTC GGCCGCCCAGACCAACCCCACCACCGGCTACCGGAGGCTCCTGCGCTTCTCCTCCCAGAT CCACAACAACGGCCAGTCCGACTTCCGACCCAAGAACGGCCGCCACGCGTGGATCTGGCA TGACTGCCATAGGCACTACCACAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 728-853, - strand, RNAz p=0.802037 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 728-853, - strand, RNAz p=0.802037 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 1-126, gnl|bosTau2|chr8 (37610162-37610287) | |
| 1-126, gnl|canFam2|chr25 (37145983-37145761) | |
| 1-126, gnl|danRer3|chr10 (11698371-11698567) | |
| 1-126, gnl|dasNov1|scaffold_68492 (4248-4030) | |
| 1-126, gnl|echTel1|scaffold_322650 (120607-120824) | |
| 1-126, gnl|fr1|chrUn (80255844-80256048) | |
| 1-126, gnl|galGal2|chr22 (1214313-1214091) | |
| 1-126, gnl|hg17|chr8 (23241818-23242040) | |
| 1-126, gnl|Hg17|chr8 (23241964-23241839) | |
| 1-126, gnl|loxAfr1|scaffold_142251 (643-432) | |
| 1-126, gnl|mm7|chr14 (64311768-64311546) | |
| 1-126, gnl|Mm7|chr14 (64311620-64311745) | |
| 1-126, gnl|monDom2|scaffold_61 (9905601-9905390) | |
| 1-126, gnl|oryCun1|scaffold_176248 (61624-61400) | |
| 1-126, gnl|panTro1|chr7 (24186012-24186234) | |
| 1-126, gnl|rheMac2|chr8 (23431546-23431768) | |
| 1-126, gnl|rn3|chr15 (50058011-50057789) | |
| 1-126, gnl|tetNig1|chr12 (12077987-12077793) | |
| 1-126, gnl|xenTro1|scaffold_763 (377640-377445) | |
| 276-446, gnl|bosTau2|chr26 (9146147-9145977) | |
| 276-446, gnl|canFam2|chr28 (14406165-14406370) | |
| 276-446, gnl|danRer3|chr10 (11693844-11694025) | |
| 276-446, gnl|dasNov1|scaffold_10203 (63646-63448) | |
| 276-446, gnl|echTel1|scaffold_319440 (53694-53900) | |
| 276-446, gnl|fr1|chrUn (164814863-164815042) | |
| 276-446, gnl|galGal2|chrUn (122306500-122306686) | |
| 276-446, gnl|hg17|chr10 (100006519-100006725) | |
| 276-446, gnl|Hg17|chr10 (100006696-100006526) | |
| 276-446, gnl|loxAfr1|scaffold_13447 (26115-26321) | |
| 276-446, gnl|mm7|chr19 (42497052-42497258) | |
| 276-446, gnl|Mm7|chr19 (42497229-42497059) | |
| 276-446, gnl|monDom2|scaffold_14 (24053393-24053187) | |
| 276-446, gnl|oryCun1|scaffold_211198 (106415-106621) | |
| 276-446, gnl|panTro1|chr8 (101742955-101743161) | |
| 276-446, gnl|rheMac2|chr9 (97845494-97845700) | |
| 276-446, gnl|rn3|chr1 (248394398-248394192) | |
| 276-446, gnl|tetNig1|chr18 (1922149-1921975) | |
| 276-446, gnl|xenTro1|scaffold_51 (2345145-2345328) | |
| 609-853, gnl|bosTau2|chr11 (7755946-7756190) | |
| 609-853, gnl|canFam2|chr17 (51678084-51677796) | |
| 609-853, gnl|danRer3|chr14 (1314224-1314495) | |
| 609-853, gnl|dasNov1|scaffold_10203 (64377-64089) | |
| 609-853, gnl|echTel1|scaffold_295249 (4465-4174) | |
| 609-853, gnl|fr1|chrUn (80252592-80252868) | |
| 609-853, gnl|galGal2|chrUn (122305420-122305713) | |
| 609-853, gnl|hg17|chr2 (74673308-74673598) | |
| 609-853, gnl|Hg17|chr2 (74673556-74673312) | |
| 609-853, gnl|loxAfr1|scaffold_8565 (22994-23285) | |
| 609-853, gnl|mm7|chr6 (83075458-83075176) | |
| 609-853, gnl|Mm7|chr6 (83075208-83075452) | |
| 609-853, gnl|monDom2|scaffold_10 (48129126-48128844) | |
| 609-853, gnl|oryCun1|scaffold_211198 (102918-103185) | |
| 609-853, gnl|panTro1|chr12 (77077875-77078166) | |
| 609-853, gnl|rheMac2|chr13 (74764834-74765124) | |
| 609-853, gnl|rn3|chr4 (117505449-117505171) | |
| 609-853, gnl|tetNig1|chr10 (11905590-11905875) | |
| 609-853, gnl|xenTro1|scaffold_763 (380228-379964) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-126, gnl|bosTau2|chr8 (37610162-37610287) | |
| 1-126, gnl|canFam2|chr25 (37145983-37145761) | |
| 1-126, gnl|danRer3|chr10 (11698371-11698567) | |
| 1-126, gnl|dasNov1|scaffold_68492 (4248-4030) | |
| 1-126, gnl|echTel1|scaffold_322650 (120607-120824) | |
| 1-126, gnl|fr1|chrUn (80255844-80256048) | |
| 1-126, gnl|galGal2|chr22 (1214313-1214091) | |
| 1-126, gnl|hg17|chr8 (23241818-23242040) | |
| 1-126, gnl|Hg17|chr8 (23241964-23241839) | |
| 1-126, gnl|loxAfr1|scaffold_142251 (643-432) | |
| 1-126, gnl|mm7|chr14 (64311768-64311546) | |
| 1-126, gnl|Mm7|chr14 (64311620-64311745) | |
| 1-126, gnl|monDom2|scaffold_61 (9905601-9905390) | |
| 1-126, gnl|oryCun1|scaffold_176248 (61624-61400) | |
| 1-126, gnl|panTro1|chr7 (24186012-24186234) | |
| 1-126, gnl|rheMac2|chr8 (23431546-23431768) | |
| 1-126, gnl|rn3|chr15 (50058011-50057789) | |
| 1-126, gnl|tetNig1|chr12 (12077987-12077793) | |
| 1-126, gnl|xenTro1|scaffold_763 (377640-377445) | |
| 276-446, gnl|bosTau2|chr26 (9146147-9145977) | |
| 276-446, gnl|canFam2|chr28 (14406165-14406370) | |
| 276-446, gnl|danRer3|chr10 (11693844-11694025) | |
| 276-446, gnl|dasNov1|scaffold_10203 (63646-63448) | |
| 276-446, gnl|echTel1|scaffold_319440 (53694-53900) | |
| 276-446, gnl|fr1|chrUn (164814863-164815042) | |
| 276-446, gnl|galGal2|chrUn (122306500-122306686) | |
| 276-446, gnl|hg17|chr10 (100006519-100006725) | |
| 276-446, gnl|Hg17|chr10 (100006696-100006526) | |
| 276-446, gnl|loxAfr1|scaffold_13447 (26115-26321) | |
| 276-446, gnl|mm7|chr19 (42497052-42497258) | |
| 276-446, gnl|Mm7|chr19 (42497229-42497059) | |
| 276-446, gnl|monDom2|scaffold_14 (24053393-24053187) | |
| 276-446, gnl|oryCun1|scaffold_211198 (106415-106621) | |
| 276-446, gnl|panTro1|chr8 (101742955-101743161) | |
| 276-446, gnl|rheMac2|chr9 (97845494-97845700) | |
| 276-446, gnl|rn3|chr1 (248394398-248394192) | |
| 276-446, gnl|tetNig1|chr18 (1922149-1921975) | |
| 276-446, gnl|xenTro1|scaffold_51 (2345145-2345328) | |
| 609-853, gnl|bosTau2|chr11 (7755946-7756190) | |
| 609-853, gnl|canFam2|chr17 (51678084-51677796) | |
| 609-853, gnl|danRer3|chr14 (1314224-1314495) | |
| 609-853, gnl|dasNov1|scaffold_10203 (64377-64089) | |
| 609-853, gnl|echTel1|scaffold_295249 (4465-4174) | |
| 609-853, gnl|fr1|chrUn (80252592-80252868) | |
| 609-853, gnl|galGal2|chrUn (122305420-122305713) | |
| 609-853, gnl|hg17|chr2 (74673308-74673598) | |
| 609-853, gnl|Hg17|chr2 (74673556-74673312) | |
| 609-853, gnl|loxAfr1|scaffold_8565 (22994-23285) | |
| 609-853, gnl|mm7|chr6 (83075458-83075176) | |
| 609-853, gnl|Mm7|chr6 (83075208-83075452) | |
| 609-853, gnl|monDom2|scaffold_10 (48129126-48128844) | |
| 609-853, gnl|oryCun1|scaffold_211198 (102918-103185) | |
| 609-853, gnl|panTro1|chr12 (77077875-77078166) | |
| 609-853, gnl|rheMac2|chr13 (74764834-74765124) | |
| 609-853, gnl|rn3|chr4 (117505449-117505171) | |
| 609-853, gnl|tetNig1|chr10 (11905590-11905875) | |
| 609-853, gnl|xenTro1|scaffold_763 (380228-379964) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| eep (0.367692) | |
| nep (0.183925) | |
| nco (0.161734) | |
| che (0.136314) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.367692) | |
| nep (0.183925) | |
| nco (0.161734) | |
| che (0.136314) |