Non-Coding RNA Search

Ss1.1-Pig4-TMW8056C04.5

Sequence:


               
               GGCCAGGCGCGGCCGCCGAGCCGAGCCGCTCCGGGCCCGCGGCCATGCCCAAGCGGGGCT
GCCCCTTCGCGGACGCGGCCCCGCTACAGCTCAAGGTTCGTGTGGGCCAGAGGGAGCTGA
GTCGCGGCGTGTGTGCCGAGCGCCTCACTCGGGAGATTTTCGAGAAGACCACCCAGCTCC
TCTTCCGAGGGGCCCAGGCCTACATGGACCACGCGTGGGAGGAGGGCTGTGCCACCGTTG
ACCTGCCGGAATCCCCGAAGCCCGGCCCCACGGAAGCCCCTCGGGCCTCGCGGGGGCAGA
TGCTCATCGGGCCCGACGGCCGACTGACCAGGAGCCGAGCCCAGGCCTCTGAAGCTGAGC
CGGCCGGGGCCGCGTCGGGGGCCTGCTCGTCGTGCGTGCGTGCCGCGGACGGGAAGGCGG
CGTGTGGCCAGTGTGAGCGAGCCCTGTGCGGGCGCTGCGTGCACACCTGCTGCAGCTGCG
GGGCCCTGGCCTGCCCCCTGTGCGCCGTCGTGGACTGCAGCAACATTCAGGAGAAAGTGC
TGTGTGCCAGCTGTGCCGTGTTCGAGACCTGAGGCAGGAGTGGACAGCGGCCTTGCCTGG
ACAACCCCGCTGGTGTGGACGCTGGGACCCGTGTGGTGGGCGGGAGGGGGCCTTTCTAGT
CCGTATTTTGTGCTCCTGACAACAGGAGTGAATAAACCGTTTATGTTTGGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCAGGCGCGGCCGCCGAGCCGAGCCGCTCCGGGCCCGCGGCCATGCCCAAGCGGGGCT
GCCCCTTCGCGGACGCGGCCCCGCTACAGCTCAAGGTTCGTGTGGGCCAGAGGGAGCTGA
GTCGCGGCGTGTGTGCCGAGCGCCTCACTCGGGAGATTTTCGAGAAGACCACCCAGCTCC
TCTTCCGAGGGGCCCAGGCCTACATGGACCACGCGTGGGAGGAGGGCTGTGCCACCGTTG
ACCTGCCGGAATCCCCGAAGCCCGGCCCCACGGAAGCCCCTCGGGCCTCGCGGGGGCAGA
TGCTCATCGGGCCCGACGGCCGACTGACCAGGAGCCGAGCCCAGGCCTCTGAAGCTGAGC
CGGCCGGGGCCGCGTCGGGGGCCTGCTCGTCGTGCGTGCGTGCCGCGGACGGGAAGGCGG
CGTGTGGCCAGTGTGAGCGAGCCCTGTGCGGGCGCTGCGTGCACACCTGCTGCAGCTGCG
GGGCCCTGGCCTGCCCCCTGTGCGCCGTCGTGGACTGCAGCAACATTCAGGAGAAAGTGC
TGTGTGCCAGCTGTGCCGTGTTCGAGACCTGAGGCAGGAGTGGACAGCGGCCTTGCCTGG
ACAACCCCGCTGGTGTGGACGCTGGGACCCGTGTGGTGGGCGGGAGGGGGCCTTTCTAGT
CCGTATTTTGTGCTCCTGACAACAGGAGTGAATAAACCGTTTATGTTTGGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               SIVA_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               SIVA_HUMAN

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               162-357, gnl|bosTau2|chr21 (48960465-48960270)
               

               
               162-357, gnl|Hg17|chr14 (104293011-104293206)
               

               
               162-357, gnl|Mm7|chr12 (110171782-110171977)
               


               
               534-728, gnl|bosTau2|chr16 (16585254-16585453)
               

               
               534-728, gnl|Hg17|chr14 (104296829-104297034)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               162-357, gnl|bosTau2|chr21 (48960465-48960270)
               

               
               162-357, gnl|Hg17|chr14 (104293011-104293206)
               

               
               162-357, gnl|Mm7|chr12 (110171782-110171977)
               


               
               534-728, gnl|bosTau2|chr16 (16585254-16585453)
               

               
               534-728, gnl|Hg17|chr14 (104296829-104297034)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               ton (0.526501)
               

               
               ece (0.45861)
               

               
               elu (0.385356)
               

               
               ill (0.351185)
               

               
               med (0.348756)
               

               
               nbm (0.297974)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.526501)
               

               
               ece (0.45861)
               

               
               elu (0.385356)
               

               
               ill (0.351185)
               

               
               med (0.348756)
               

               
               nbm (0.297974)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

	162-357, gnl\|bosTau2\|chr21 (48960465-48960270)
	162-357, gnl\|Hg17\|chr14 (104293011-104293206)
	162-357, gnl\|Mm7\|chr12 (110171782-110171977)

	534-728, gnl\|bosTau2\|chr16 (16585254-16585453)
	534-728, gnl\|Hg17\|chr14 (104296829-104297034)

	ton (0.526501)
	ece (0.45861)
	elu (0.385356)
	ill (0.351185)
	med (0.348756)
	nbm (0.297974)
	eep (0.245128)
	cly (0.241284)
	ecc (0.23007)
	nms (0.213858)
	eje (0.197668)
	nep (0.183925)
	nje (0.16592)
	cki (0.165235)
	csp (0.161186)
	eli (0.151814)
	lnt (0.142308)
	cst (0.140036)
	hlv (0.139256)
	nca (0.136874)
	ese (0.126502)
	eru (0.120048)